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PFAM Domains • Schizophyllum commune H4-8 v3.0
Annotations/GenomesAgabi_varbisH97_2Copci1Fishe1Phchr2PleosPC15_2Schco1Schco2Schco3Schco_LoeD_1Schco_TatD_1TotalAnnotation Description
PFAMs
6,9507,6787,1058,2287,9726,9178,4928,5908,2888,42278,642
117 transmembrane receptor (rhodopsin family)
38434147473843434744431ATPase family associated with various cellular activities (AAA)
36464249394546464546440ABC transporter
446444444442ATP synthase alpha/beta family, nucleotide-binding domain
111115EGF-like domain
16151717151515151515155Elongation factor Tu GTP binding domain
9101111111112131212112Helix-loop-helix DNA-binding domain
475978999976Hsp20/alpha crystallin family
78108117777779Hsp70 protein
988888998883KH domain
13111111111SH2 domain
30312422282726272726268SH3 domain
1112111011911111111108Actin
18932625222945605958435Ankyrin repeat
587787777770ADP-ribosylation factor family
15132059242829262424262Eukaryotic aspartyl protease
333333333330Cyclic nucleotide-binding domain
112111111111Cytochrome c
66105691213121291Double-stranded RNA binding motif
19191523192520201820198EF hand
1211111111114Fe-4S binding domain
111111111110Fibronectin type III domain
1111116Globin
27148228614151314141Glutathione S-transferase, C-terminal domain
232121111115Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
213Hemopexin
7107910101111111197Homeodomain
1211117Laminin EGF domain
222232222221lactate/malate dehydrogenase, NAD binding domain
555555566653Myosin head (motor domain)
116134911551431061141141101141,197Cytochrome P450
1361361671531551471611621521541,523Protein kinase domain
13171425201211111211146Pyridine nucleotide-disulphide oxidoreductase
25322728262726272727272Ras family
68811101312121212104Response regulator receiver domain
72911691031067RNase H
60647071676870707069679RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
11114Copper/zinc superoxide dismutase (SODC)
122322333324Iron/manganese superoxide dismutases, alpha-hairpin domain
7125492333351Subtilase family
27204127276641414343376Sugar (and other) transporter
129810151113131213116Thioredoxin
556565555552Tubulin/FtsZ family, GTPase domain
333942333336von Willebrand factor type A domain
376039525712598100100101769Zinc finger, C2H2 type
43484861595266715963570Zinc finger, C3HC4 type (RING finger)
83211814446024221824328Zinc knuckle
222222222220Protein-tyrosine phosphatase
5449688380104110112116118894short chain dehydrogenase
27293659414547474645422Zinc-binding dehydrogenase
644645444445Thiolase, N-terminal domain
323223332225Beta-ketoacyl synthase, N-terminal domain
3333333333302Fe-2S iron-sulfur cluster binding domain
111211111111Enolase, C-terminal TIM barrel domain
987877888878Glutamine amidotransferase class-I
1010151010910101010104TCP-1/cpn60 chaperonin family
11ATP synthase A chain
443433333333Glutamine synthetase, catalytic domain
111111111110Triosephosphate isomerase
7111012139999998E1-E2 ATPase
16161516172122221718180Core histone H2A/H2B/H3/H4
2142222217Copper binding proteins, plastocyanin/azurin family
6817891212121212108Alpha amylase, catalytic domain
564633656650Phorbol esters/diacylglycerol binding domain (C1 domain)
254653444441Bacterial transferase hexapeptide (six repeats)
333426334536tRNA synthetases class I (I, L, M and V)
101217109181413119123Cyclin, N-terminal domain
19192012262323262222212Carboxylesterase family
542444443438DNA polymerase family B
333333333330ATP synthase subunit C
54117102222247Peroxidase
321333334429Beta-lactamase
444554566649C-5 cytosine-specific DNA methylase
22312526272124242424248Calcineurin-like phosphoesterase
811714134767784Cellulase (glycosyl hydrolase family 5)
555656666656tRNA synthetases class II (D, K and N)
34363638343336373937360Mitochondrial carrier protein
13161215131116161717146Aminotransferase class I and II
566675676660Phosphoribosyl transferase domain
13141514101414141413135Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
112111111111Phosphoglycerate kinase
222222222220Ribosomal protein S4/S9 N-terminal domain
222222222220Ribosomal protein S12/S23
211111111111Chaperonin 10 Kd subunit
14171215181419181717161C2 domain
20192023181620191818191PH domain
566767666762bZIP transcription factor
24121221191616161817171Aldehyde dehydrogenase family
50425686537988887683701Fungal Zn(2)-Cys(6) binuclear cluster domain
20242124222224252524231Cytochrome b5-like Heme/Steroid binding domain
12421111114Oxidoreductase molybdopterin binding domain
61051681011118792Oxidoreductase NAD-binding domain
19262026262122222223227SNF2 family N-terminal domain
222222222220Ribosomal protein S7p/S5e
18232122202121212121209Ubiquitin-conjugating enzyme
656555555552Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
222322333224Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
423255555541Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
21925234432Cupin
1315Annexin
33Chalcone and stilbene synthases, N-terminal domain
3342433333312-oxoacid dehydrogenases acyltransferase (catalytic domain)
342522222226Catalase
111111111110Disintegrin
65111115UDP-glucoronosyl and UDP-glucosyl transferase
558555554552Aminotransferase class-III
222222222220Ribosomal protein S19
111111111110DNA gyrase B
343353444437Thiamine pyrophosphate enzyme, central domain
333333333330Lyase
223212222220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
121111221113Indole-3-glycerol phosphate synthase
221122222218Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
9810109101010111198Kinesin motor domain
31322732292727303127293DnaJ domain
14141514141414141414141Proteasome subunit
421972333337Major intrinsic protein
111111111110ATP synthase
121233333324Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
211211111112Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
13171619161313131314147Ubiquitin family
555654775554Cofilin/tropomyosin-type actin-binding protein
12322122221914-3-3 protein
321253333328Alkaline phosphatase
112112222216Zinc carboxypeptidase
21224556425660605657475Aldo/keto reductase family
13131614151111111111126Myb-like DNA-binding domain
555558889866Forkhead domain
1122118Glycosyl hydrolases family 32 N-terminal domain
111121111111Ribosomal protein L16p/L10e
122221222218Ribosomal protein S14p/S29e
534385555649FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
221222222219
7661467777774Flavodoxin
111211111111Calreticulin family
61914111134Common central domain of tyrosinase
7769113999979Aminotransferase class-V
224423333329Ribonucleotide reductase, small chain
47515549556967666255576DEAD/DEAH box helicase
77928488929198979292903Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222220Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111111110Ribosomal protein L5
454557776757Pyridoxal-dependent decarboxylase conserved domain
354333333333Citrate synthase, C-terminal domain
446654554548GHMP kinases N terminal domain
765665555555Biotin carboxylase, N-terminal domain
112111111111Tryptophan synthase alpha chain
7771078887877Pyridoxal-phosphate dependent enzyme
12171717151314141414147NUDIX domain
345455666650pfkB family carbohydrate kinase
636563333341Glycosyl hydrolases family 28
222222332222Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
9789108999987Histidine phosphatase superfamily (branch 1)
111111111110Thymidylate synthase
22Lipoxygenase
446444444442ATP synthase alpha/beta chain, C terminal domain
445544555445Calponin homology (CH) domain
544554555547Glutamine amidotransferases class-II
122222122218Ribosomal protein S15
3556361111111172Thaumatin family
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
111111111110Ribonucleotide reductase, all-alpha domain
222212222219Ribosomal protein S2
212224444429SRF-type transcription factor (DNA-binding and dimerisation domain)
111115991212121313117GATA zinc finger
15132420201921211821192Amino acid permease
11Bacterial regulatory proteins, crp family
555682777759Prolyl oligopeptidase family
113111111112Ribosomal protein L30p/L7e
85810136999986Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
544444444441Aconitase family (aconitate hydratase)
262635555544Glycosyl hydrolase family 10
332112222220Glycosyl hydrolases family 17
122222222219Ribosomal protein S5, N-terminal domain
221222222118Nucleoside diphosphate kinase
231131111115Tetraspanin family
22Galactoside-binding lectin
222222222220Ribosomal protein S10p/S20e
132842554438Arrestin (or S-antigen), N-terminal domain
121111112213Phosphoglucose isomerase
112111111111Carbohydrate phosphorylase
111131111112SecY translocase
11111221313Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
343446666648Polyprenyl synthetase
222222222220Hexokinase
746769997973Dynamin family
111111111110Transcription factor TFIID (or TATA-binding protein, TBP)
343422322227Rieske [2Fe-2S] domain
112Bacterial regulatory proteins, lacI family
10979149999994Biotin-requiring enzyme
111211111111Phosphofructokinase
222222222220Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
333333333330FGGY family of carbohydrate kinases, N-terminal domain
77791099910986Enoyl-CoA hydratase/isomerase
11Insect cuticle protein
322222222221Ribosomal protein S9/S16
232222222221Transcription factor TFIIB repeat
456865666658Cytidine and deoxycytidylate deaminase zinc-binding region
211111111111Molybdopterin oxidoreductase
107101022419291816145Chromo (CHRromatin Organisation MOdifier) domain
333133444331Phosphatidylinositol-specific phospholipase C, Y domain
334145333332Phosphatidylinositol-specific phospholipase C, X domain
666756776763D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
323333333329Malic enzyme, N-terminal domain
1112222222176-phosphogluconate dehydrogenase, C-terminal domain
131765126666683Multicopper oxidase
91271178999990WW domain
222322222221Ribosomal RNA adenine dimethylase
1141241161401401271301321181181,259WD domain, G-beta repeat
223544444436Heavy-metal-associated domain
333333333330Adenylate kinase
222222112218Phosphoglucomutase/phosphomannomutase, C-terminal domain
121211111112Ribosomal protein S8
122121111113Ribosomal protein S11
656654565654LIM domain
334333333331Regulator of chromosome condensation (RCC1) repeat
223222222221Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
322222222221chorismate binding enzyme
33433333333160s Acidic ribosomal protein
445554444443Prenyltransferase and squalene oxidase repeat
576666777764Protein kinase C terminal domain
1111111119Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
1011999111111910100Bromodomain
89691010999988Acyl-CoA dehydrogenase, C-terminal domain
16151415161517171515155Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
21241111114Ribonuclease T2 family
634464443442HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
111112221113Urease alpha-subunit, N-terminal domain
145622121010101010109Serine carboxypeptidase
989888888882Phosphatidylinositol 3- and 4-kinase
222223333325Transketolase, thiamine diphosphate binding domain
26121111116Glycosyl hydrolases family 11
1111111119WHEP-TRS domain
322225672233Inositol monophosphatase family
544544555546Glutaredoxin
636462333339Isocitrate lyase family
211111111111Serine hydroxymethyltransferase
323424444434Iron-containing alcohol dehydrogenase
211122221216Ribosomal protein L10
245357554545KOW motif
111111111110Ribosomal protein L34
232333333328RF-1 domain
1331111112Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
11111222112Glucose-6-phosphate dehydrogenase, NAD binding domain
9812981113131212107Protein phosphatase 2C
213331112118Nucleotidyl transferase
372482222234Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
108127121313131312113Fatty acid desaturase
666666666660MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
224754444440Arginase family
666666666761MCM P-loop domain
111121111111Squalene/phytoene synthase
881115118999997FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
30302845322531313330315AMP-binding enzyme
13161513141515151516147G-protein alpha subunit
12261717173035353030249HMG (high mobility group) box
3447610997867His Kinase A (phospho-acceptor) domain
423324443433Armadillo/beta-catenin-like repeat
26292428192527272424253Tetratricopeptide repeat
434322333330Ion transport protein
121111111111DNA gyrase/topoisomerase IV, subunit A
81010101091010101198BRCA1 C Terminus (BRCT) domain
668664777764Glycosyl transferases group 1
345635445544Glycosyl transferase family 2
3214333322SAM domain (Sterile alpha motif)
343233333330linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
1184444430Pectate lyase
111252222220ribonuclease
111112221113Urease, gamma subunit
333333333330CoA-ligase
4671061116161713106Phosphopantetheine attachment site
222232222221Formyl transferase
1091111101011111111105Metallopeptidase family M24
17151515171616161515157Leucine Rich Repeat
41342558472449514247418alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
554645556651PB1 domain
222222222220Staphylococcal nuclease homologue
109101191011111011102Rab-GTPase-TBC domain
111111111110Tudor domain
111211111111WH1 domain
343533333333Zinc finger, ZZ type
1111116HRDC domain
81110977899886CBS domain
222222222220Ribosomal protein L13
222222222220Ribosomal protein L4/L1 family
111111111110Clp protease
465333444440S1 RNA binding domain
111111118HIUase/Transthyretin family
444665786656AhpC/TSA family
345444444440tRNA synthetases class I (W and Y)
112111111111UvrD/REP helicase N-terminal domain
445644444443Rhodanese-like domain
222222222220Universal stress protein family
25282843272629303131298Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
576676666661tRNA synthetase class II core domain (G, H, P, S and T)
11111218Phage integrase family
222222222220Tetrapyrrole (Corrin/Porphyrin) Methylases
111111222214Glycosyl transferase family, a/b domain
12112222215Class II Aldolase and Adducin N-terminal domain
223334444433Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
653455666652Fes/CIP4, and EFC/F-BAR homology domain
443554446645IQ calmodulin-binding motif
223222222221Phosphoinositide 3-kinase family, accessory domain (PIK domain)
333433333331Phospholipase D Active site motif
111121111111Regulator of G protein signaling domain
444454444441GTPase-activator protein for Ras-like GTPase
6108585666666RasGEF domain
797683666664RasGEF N-terminal motif
11121113121213131313123RhoGAP domain
15141414121013131313131RhoGEF domain
444544444441SPRY domain
333343333331RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
444433333334Gelsolin repeat
9117997898784UBA/TS-N domain
15181417151516151817160PHD-finger
12122222216GGL domain
655456666655HECT-domain (ubiquitin-transferase)
32334221121Helix-hairpin-helix motif
132132222220MSP (Major sperm protein) domain
766875666663Ribonuclease III domain
222222222321Region in Clathrin and VPS
331333344431RanBP1 domain
222222222220PPIC-type PPIASE domain
142133443328Zn-finger in Ran binding protein and others
21222027202427282332244Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111111111110B-box zinc finger
2539321010111166Poly(ADP-ribose) polymerase catalytic domain
222211122217Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
93197701411172902542642342381,898F-box domain
111111111110Elongation factor 1 gamma, conserved domain
192111222223Calpain family cysteine protease
122323232222Copper fist DNA binding domain
676775555558CRAL/TRIO domain
121982712619212022166BTB/POZ domain
1517211915991211110Ricin-type beta-trefoil lectin domain
111111111110Inhibitor of Apoptosis domain