PFAM Domains • Pseudovirgaria hyperparasitica CBS 121739 v1.0
Annotations/GenomesCucbe1Dotsy1Melsp1Photr1Psehy1Settu1Symko1TotalAnnotation Description
PFAMs
8,8068,19410,3738,9018,0328,6618,38961,356
3147 transmembrane receptor (rhodopsin family)
48446245473937322ATPase family associated with various cellular activities (AAA)
42365743373936290ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
1414141414141397Elongation factor Tu GTP binding domain
1211111211141889Helix-loop-helix DNA-binding domain
432423321Hsp20/alpha crystallin family
888877753Hsp70 protein
8710778956KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
1111116SH2 domain
24242323232322162SH3 domain
1010101010101070Actin
54559765505322396Ankyrin repeat
31576325PAN domain
887887753ADP-ribosylation factor family
111024127121187Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
111222110Double-stranded RNA binding motif
17162016151719120EF hand
111111174Fe-4S binding domain
322222215Fibronectin type III domain
1121117Globin
13171413188992Glutathione S-transferase, C-terminal domain
11211118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
9778138658Homeodomain
543424325lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
11Lectin C-type domain
454454531Myosin head (motor domain)
948525410610713384863Cytochrome P450
175144142129140106107943Protein kinase domain
19132114101523115Pyridine nucleotide-disulphide oxidoreductase
25242924232522172Ras family
23251824162513144Response regulator receiver domain
433445225RNase H
64616058635862426RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
44Reverse transcriptase (RNA-dependent DNA polymerase)
331332217Copper/zinc superoxide dismutase (SODC)
222222113Iron/manganese superoxide dismutases, alpha-hairpin domain
8929121112384Subtilase family
755288715664134540Sugar (and other) transporter
1112151011121081Thioredoxin
223443119Trypsin
444444428Tubulin/FtsZ family, GTPase domain
334344324von Willebrand factor type A domain
73637776516164465Zinc finger, C2H2 type
69584263495144376Zinc finger, C3HC4 type (RING finger)
6865212847Zinc knuckle
222222214Protein-tyrosine phosphatase
135103165137107131154932short chain dehydrogenase
63529268546864461Zinc-binding dehydrogenase
655656639Thiolase, N-terminal domain
1517582021319171Beta-ketoacyl synthase, N-terminal domain
6675565402Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
987889958Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
324343423Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
14121818151713107E1-E2 ATPase
789879856Core histone H2A/H2B/H3/H4
6517776654Alpha amylase, catalytic domain
222221213Phorbol esters/diacylglycerol binding domain (C1 domain)
75810991058Bacterial transferase hexapeptide (six repeats)
334354325tRNA synthetases class I (I, L, M and V)
787879753Cyclin, N-terminal domain
23194228172317169Carboxylesterase family
443444427DNA polymerase family B
445454430ATP synthase subunit C
5311797244Peroxidase
11101011105966Beta-lactamase
336333425C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
30273326312727201Calcineurin-like phosphoesterase
11101611117470Cellulase (glycosyl hydrolase family 5)
787777851tRNA synthetases class II (D, K and N)
38404139454042285Mitochondrial carrier protein
112recA bacterial DNA recombination protein
17192115151616119Aminotransferase class I and II
910999101066Phosphoribosyl transferase domain
121291211121179Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222221213Ribosomal protein S12/S23
11114Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1412131111111284C2 domain
20181718181916126PH domain
1181011118968bZIP transcription factor
23152320161924140Aldehyde dehydrogenase family
1981572172021591602901,383Fungal Zn(2)-Cys(6) binuclear cluster domain
21243023242623171Cytochrome b5-like Heme/Steroid binding domain
443453124Oxidoreductase molybdopterin binding domain
1213191513161098Oxidoreductase NAD-binding domain
25283126252425184SNF2 family N-terminal domain
221222213Ribosomal protein S7p/S5e
26242124242520164Ubiquitin-conjugating enzyme
678776950Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111128Dihydrofolate reductase
1176154548Chitin recognition protein
355432325Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
542766434Cupin
223222215Annexin
22222111Eukaryotic-type carbonic anhydrase
21115Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
345524528Catalase
11111117Disintegrin
112UDP-glucoronosyl and UDP-glucosyl transferase
771210881567Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
647554738Thiamine pyrophosphate enzyme, central domain
434434628Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11136Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111139Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
134Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
101410101091073Kinesin motor domain
35322935283127217DnaJ domain
1414131414141497Proteasome subunit
76151078457Major intrinsic protein
11111117ATP synthase
34534322Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11112118Profilin
11111128Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
121211129111178Ubiquitin family
554525430Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
644656435Alkaline phosphatase
966938142Zinc carboxypeptidase
30294429212749229Aldo/keto reductase family
13142019161617115Myb-like DNA-binding domain
444444428Forkhead domain
213323115Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
233323218Ribosomal protein S14p/S29e
553555331FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
212121211
6610968853Flavodoxin
11215Protamine P1
11111117Calreticulin family
101212131310171Common central domain of tyrosinase
778789753Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
40403940414243285DEAD/DEAH box helicase
76768473767374532Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
21112119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
221212111Ribosomal protein L5
666686644Pyridoxal-dependent decarboxylase conserved domain
227222320Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
678767748Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
91010129111071Pyridoxal-phosphate dependent enzyme
15162014151514109NUDIX domain
655465536pfkB family carbohydrate kinase
7810766549Glycosyl hydrolases family 28
111115Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1316141413121294Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
1135Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
545555534Calponin homology (CH) domain
666665439Glutamine amidotransferases class-II
212222213Ribosomal protein S15
11111117Thaumatin family
222212112Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
223222215SRF-type transcription factor (DNA-binding and dimerisation domain)
6710675849GATA zinc finger
38304744303248269Amino acid permease
564556536Prolyl oligopeptidase family
322323217Ribosomal protein L30p/L7e
1212111210121483Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444731Aconitase family (aconitate hydratase)
539425129Glycosyl hydrolase family 10
425453427Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11Tetraspanin family
11112129Ribosomal protein S10p/S20e
464456332Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
445343326Polyprenyl synthetase
546444633Hexokinase
86127711657Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
877745543Rieske [2Fe-2S] domain
11Phytochrome region
112Proton-conducting membrane transporter
8910989962Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111218Hydroxymethylglutaryl-coenzyme A reductase
334333322FGGY family of carbohydrate kinases, N-terminal domain
1113Sodium:dicarboxylate symporter family
121016111110979Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
7798861055Cytidine and deoxycytidylate deaminase zinc-binding region
11121118Molybdopterin oxidoreductase
7565210641Chromo (CHRromatin Organisation MOdifier) domain
335333222Phosphatidylinositol-specific phospholipase C, Y domain
436333224Phosphatidylinositol-specific phospholipase C, X domain
961378101063D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222113Malic enzyme, N-terminal domain
2232121136-phosphogluconate dehydrogenase, C-terminal domain
851791181270Multicopper oxidase
11111111811972WW domain
11111117Ribosomal RNA adenine dimethylase
22222212Yeast PIR protein repeat
102104114112105117104758WD domain, G-beta repeat
433524526Heavy-metal-associated domain
534343325Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
222211212Ribosomal protein S8
211221312Ribosomal protein S11
454444429LIM domain
112Matrixin
215232116Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
221222213chorismate binding enzyme
43344422460s Acidic ribosomal protein
455454431Prenyltransferase and squalene oxidase repeat
666555639Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
10811878759Bromodomain
141012151114783Acyl-CoA dehydrogenase, C-terminal domain
15151416141415103Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
223222215Ribonuclease T2 family
333333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
81013101011870Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
222222315Transketolase, thiamine diphosphate binding domain
31642521Glycosyl hydrolases family 11
554545331Inositol monophosphatase family
443444528Glutaredoxin
433333625Isocitrate lyase family
222222214Serine hydroxymethyltransferase
444424628Iron-containing alcohol dehydrogenase
222212213Ribosomal protein L10
334343424KOW motif
1111116Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
233232217RF-1 domain
326413524Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
776767646Protein phosphatase 2C
332333219Nucleotidyl transferase
234322319Carbonic anhydrase
11112118Phosphoribulokinase / Uridine kinase family
869697550Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
446444632Arginase family
666666642MCM P-loop domain
222222214Squalene/phytoene synthase
8991198963FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
42436445545440342AMP-binding enzyme
444444327G-protein alpha subunit
98101277760HMG (high mobility group) box
1113NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
20211321132110119His Kinase A (phospho-acceptor) domain
332323319Armadillo/beta-catenin-like repeat
27253126222722180Tetratricopeptide repeat
334232320Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
111281110111174BRCA1 C Terminus (BRCT) domain
7512776751Glycosyl transferases group 1
346973436Glycosyl transferase family 2
331532219SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
69781435Pectate lyase
12111118ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
16224318213112163Phosphopantetheine attachment site
334333221Formyl transferase
910109109865Metallopeptidase family M24
1414151413151499Leucine Rich Repeat
46405343383855313alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
344324323PB1 domain
222222214Staphylococcal nuclease homologue
121081210121074Rab-GTPase-TBC domain
11111117Tudor domain
11111218WH1 domain
433433525Zinc finger, ZZ type
332333219HRDC domain
89109981164CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111128Clp protease
323443221S1 RNA binding domain
11111117HIUase/Transthyretin family
643544531AhpC/TSA family
542454428tRNA synthetases class I (W and Y)
112212110UvrD/REP helicase N-terminal domain
446564635Rhodanese-like domain
222222214Universal stress protein family
46384739343542281Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
989898859tRNA synthetase class II core domain (G, H, P, S and T)
221222112SpoU rRNA Methylase family
112Phage integrase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
11111319PDZ domain
755647943Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
554545533Fes/CIP4, and EFC/F-BAR homology domain
654555535IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
557545435Phospholipase D Active site motif
11211129Regulator of G protein signaling domain
334333423GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
444444428RasGEF N-terminal motif
799888857RhoGAP domain
665666641RhoGEF domain
334332321SPRY domain
333333321RNA polymerase Rpb1, domain 2
11211118Guanylate kinase
445343427Gelsolin repeat
896889755UBA/TS-N domain
18181418181620122PHD-finger
1111116GGL domain
556555637HECT-domain (ubiquitin-transferase)
122122212Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
5641066542Ribonuclease III domain
222222113Region in Clathrin and VPS
222222214RanBP1 domain
221222213PPIC-type PPIASE domain
113121312Zn-finger in Ran binding protein and others
21201520152013124Zinc finger C-x8-C-x5-C-x3-H type (and similar)
332312115Poly(ADP-ribose) polymerase catalytic domain
221212111Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
84715669526140433F-box domain
11111117Elongation factor 1 gamma, conserved domain
335333222Calpain family cysteine protease
211222212Copper fist DNA binding domain
555565637CRAL/TRIO domain
1925182012226122BTB/POZ domain
23319Ricin-type beta-trefoil lectin domain
11211118Inhibitor of Apoptosis domain
444443427Voltage gated chloride channel
225412218Caspase domain
151113141110680GDSL-like Lipase/Acylhydrolase
21111118Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
112NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
18173117151817133ABC transporter transmembrane region
22Integrase core domain
559758746FAD binding domain
671451112358Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222212213ribosomal L5P family C-terminus
565665639Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
666666541Elongation factor G C-terminus
456544432HMGL-like
443444427DnaJ central domain
433322219Starch binding domain
332222216Ribosomal protein L1p/L10e family
8610989656Cation transporting ATPase, C-terminus
10713101011869Cation transporter/ATPase, N-terminus
211221110dUTPase
444444731Aconitase C-terminal domain
343333423Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
1516571821299165Acyl transferase domain
11111117Urease beta subunit
758858849Dihydrodipicolinate synthetase family
32283834313431228haloacid dehalogenase-like hydrolase
747876948Glycosyl hydrolases family 2
12151619109687Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11111117Acylphosphatase
11111117Adenylosuccinate synthetase
332313217Asparaginase, N-terminal
11112129Peptidase S24-like
11111117Inorganic pyrophosphatase
59161399768Glycosyl hydrolases family 16
331432218Glycosyl hydrolases family 15
6512866851NADH:flavin oxidoreductase / NADH oxidase family
2332431183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
322335220Glycosyl hydrolase family 20, catalytic domain
446544330HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
23225224152611173GMC oxidoreductase
434334223Asparagine synthase
8620981061Fungal cellulose binding domain
666656641Septin
11211118EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
233312115Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
334343424tRNA synthetases class I (E and Q), catalytic domain
211212110tRNA synthetases class I (R)
444455430XPG N-terminal domain
101116178121387Metallo-beta-lactamase superfamily
133119F5/8 type C domain
323222317Choline/Carnitine o-acyltransferase
11111117Putative esterase
11Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
576754640Dioxygenase
332333320CNH domain
11212119Diacylglycerol kinase catalytic domain
989888757Dual specificity phosphatase, catalytic domain
332323218P21-Rho-binding domain
1213121213131388PX domain
333343322Ras association (RalGDS/AF-6) domain
665656539UBX domain
443444427VHS domain
11111117Phosphoinositide 3-kinase C2
223222417DAHP synthetase I family
891310710966Carbon-nitrogen hydrolase
213212213N-acetyltransferase
11111128Prephenate dehydratase
544547534Syntaxin
555555535Pumilio-family RNA binding repeat
776767747Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
112112210Histidinol dehydrogenase
444444428impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
52841424Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
874847139POT family
1111116PWWP domain
23192122181911133SET domain
1110796101568Isochorismatase family
444355126Permease family
1111