PFAM Domains • Absidia repens NRRL 1336 v1.0
Annotations/GenomesAbsrep1Bacci1Lichy1Morel2Mucci2Phybl2Rhimi1_1Umbra1TotalAnnotation Description
PFAMs
14,49913,47810,46610,1609,5849,2168,6268,51584,544
227 transmembrane receptor (Secretin family)
45154333287 transmembrane sweet-taste receptor of 3 GCPR
5953454744483840374ATPase family associated with various cellular activities (AAA)
5467609452483435444ABC transporter
1612569127774ATP synthase alpha/beta family, nucleotide-binding domain
13127EGF-like domain
3325191917211818170Elongation factor Tu GTP binding domain
7075512637353931364Helix-loop-helix DNA-binding domain
142577228Hsp20/alpha crystallin family
271914141112109116Hsp70 protein
2019151314121313119KH domain
1111116SH2 domain
5589653941374845419SH3 domain
131612111111111095Actin
1571515942374564384Ankyrin repeat
13151121121099100ADP-ribosylation factor family
3135273827332023234Eukaryotic aspartyl protease
10795777658Cyclic nucleotide-binding domain
11Cystatin domain
112Cytochrome b(C-terminal)/b6/petD
1135Cytochrome b/b6/petB
4233112117Cytochrome c
2133111214Double-stranded RNA binding motif
254444343353334288EF hand
121111184Fe-4S binding domain
2221111111Fibronectin type III domain
142222114Globin
92012141371115101Glutathione S-transferase, C-terminal domain
4622333124Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3255371227282918238Homeodomain
55Kazal-type serine protease inhibitor domain
6865553341lactate/malate dehydrogenase, NAD binding domain
22Lectin C-type domain
18211571716168118Myosin head (motor domain)
4385643041543549401Cytochrome P450
3233582772022372202101651,992Protein kinase domain
1723191118161516135Pyridine nucleotide-disulphide oxidoreductase
6982594160545139455Ras family
2630332015181720179Response regulator receiver domain
21252113RNase H
1151371098888979695825RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1337Reverse transcriptase (RNA-dependent DNA polymerase)
4535323227Copper/zinc superoxide dismutase (SODC)
2112211111Iron/manganese superoxide dismutases, alpha-hairpin domain
2331192216241511161Subtilase family
4166461447282247311Sugar (and other) transporter
2118141915131613129Thioredoxin
11Thyroglobulin type-1 repeat
213Trefoil (P-type) domain
6555423636Trypsin
1113136898674Tubulin/FtsZ family, GTPase domain
33von Willebrand factor type A domain
431741271051402038769948Zinc finger, C2H2 type
496706964556062480Zinc finger, C3HC4 type (RING finger)
1818211845702319232Zinc knuckle
5733655337Protein-tyrosine phosphatase
3349455245332771355short chain dehydrogenase
2346283029232334236Zinc-binding dehydrogenase
99661055656Thiolase, N-terminal domain
3322322219Beta-ketoacyl synthase, N-terminal domain
25474442322Fe-2S iron-sulfur cluster binding domain
2332222117Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
1113Cytochrome C oxidase subunit II, periplasmic domain
141311109109884Glutamine amidotransferase class-I
2215131211151111110TCP-1/cpn60 chaperonin family
11ATP synthase A chain
8975565449Glutamine synthetase, catalytic domain
2212111111Triosephosphate isomerase
4949263530262625266E1-E2 ATPase
202124141420149136Core histone H2A/H2B/H3/H4
213Copper binding proteins, plastocyanin/azurin family
1233111618Alpha amylase, catalytic domain
141714847111085Phorbol esters/diacylglycerol binding domain (C1 domain)
118868581064Bacterial transferase hexapeptide (six repeats)
7645444438tRNA synthetases class I (I, L, M and V)
1818211518182016144Cyclin, N-terminal domain
230311643Carboxylesterase family
5545544537DNA polymerase family B
5836544439ATP synthase subunit C
1111116Legume lectin domain
3421423221Peroxidase
131811428Beta-lactamase
2133241218C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
4249393537343329298Calcineurin-like phosphoesterase
10556344845Cellulase (glycosyl hydrolase family 5)
8866666652tRNA synthetases class II (D, K and N)
7480666263545245496Mitochondrial carrier protein
2427211720201815162Aminotransferase class I and II
714138131110985Phosphoribosyl transferase domain
1415151415141611114Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1121211110Phosphoglycerate kinase
5344333328Ribosomal protein S4/S9 N-terminal domain
8443444334Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
2111221111Chaperonin 10 Kd subunit
2436323123222019207C2 domain
6685793244485345452PH domain
3848321528192613219bZIP transcription factor
2120251615121213134Aldehyde dehydrogenase family
8892804046475260505Fungal Zn(2)-Cys(6) binuclear cluster domain
4160422841393730318Cytochrome b5-like Heme/Steroid binding domain
1234211216Oxidoreductase molybdopterin binding domain
1519171316131314120Oxidoreductase NAD-binding domain
2926242220202221184SNF2 family N-terminal domain
5452433329Ribosomal protein S7p/S5e
3226232522202220190Ubiquitin-conjugating enzyme
911107887666Isocitrate/isopropylmalate dehydrogenase
6643544436Ribosomal Proteins L2, RNA binding domain
4553444332Hsp90 protein
5423362227Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2221222215Dihydrofolate reductase
11Chitin recognition protein
34811612338Cysteine-rich secretory protein family
6541543230Ribosomal protein S3, C-terminal domain
22Annexin
22Eukaryotic-type carbonic anhydrase
56556444392-oxoacid dehydrogenases acyltransferase (catalytic domain)
3733423328Catalase
4624322326Disintegrin
82051017556UDP-glucoronosyl and UDP-glucosyl transferase
6854665545Aminotransferase class-III
5743443333Ribosomal protein S19
111111118DNA gyrase B
4721633329Thiamine pyrophosphate enzyme, central domain
6445443434Lyase
5534333329Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
2123222418Ferritin-like domain
3432222119Adenylate and Guanylate cyclase catalytic domain
2222111112ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
2211111110Indole-3-glycerol phosphate synthase
5443333227Pyruvate kinase, barrel domain
4136291528202818215Kinesin motor domain
4645353339343730299DnaJ domain
2417141414141413124Proteasome subunit
3127221422Major intrinsic protein
221222112ATP synthase
22Glycosyl hydrolase family 1
1212838663583'5'-cyclic nucleotide phosphodiesterase
1112112110Profilin
5543454232Ribosomal protein L22p/L17e
5443333328Ribosomal protein L14p/L23e
1931233122232120190Ubiquitin family
7787646651Cofilin/tropomyosin-type actin-binding protein
666433433514-3-3 protein
5554433231Alkaline phosphatase
527Zinc carboxypeptidase
2542291726201828205Aldo/keto reductase family
2939373823203325244Myb-like DNA-binding domain
121410710106776Forkhead domain
111126Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
8542443333Ribosomal protein S14p/S29e
10979665759FKBP-type peptidyl-prolyl cis-trans isomerase
2222122114Glutathione peroxidase
543534327
92117615131114106Flavodoxin
11Tropomyosin
2115121114Calreticulin family
69611755756Aminotransferase class-V
2322311115Ribonucleotide reductase, small chain
6152515648474745407DEAD/DEAH box helicase
9499889181747775679Helicase conserved C-terminal domain
121111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
6543433331Ribosomal protein L23
2334111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
6543354333Ribosomal protein L5
5645453638Pyridoxal-dependent decarboxylase conserved domain
4222121115Citrate synthase, C-terminal domain
6766666649GHMP kinases N terminal domain
111211811118880Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
10129910991179Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
2126181723162015156NUDIX domain
51064766650pfkB family carbohydrate kinase
551297332Glycosyl hydrolases family 28
5522433226Ribosomal protein L3
8643454438Ribosomal protein L11, RNA binding domain
12131181111101086Histidine phosphatase superfamily (branch 1)
211111119Thymidylate synthase
1611869127776ATP synthase alpha/beta chain, C terminal domain
1613161312912899Calponin homology (CH) domain
11Bacterial dnaA protein
7109101266565Glutamine amidotransferases class-II
5342323325Ribosomal protein S15
3234221219'Cold-shock' DNA-binding domain
678454438Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
4533423226Ribonucleotide reductase, all-alpha domain
6733443333Ribosomal protein S2
14141341079677SRF-type transcription factor (DNA-binding and dimerisation domain)
5265432436353922316GATA zinc finger
1235193721191825186Amino acid permease
79510666857Prolyl oligopeptidase family
5662554134Ribosomal protein L30p/L7e
36511524541Histidine phosphatase superfamily (branch 2)
1221111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
6666655646Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
3445313528Glycosyl hydrolases family 17
7553453335Ribosomal protein S5, N-terminal domain
6642645336Nucleoside diphosphate kinase
6764653441Tetraspanin family
6332333225Ribosomal protein S10p/S20e
4546251222222020212Arrestin (or S-antigen), N-terminal domain
1131111110Phosphoglucose isomerase
13122110Carbohydrate phosphorylase
2421222116SecY translocase
211111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
6444343331Ribosomal protein L6
6653545337Polyprenyl synthetase
15171261178884Hexokinase
159811787671Dynamin family
111211119Biopterin-dependent aromatic amino acid hydroxylase
2321221114Transcription factor TFIID (or TATA-binding protein, TBP)
6557554441Rieske [2Fe-2S] domain
1247Proton-conducting membrane transporter
141513101210101094Biotin-requiring enzyme
3421222218Phosphofructokinase
3323222219Ribosomal protein S17
2231312115Hydroxymethylglutaryl-coenzyme A reductase
6953666546FGGY family of carbohydrate kinases, N-terminal domain
33121111Sodium:dicarboxylate symporter family
1417141014111212104Enoyl-CoA hydratase/isomerase
5533444331Ribosomal protein S9/S16
2325332323Transcription factor TFIIB repeat
910106946761Cytidine and deoxycytidylate deaminase zinc-binding region
2213121113Molybdopterin oxidoreductase
10231516922186119Chromo (CHRromatin Organisation MOdifier) domain
11Phosphatidylinositol-specific phospholipase C, Y domain
11Phosphatidylinositol-specific phospholipase C, X domain
6665555543D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
6762545338Malic enzyme, N-terminal domain
213PEP-utilising enzyme, mobile domain
33213221176-phosphogluconate dehydrogenase, C-terminal domain
8786553547Multicopper oxidase
19261616871312117WW domain
4333333325Ribosomal RNA adenine dimethylase
1922041713541581621571451,543WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
11Calponin family repeat
5547543437Heavy-metal-associated domain
8854655445Adenylate kinase
4232222219Phosphoglucomutase/phosphomannomutase, C-terminal domain
4543333227Ribosomal protein S8
4433433327Ribosomal protein S11
201912913141512114LIM domain
8333144430Regulator of chromosome condensation (RCC1) repeat
5443424329Ribosomal protein S13/S18
12111118Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2422222218chorismate binding enzyme
14159687757160s Acidic ribosomal protein
22CUB domain
5444444433Prenyltransferase and squalene oxidase repeat
1217149911101092Protein kinase C terminal domain
11Spectrin repeat
2112111110Single-strand binding protein family
2211111110S-adenosylmethionine synthetase, N-terminal domain
2123171620141812141Bromodomain
11Bacterial regulatory proteins, tetR family
2121201815161712140Acyl-CoA dehydrogenase, C-terminal domain
2327232526212219186Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
12223143330Ribonuclease T2 family
262924720141412146HSF-type DNA-binding
3222222217SRP54-type protein, GTPase domain
3311221114Urease alpha-subunit, N-terminal domain
10794574349Serine carboxypeptidase
12151011131012992Phosphatidylinositol 3- and 4-kinase
3632222222Transketolase, thiamine diphosphate binding domain
11211129WHEP-TRS domain
2222222216Inositol monophosphatase family
68861056655Glutaredoxin
5421212219Isocitrate lyase family
4222222218Serine hydroxymethyltransferase
2211111110Iron-containing alcohol dehydrogenase
6312423122Ribosomal protein L10
1714591086776KOW motif
111111118Ribosomal protein L34
11114Ribosomal protein L33
2333323221RF-1 domain
11121118Sodium:solute symporter family
2211111110Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
2311211112IMP dehydrogenase / GMP reductase domain
4543332226Glucose-6-phosphate dehydrogenase, NAD binding domain
13171111101111690Protein phosphatase 2C
8773646546Nucleotidyl transferase
3323221117Carbonic anhydrase
2322212216Phosphoribulokinase / Uridine kinase family
10137118167678Fatty acid desaturase
6676766650MutS domain V
111121119Delta-aminolevulinic acid dehydratase
6352232326Arginase family
10668666654MCM P-loop domain
6331343225Squalene/phytoene synthase
2429251717181514159FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
3657473537363025303AMP-binding enzyme
201714812108998G-protein alpha subunit
2531331321231916181HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
121518137881293His Kinase A (phospho-acceptor) domain
7198710108776Armadillo/beta-catenin-like repeat
2857443936313736308Tetratricopeptide repeat
618914874874Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
9131110106121283BRCA1 C Terminus (BRCT) domain
109105987765Glycosyl transferases group 1
2856453639Glycosyl transferase family 2
5941237334SAM domain (Sterile alpha motif)
223311315linker histone H1 and H5 family
21211119Ribosomal protein L7/L12 C-terminal domain
11ribonuclease
3311221114Urease, gamma subunit
5767433338CoA-ligase
4985884652Phosphopantetheine attachment site
2222222216Formyl transferase
11Cellulose binding domain
1916131315141512117Metallopeptidase family M24
1445356233332726275Leucine Rich Repeat
1033303925231632208alpha/beta hydrolase fold
4445333329RNA polymerase Rpb2, domain 6
181717118108897PB1 domain
2222222216Staphylococcal nuclease homologue
4145321627292220232Rab-GTPase-TBC domain
111111118Tudor domain
4322211217WH1 domain
7967555751Zinc finger, ZZ type
2211211212HRDC domain
2524171518181514146CBS domain
5643354232Ribosomal protein L13
4542443228Ribosomal protein L4/L1 family
111111118Clp protease
4457334535S1 RNA binding domain
111211119HIUase/Transthyretin family
7865555748AhpC/TSA family
5444444433tRNA synthetases class I (W and Y)
41121110UvrD/REP helicase N-terminal domain
1291188871073Rhodanese-like domain
151793121291087Universal stress protein family
2949334643272839294Acetyltransferase (GNAT) family
2111121110SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
101212111111121190tRNA synthetase class II core domain (G, H, P, S and T)
3333333324SpoU rRNA Methylase family
3333332323Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
121116PDZ domain
2221222215Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
112Diacylglycerol kinase accessory domain
131286668463Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
1612104128101183Fes/CIP4, and EFC/F-BAR homology domain
712147989672IQ calmodulin-binding motif
3333333223Phosphoinositide 3-kinase family, accessory domain (PIK domain)
101575887565Phospholipase D Active site motif
1912738107470Regulator of G protein signaling domain
101394101010672GTPase-activator protein for Ras-like GTPase
2732201117181911155RasGEF domain
2023149910116102RasGEF N-terminal motif
5049382233293123275RhoGAP domain
4651411631282722262RhoGEF domain
1312136121011885SPRY domain
5454333330RNA polymerase Rpb1, domain 2
111211119Guanylate kinase
10897785660Gelsolin repeat
1422162313151819140UBA/TS-N domain
2538312323263128225PHD-finger
7221334426GGL domain
1313119109101085HECT-domain (ubiquitin-transferase)
1112212111Helix-hairpin-helix motif
11BRCA2 repeat
5253122525MSP (Major sperm protein) domain
1334323322Ribonuclease III domain
7333222224Region in Clathrin and VPS
3424222221RanBP1 domain
1322222216PPIC-type PPIASE domain
6443244431Zn-finger in Ran binding protein and others
2127272117142121169Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1214B-box zinc finger
212111210Poly(ADP-ribose) polymerase catalytic domain
11114Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
121851041841052027668936F-box domain
2421221115Elongation factor 1 gamma, conserved domain
111211119Calpain family cysteine protease
7962676447Copper fist DNA binding domain
121610131087783CRAL/TRIO domain
202117177311213138BTB/POZ domain
131611878131086Ricin-type beta-trefoil lectin domain
21111118Inhibitor of Apoptosis domain
2333222219Voltage gated chloride channel
4635554133Caspase domain
111410515891183GDSL-like Lipase/Acylhydrolase
71092255444Poly-adenylate binding protein, unique domain
2111117POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1931295425241116209ABC transporter transmembrane region
1427Integrase core domain
89104897863FAD binding domain
123211212Condensation domain
2212111111S-adenosyl-L-homocysteine hydrolase, NAD binding domain
4882332232HAMP domain
6554454336ribosomal L5P family C-terminus
121377798770Insulinase (Peptidase family M16)
9796644550Dehydrogenase E1 component
111111118Lumazine binding domain
12988778766Elongation factor G C-terminus
7674664545HMGL-like
11765765552DnaJ central domain
11Sulfotransferase domain
11Starch binding domain
5432333124Ribosomal protein L1p/L10e family
1922141713131212122Cation transporting ATPase, C-terminus
2832152418151617165Cation transporter/ATPase, N-terminus
111111118dUTPase
6664655644Aconitase C-terminal domain
7964775550Amino acid kinase family
2211111110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
4423322121Acyl transferase domain
3311221114Urease beta subunit
233312216Dihydrodipicolinate synthetase family
3570415049423640363haloacid dehalogenase-like hydrolase
11Glycosyl hydrolases family 2
102211111481114101Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
2113111111Adenylosuccinate synthetase
211111119Asparaginase, N-terminal
3433334326Peptidase S24-like
5452444230Inorganic pyrophosphatase
11Subtilisin inhibitor-like
611610647959Glycosyl hydrolases family 16
4541333326Glycosyl hydrolases family 15
1227891217106101NADH:flavin oxidoreductase / NADH oxidase family
22222222163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
5647444842Glycosyl hydrolase family 20, catalytic domain
4444434330HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
10916553443GMC oxidoreductase
4535723332Asparagine synthase
2113613Fungal cellulose binding domain
1922221414161410131Septin
3221242218EF-1 guanine nucleotide exchange domain
1311211111Homoserine dehydrogenase
411118Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif