PFAM Domains • Phycomyces blakesleeanus UBC1 v1.0
Annotations/GenomesPhybl2Phybla1PnitS607_1PnitS608_1PnitS609_1Spifus1TotalAnnotation Description
PFAMs
9,21610,97210,86311,13211,0879,37162,641
111147 transmembrane receptor (Secretin family)
331223147 transmembrane sweet-taste receptor of 3 GCPR
484643454642270ATPase family associated with various cellular activities (AAA)
484845464528260ABC transporter
1212288850ATP synthase alpha/beta family, nucleotide-binding domain
211718171819110Elongation factor Tu GTP binding domain
353836404033222Helix-loop-helix DNA-binding domain
122829313313146Hsp70 protein
12121010101064KH domain
11SH2 domain
373235333531203SH3 domain
11121112111572Actin
379131513996Ankyrin repeat
10111111111165ADP-ribosylation factor family
333433353621192Eukaryotic aspartyl protease
76777539Cyclic nucleotide-binding domain
1111116Cytochrome c
1122219Double-stranded RNA binding motif
353222347EF hand
114Fe-4S binding domain
11Fibronectin type III domain
213Globin
787651043Glutathione S-transferase, C-terminal domain
33333217Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
282120212116127Homeodomain
55444325lactate/malate dehydrogenase, NAD binding domain
16151615161492Myosin head (motor domain)
545244464677319Cytochrome P450
2202242222292322051,332Protein kinase domain
16161515141187Pyridine nucleotide-disulphide oxidoreductase
545454545551322Ras family
182019182013108Response regulator receiver domain
23112312RNase H
9710210110110094595RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
33Reverse transcriptase (RNA-dependent DNA polymerase)
22222212Copper/zinc superoxide dismutase (SODC)
1111116Iron/manganese superoxide dismutases, alpha-hairpin domain
242520212015125Subtilase family
282827273021161Sugar (and other) transporter
13121212121172Thioredoxin
22222111Trypsin
97354331Tubulin/FtsZ family, GTPase domain
2034749524024415Zinc finger, C2H2 type
556666685Zinc finger, C3HC4 type (RING finger)
70101615189138Zinc knuckle
58777741Protein-tyrosine phosphatase
332723272726163short chain dehydrogenase
232219222221129Zinc-binding dehydrogenase
56766434Thiolase, N-terminal domain
23322214Beta-ketoacyl synthase, N-terminal domain
41111192Fe-2S iron-sulfur cluster binding domain
22222111Enolase, C-terminal TIM barrel domain
1010111111861Glutamine amidotransferase class-I
15151616171493TCP-1/cpn60 chaperonin family
65666332Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
263734363531199E1-E2 ATPase
20181414181498Core histone H2A/H2B/H3/H4
1111116Alpha amylase, catalytic domain
71091010652Phorbol esters/diacylglycerol binding domain (C1 domain)
54544628Bacterial transferase hexapeptide (six repeats)
46566633tRNA synthetases class I (I, L, M and V)
18131515161289Cyclin, N-terminal domain
12243416Carboxylesterase family
44444424DNA polymerase family B
44444323ATP synthase subunit C
1111116Legume lectin domain
22222212Peroxidase
44444424C-5 cytosine-specific DNA methylase
342929323327184Calcineurin-like phosphoesterase
45555327Cellulase (glycosyl hydrolase family 5)
65666635tRNA synthetases class II (D, K and N)
545354565446317Mitochondrial carrier protein
201918191912107Aminotransferase class I and II
115555536Phosphoribosyl transferase domain
14141214141482Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111115Phosphoglycerate kinase
33332317Ribosomal protein S4/S9 N-terminal domain
44444424Ribosomal protein S12/S23
22222111Chaperonin 10 Kd subunit
221918182119117C2 domain
483736393631227PH domain
192728282923154bZIP transcription factor
12131213141579Aldehyde dehydrogenase family
474138353925225Fungal Zn(2)-Cys(6) binuclear cluster domain
393334343529204Cytochrome b5-like Heme/Steroid binding domain
1111116Oxidoreductase molybdopterin binding domain
13121213131578Oxidoreductase NAD-binding domain
202324242522138SNF2 family N-terminal domain
34455425Ribosomal protein S7p/S5e
202020202118119Ubiquitin-conjugating enzyme
87888544Isocitrate/isopropylmalate dehydrogenase
42444422Ribosomal Proteins L2, RNA binding domain
44544425Hsp90 protein
66855232Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
22222212Dihydrofolate reductase
112228Cysteine-rich secretory protein family
44444323Ribosomal protein S3, C-terminal domain
444444242-oxoacid dehydrogenases acyltransferase (catalytic domain)
22222111Catalase
22212211Disintegrin
13333215UDP-glucoronosyl and UDP-glucosyl transferase
66666535Aminotransferase class-III
44444424Ribosomal protein S19
1111116DNA gyrase B
33333217Thiamine pyrophosphate enzyme, central domain
44444424Lyase
33333217Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22222212Ferritin-like domain
22222212Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
111115Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
33233115Pyruvate kinase, barrel domain
202223222233142Kinesin motor domain
343737393930216DnaJ domain
14141414141484Proteasome subunit
22222111Major intrinsic protein
21221210ATP synthase
666665353'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
55522524Ribosomal protein L22p/L17e
33333318Ribosomal protein L14p/L23e
232022232215125Ubiquitin family
47787639Cofilin/tropomyosin-type actin-binding protein
3333331814-3-3 protein
33333419Alkaline phosphatase
201921212212115Aldo/keto reductase family
202022232318126Myb-like DNA-binding domain
1010111111962Forkhead domain
111115Glycosyl hydrolases family 32 N-terminal domain
14444421Ribosomal protein L16p/L10e
44433321Ribosomal protein S14p/S29e
65566634FKBP-type peptidyl-prolyl cis-trans isomerase
22222111Glutathione peroxidase
33
138910101262Flavodoxin
22212110Calreticulin family
56566533Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
475550555855320DEAD/DEAH box helicase
748579858386492Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
33444422Ribosomal protein L23
111115Pyridoxal-dependent decarboxylase, C-terminal sheet domain
54444425Ribosomal protein L5
55555227Pyridoxal-dependent decarboxylase conserved domain
23333115Citrate synthase, C-terminal domain
66666636GHMP kinases N terminal domain
1111101111660Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
99999853Pyridoxal-phosphate dependent enzyme
112'Paired box' domain
161716171818102NUDIX domain
65555531pfkB family carbohydrate kinase
9988842Glycosyl hydrolases family 28
33333318Ribosomal protein L3
54555428Ribosomal protein L11, RNA binding domain
111091010858Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
1212277848ATP synthase alpha/beta chain, C terminal domain
9151211121473Calponin homology (CH) domain
64444224Glutamine amidotransferases class-II
22222212Ribosomal protein S15
222219'Cold-shock' DNA-binding domain
55554428Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
22222212Ribonucleotide reductase, all-alpha domain
44443423Ribosomal protein S2
77888442SRF-type transcription factor (DNA-binding and dimerisation domain)
353939394032224GATA zinc finger
197877856Amino acid permease
67656737Prolyl oligopeptidase family
56777638Ribosomal protein L30p/L7e
22222212Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
55555429Aconitase family (aconitate hydratase)
13222212Glycosyl hydrolases family 17
55534325Ribosomal protein S5, N-terminal domain
46554226Nucleoside diphosphate kinase
53555427Tetraspanin family
32333317Ribosomal protein S10p/S20e
222729303020158Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
22122110SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
44344322Ribosomal protein L6
44444424Polyprenyl synthetase
78888746Hexokinase
810101010856Dynamin family
1111116Biopterin-dependent aromatic amino acid hydroxylase
2221119Transcription factor TFIID (or TATA-binding protein, TBP)
55555328Rieske [2Fe-2S] domain
1011101111962Biotin-requiring enzyme
22221211Phosphofructokinase
22222212Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
67777539FGGY family of carbohydrate kinases, N-terminal domain
1111116Sodium:dicarboxylate symporter family
119788548Enoyl-CoA hydratase/isomerase
44444424Ribosomal protein S9/S16
33333217Transcription factor TFIIB repeat
46666533Cytidine and deoxycytidylate deaminase zinc-binding region
22221110Molybdopterin oxidoreductase
2291189968Chromo (CHRromatin Organisation MOdifier) domain
54555226D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
44444323Malic enzyme, N-terminal domain
222221116-phosphogluconate dehydrogenase, C-terminal domain
55555530Multicopper oxidase
7131414151477WW domain
33233418Ribosomal RNA adenine dimethylase
162158164168167156975WD domain, G-beta repeat
11Calponin family repeat
45544426Heavy-metal-associated domain
56667636Adenylate kinase
23333317Phosphoglucomutase/phosphomannomutase, C-terminal domain
33333318Ribosomal protein S8
33333217Ribosomal protein S11
14161317151489LIM domain
46766534Regulator of chromosome condensation (RCC1) repeat
23344521Ribosomal protein S13/S18
11114Tau and MAP protein, tubulin-binding repeat
22222212chorismate binding enzyme
7768994660s Acidic ribosomal protein
44444525Prenyltransferase and squalene oxidase repeat
119789650Protein kinase C terminal domain
1111116Single-strand binding protein family
1113Type II/IV secretion system protein
1111116S-adenosylmethionine synthetase, N-terminal domain
14171717171597Bromodomain
16161717171295Acyl-CoA dehydrogenase, C-terminal domain
211818191817111Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
44333320Ribonuclease T2 family
14141414151485HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
22222111Urease alpha-subunit, N-terminal domain
77656334Serine carboxypeptidase
10810108955Phosphatidylinositol 3- and 4-kinase
22222212Transketolase, thiamine diphosphate binding domain
1111116WHEP-TRS domain
2222311Inositol monophosphatase family
54455528Glutaredoxin
1111116Isocitrate lyase family
22222212Serine hydroxymethyltransferase
1111127Iron-containing alcohol dehydrogenase
23244318Ribosomal protein L10
810111111657KOW motif
1111116Ribosomal protein L34
111115Ribosomal protein L33
23333317RF-1 domain
1111127Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111127IMP dehydrogenase / GMP reductase domain
33232114Glucose-6-phosphate dehydrogenase, NAD binding domain
1111111111863Protein phosphatase 2C
45554528Nucleotidyl transferase
22222111Carbonic anhydrase
12222211Phosphoribulokinase / Uridine kinase family
16161516161392Fatty acid desaturase
66666535MutS domain V
1111116Delta-aminolevulinic acid dehydratase
33233115Arginase family
66466634MCM P-loop domain
45555327Squalene/phytoene synthase
182020211915113FHA domain
363436363636214AMP-binding enzyme
10101010101161G-protein alpha subunit
232423212121133HMG (high mobility group) box
88888747His Kinase A (phospho-acceptor) domain
106777643Armadillo/beta-catenin-like repeat
312121202216131Tetratricopeptide repeat
77778743Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
65776536BRCA1 C Terminus (BRCT) domain
87767641Glycosyl transferases group 1
52222316Glycosyl transferase family 2
36555327SAM domain (Sterile alpha motif)
2222210linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
22222111Urease, gamma subunit
33333116CoA-ligase
87999749Phosphopantetheine attachment site
22222212Formyl transferase
14141414141383Metallopeptidase family M24
331215171612105Leucine Rich Repeat
236575652alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
10121112131169PB1 domain
22222212Staphylococcal nuclease homologue
293229313125177Rab-GTPase-TBC domain
1111127Tudor domain
12222211WH1 domain
55666634Zinc finger, ZZ type
1111217HRDC domain
181616181715100CBS domain
55655430Ribosomal protein L13
44344423Ribosomal protein L4/L1 family
1111116Clp protease
34545425S1 RNA binding domain
1111116HIUase/Transthyretin family
56666433AhpC/TSA family
43444423tRNA synthetases class I (W and Y)
111115UvrD/REP helicase N-terminal domain
8151415151279Rhodanese-like domain
1212131413872Universal stress protein family
271921212114123Acetyltransferase (GNAT) family
22222111SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
118788951tRNA synthetase class II core domain (G, H, P, S and T)
33333217SpoU rRNA Methylase family
33332216Tetrapyrrole (Corrin/Porphyrin) Methylases
11114Glycosyl transferase family, a/b domain
112PDZ domain
22222212Class II Aldolase and Adducin N-terminal domain
2222210Diacylglycerol kinase accessory domain
69101110753Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
8121314151173Fes/CIP4, and EFC/F-BAR homology domain
88778745IQ calmodulin-binding motif
32332215Phosphoinositide 3-kinase family, accessory domain (PIK domain)
86665435Phospholipase D Active site motif
10182019191298Regulator of G protein signaling domain
10111010101061GTPase-activator protein for Ras-like GTPase
182020202017115RasGEF domain
10101413141374RasGEF N-terminal motif
293431333528190RhoGAP domain
283434343425189RhoGEF domain
1011111111761SPRY domain
33333318RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
88898546Gelsolin repeat
15121111121071UBA/TS-N domain
262021232417131PHD-finger
32444320GGL domain
9109991056HECT-domain (ubiquitin-transferase)
1111116Helix-hairpin-helix motif
23333216MSP (Major sperm protein) domain
2111117Ribonuclease III domain
26666531Region in Clathrin and VPS
22222212RanBP1 domain
22222212PPIC-type PPIASE domain
45435526Zn-finger in Ran binding protein and others
14141012131578Zinc finger C-x8-C-x5-C-x3-H type (and similar)
24211111B-box zinc finger
1111116Poly(ADP-ribose) polymerase catalytic domain
121116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
202212923247306F-box domain
22222111Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
76677437Copper fist DNA binding domain
88989547CRAL/TRIO domain
313527252519162BTB/POZ domain
8910109753Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
21222211Voltage gated chloride channel
56667333Caspase domain
88889748GDSL-like Lipase/Acylhydrolase
56777638Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
242422232311127ABC transporter transmembrane region
44Integrase core domain
978991153FAD binding domain
111115Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
33333217HAMP domain
54555428ribosomal L5P family C-terminus
9101010101160Insulinase (Peptidase family M16)
44444424Dehydrogenase E1 component
1111116Lumazine binding domain
77677741Elongation factor G C-terminus
11RNA dependent RNA polymerase
66666636HMGL-like
65777436DnaJ central domain
36665632Ribosomal protein L1p/L10e family
13151215151383Cation transporting ATPase, C-terminus
152119222115113Cation transporter/ATPase, N-terminus
111115dUTPase
55555429Aconitase C-terminal domain
77777439Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
22222212Acyl transferase domain
22222111Urease beta subunit
111115Dihydrodipicolinate synthetase family
422723262522165haloacid dehalogenase-like hydrolase
89989952Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
33333318Peptidase S24-like
44444323Inorganic pyrophosphatase
11114Virus coat protein (TMV like)
45554326Glycosyl hydrolases family 16
35555528Glycosyl hydrolases family 15
171811161779NADH:flavin oxidoreductase / NADH oxidase family
222222123-hydroxyacyl-CoA dehydrogenase, C-terminal domain
44444424Glycosyl hydrolase family 20, catalytic domain
33332418HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
55444224GMC oxidoreductase
22222212Asparagine synthase
111115Fungal cellulose binding domain
16151616161594Septin
44444222EF-1 guanine nucleotide exchange domain
1122219Homoserine dehydrogenase
12222514Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
33333217tRNA synthetases class I (R)
56777638XPG N-terminal domain
1110999755Metallo-beta-lactamase superfamily
111115F5/8 type C domain
44444727Choline/Carnitine o-acyltransferase
1111116Putative esterase
22222111Glycosyl hydrolase family 9
1111116Ferrochelatase
33333318Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
88788746RNB domain
11121012121168CNH domain
44444323Diacylglycerol kinase catalytic domain
13131213131276Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
811111111961P21-Rho-binding domain
253132322933182PX domain
45665632Ras association (RalGDS/AF-6) domain
66887641UBX domain
76767639VHS domain
1113Phosphoinositide 3-kinase C2
32233316DAHP synthetase I family
54555529Carbon-nitrogen hydrolase
1111116Prephenate dehydratase
76666637Syntaxin
9108109753Pumilio-family RNA binding repeat
67677639Histone-like transcription factor (CBF/NF-Y) and archaeal histone
22222111Pterin binding enzyme
22222111ER lumen protein retaining receptor
12222211Glycoprotease family
1111116Histidinol dehydrogenase
33333217impB/mucB/samB family
11114Ribonuclease P
33
33333318Ribosomal L15
48656837Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
33444321Ribosomal L29 protein
23233316Ribosomal L39 protein
22122211Ribosomal S17
1111127Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
12222211RNA pseudouridylate synthase
77777742Histone deacetylase domain
111115Glycosyltransferase family 10 (fucosyltransferase) C-term
33333318POT family
22132414PWWP domain
172118191820113SET domain
22222212Isochorismatase family
65666231Permease family
33333217Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
46565531XPG I-region
1111116DNA photolyase
1113Zinc dependent phospholipase C
22222212Cytosol aminopeptidase family, catalytic domain
221117Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
65555531Acyl CoA binding protein
66666636Cullin family
111115Elongation factor TS
53333219FAD binding domain
77888644EamA-like transporter family
22
98998851ThiF family
22222212Ribosomal family S4e
32222213Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
44444222Ammonium Transporter Family
78777541Sulfate permease family
33333318MATH domain
1111116Uncharacterized protein family UPF0004
22222111Dehydratase family
22222111Transaldolase/Fructose-6-phosphate aldolase
44444323Mechanosensitive ion channel
23333216GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44444323Adaptor complexes medium subunit family
88888848Exonuclease
33333217Dipeptidyl peptidase IV (DPP IV) N-terminal region
33333217Glycosyl hydrolase family 3 N terminal domain
44344322Ribosomal protein L44
14443420Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
33333217Nucleosome assembly protein (NAP)
55555328Synaptobrevin
1111116GMP synthase C terminal domain
22222212Adenosine/AMP deaminase
111126Barwin family
44444424Oxidoreductase FAD-binding domain
22222212Histidine biosynthesis protein
77776741Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
44444222Carbamoyl-phosphate synthase small chain, CPSase domain
213PAS fold
33333318Probable molybdopterin binding domain
55565430Sec1 family
33333217GDP dissociation inhibitor
77777540Sodium/hydrogen exchanger family
12122210RNA polymerase Rpb3/RpoA insert domain
55555429Initiation factor 2 subunit family
22222212Electron transfer flavoprotein domain
1111116Uricase
32333317Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
22222111Gamma-glutamyltranspeptidase
213129Ribosomal L40e family
1111116GrpE
33543220TatD related DNase
23222213Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
11114Receptor L domain
56666635Dynamin central region
1111156-O-methylguanine DNA methyltransferase, DNA binding domain
55555328Carboxyl transferase domain
22222212UbiA prenyltransferase family
12222110Endoribonuclease L-PSP
3332314Phosphorylase superfamily
44344322Cys/Met metabolism PLP-dependent enzyme
34444221Glycosyl hydrolases family 31
1111116NADH ubiquinone oxidoreductase, 20 Kd subunit
1010899450ABC-2 type transporter
2222210Bestrophin, RFP-TM, chloride channel
34444322Amino-transferase class IV
109999652CDP-alcohol phosphatidyltransferase
1111116Calpain large subunit, domain III
21222211ATP dependent DNA ligase domain
111115FMN-dependent dehydrogenase
1111116Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
21111173-beta hydroxysteroid dehydrogenase/isomerase family
22222212Glycosyl hydrolases family 38 N-terminal domain
1111116Nitrite and sulphite reductase 4Fe-4S domain
22223112Presenilin
1111116Ribosomal protein S18
1111116Clathrin light chain
1111116Galactose-1-phosphate uridyl transferase, N-terminal domain