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PFAM Domains • Calocera viscosa v1.0
Annotations/GenomesAurde1Botbo1Calco1Calvi1Dacsp1Fomme1Phchr1Pirin1Schco2TotalAnnotation Description
PFAMs
9,0057,6247,9746,8957,6005,9277,1358,49260,652
4239414141384043325ATPase family associated with various cellular activities (AAA)
4540464137503546340ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
1915141614151415122Elongation factor Tu GTP binding domain
91011101211111286Helix-loop-helix DNA-binding domain
5434763941Hsp20/alpha crystallin family
1713999710781Hsp70 protein
9988888967KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
111111118SH2 domain
2421222228222726192SH3 domain
11TNFR/NGFR cysteine-rich region
171310912691187Actin
14921182020222145316Ankyrin repeat
87877613763ADP-ribosylation factor family
3126282835531529245Eukaryotic aspartyl protease
4222333322Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
111111118Cytochrome c
1354383111259Double-stranded RNA binding motif
2016161515242020146EF hand
111122194Fe-4S binding domain
111111118Fibronectin type III domain
112Globin
2318191519141214134Glutathione S-transferase, C-terminal domain
111111118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1256797111168Homeodomain
112Laminin EGF domain
3222222217lactate/malate dehydrogenase, NAD binding domain
5564559544Myosin head (motor domain)
15812911211812011390114954Cytochrome P450
3791661741202441201421611,506Protein kinase domain
1421221417161411129Pyridine nucleotide-disulphide oxidoreductase
2831282724283826230Ras family
1310131199131290Response regulator receiver domain
83111414941RNase H
6863615759597070507RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2161423Reverse transcriptase (RNA-dependent DNA polymerase)
11111128Copper/zinc superoxide dismutase (SODC)
3222232319Iron/manganese superoxide dismutases, alpha-hairpin domain
154435412350Subtilase family
2273917632472241404Sugar (and other) transporter
121214101210111394Thioredoxin
6555554540Tubulin/FtsZ family, GTPase domain
611346324von Willebrand factor type A domain
8141483354527798484Zinc finger, C2H2 type
6147474248264966386Zinc finger, C3HC4 type (RING finger)
1713141014711324176Zinc knuckle
3222222217Protein-tyrosine phosphatase
71130165115957540110801short chain dehydrogenase
4053604651571647370Zinc-binding dehydrogenase
5555563438Thiolase, N-terminal domain
8222621326Beta-ketoacyl synthase, N-terminal domain
42333333242Fe-2S iron-sulfur cluster binding domain
1122224115Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
9887877862Glutamine amidotransferase class-I
11101210139121087TCP-1/cpn60 chaperonin family
6333342327Glutamine synthetase, catalytic domain
111111118Triosephosphate isomerase
1213111012119987E1-E2 ATPase
1212121216161622118Core histone H2A/H2B/H3/H4
123Copper binding proteins, plastocyanin/azurin family
499105871264Alpha amylase, catalytic domain
5555556642Phorbol esters/diacylglycerol binding domain (C1 domain)
4767243437Bacterial transferase hexapeptide (six repeats)
4333363328tRNA synthetases class I (I, L, M and V)
1511911814121494Cyclin, N-terminal domain
92220222291723144Carboxylesterase family
4444344431DNA polymerase family B
3444233326ATP synthase subunit C
111118171242Peroxidase
12151212132360Beta-lactamase
6333553533C-5 cytosine-specific DNA methylase
3131343130192224222Calcineurin-like phosphoesterase
111091115816787Cellulase (glycosyl hydrolase family 5)
5555565642tRNA synthetases class II (D, K and N)
3736383634343636287Mitochondrial carrier protein
1215151614131316114Aminotransferase class I and II
57127556653Phosphoribosyl transferase domain
1414161812141214114Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222322217Ribosomal protein S12/S23
211111119Chaperonin 10 Kd subunit
451112929161419155C2 domain
2120161818181820149PH domain
5455684643bZIP transcription factor
2113151116191116122Aldehyde dehydrogenase family
15057494882353688545Fungal Zn(2)-Cys(6) binuclear cluster domain
2620201921232024173Cytochrome b5-like Heme/Steroid binding domain
21124111Oxidoreductase molybdopterin binding domain
118131161381181Oxidoreductase NAD-binding domain
2129252120121922169SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2318192021202021162Ubiquitin-conjugating enzyme
6777655548Isocitrate/isopropylmalate dehydrogenase
2132222216Ribosomal Proteins L2, RNA binding domain
2822332325Hsp90 protein
2222322217Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111219Dihydrofolate reductase
11Chitin recognition protein
7221112521Cysteine-rich secretory protein family
111112119Ribosomal protein S3, C-terminal domain
123129220Cupin
33Annexin
1135Chalcone and stilbene synthases, N-terminal domain
33333233232-oxoacid dehydrogenases acyltransferase (catalytic domain)
3233251221Catalase
111111118Disintegrin
2018127158UDP-glucoronosyl and UDP-glucosyl transferase
6565555542Aminotransferase class-III
2221222215Ribosomal protein S19
111111219DNA gyrase B
2232331420Thiamine pyrophosphate enzyme, central domain
3333333324Lyase
2232122216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111311110Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
1111211210Indole-3-glycerol phosphate synthase
421111212Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
118119101091078Kinesin motor domain
2724302727222927213DnaJ domain
1414141414141414112Proteasome subunit
19765281351Major intrinsic protein
111111118ATP synthase
4111521318Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
122111210Profilin
2222221114Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
1713141116121613112Ubiquitin family
6776546748Cofilin/tropomyosin-type actin-binding protein
111122121114-3-3 protein
2243121318Alkaline phosphatase
11226Zinc carboxypeptidase
3962825756532960438Aldo/keto reductase family
1410912111391189Myb-like DNA-binding domain
5222557836Forkhead domain
11125Glycosyl hydrolases family 32 N-terminal domain
112111119Ribosomal protein L16p/L10e
2222112214Ribosomal protein S14p/S29e
5866335541FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
2222221215
86997139768Flavodoxin
11Protamine P1
111111118Calreticulin family
523317122Common central domain of tyrosinase
58106639956Aminotransferase class-V
1111141313Ribonucleotide reductase, small chain
5846443941444367382DEAD/DEAH box helicase
10385806869597298634Helicase conserved C-terminal domain
11114Fructose-bisphosphate aldolase class-I
211111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
1122222214Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111118Ribosomal protein L5
7655434741Pyridoxal-dependent decarboxylase conserved domain
3133333322Citrate synthase, C-terminal domain
5554545538GHMP kinases N terminal domain
5676665546Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
10111098108874Pyridoxal-phosphate dependent enzyme
1213131115111614105NUDIX domain
5442422629pfkB family carbohydrate kinase
27661435346Glycosyl hydrolases family 28
2222222317Ribosomal protein L3
2221122214Ribosomal protein L11, RNA binding domain
10889767964Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
4444444432ATP synthase alpha/beta chain, C terminal domain
4645445537Calponin homology (CH) domain
6455545539Glutamine amidotransferases class-II
2222212114Ribosomal protein S15
66'Cold-shock' DNA-binding domain
45668321145Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2432322220Ribosomal protein S2
2222122417SRF-type transcription factor (DNA-binding and dimerisation domain)
91414149791288GATA zinc finger
3120211921161321162Amino acid permease
61078625751Prolyl oligopeptidase family
211111119Ribosomal protein L30p/L7e
12812101085974Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4555744438Aconitase family (aconitate hydratase)
112234618551Glycosyl hydrolase family 10
5142113219Glycosyl hydrolases family 17
2212222215Ribosomal protein S5, N-terminal domain
2222222216Nucleoside diphosphate kinase
13116Tetraspanin family
121222212Ribosomal protein S10p/S20e
111332516Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111129Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
4533333630Polyprenyl synthetase
3222222217Hexokinase
8864756953Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
3344532327Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
7888887963Biotin-requiring enzyme
111111118Phosphofructokinase
2221222215Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
2333434325FGGY family of carbohydrate kinases, N-terminal domain
971061285966Enoyl-CoA hydratase/isomerase
2432212218Ribosomal protein S9/S16
2222422218Transcription factor TFIIB repeat
6776555647Cytidine and deoxycytidylate deaminase zinc-binding region
11121118Molybdopterin oxidoreductase
712881161419130Chromo (CHRromatin Organisation MOdifier) domain
1222113416Phosphatidylinositol-specific phospholipase C, Y domain
2222114317Phosphatidylinositol-specific phospholipase C, X domain
7111310666766D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2111232315Malic enzyme, N-terminal domain
12211212126-phosphogluconate dehydrogenase, C-terminal domain
55851153648Multicopper oxidase
14129109613982WW domain
2121211212Ribosomal RNA adenine dimethylase
1601311271111901162931301,258WD domain, G-beta repeat
3553343430Heavy-metal-associated domain
3333333324Adenylate kinase
2322222116Phosphoglucomutase/phosphomannomutase, C-terminal domain
1111122110Ribosomal protein S8
2121112111Ribosomal protein S11
9566757550LIM domain
4333232323Regulator of chromosome condensation (RCC1) repeat
2322222217Ribosomal protein S13/S18
11
2222222216chorismate binding enzyme
333333432560s Acidic ribosomal protein
5444544434Prenyltransferase and squalene oxidase repeat
7454748746Protein kinase C terminal domain
11111117Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
111411111210101190Bromodomain
116107898968Acyl-CoA dehydrogenase, C-terminal domain
1514141414141417116Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
3432421120Ribonuclease T2 family
6565444438HSF-type DNA-binding
2232222217SRP54-type protein, GTPase domain
111111129Urease alpha-subunit, N-terminal domain
71416121421710101Serine carboxypeptidase
9988878865Phosphatidylinositol 3- and 4-kinase
1111121311Transketolase, thiamine diphosphate binding domain
21116121Glycosyl hydrolases family 11
3111118WHEP-TRS domain
2222321620Inositol monophosphatase family
5444434533Glutaredoxin
3222322319Isocitrate lyase family
4111111111Serine hydroxymethyltransferase
2754331429Iron-containing alcohol dehydrogenase
2222132216Ribosomal protein L10
5334564535KOW motif
2111117Ribosomal protein L34
4222222319RF-1 domain
1524231119Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
112111119DNA polymerase family A
211111119IMP dehydrogenase / GMP reductase domain
111111129Glucose-6-phosphate dehydrogenase, NAD binding domain
77788561361Protein phosphatase 2C
3333411119Nucleotidyl transferase
642244224Carbonic anhydrase
111111118Phosphoribulokinase / Uridine kinase family
96558651357Fatty acid desaturase
6776666650MutS domain V
111111118Delta-aminolevulinic acid dehydratase
2444332426Arginase family
6686666650MCM P-loop domain
1222111111Squalene/phytoene synthase
8566988959FHA domain
4133312926301231233AMP-binding enzyme
7655129201579G-protein alpha subunit
13991024151135126HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
87117569962His Kinase A (phospho-acceptor) domain
5233226427Armadillo/beta-catenin-like repeat
4533493263233827310Tetratricopeptide repeat
3554314328Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
1011111096101077BRCA1 C Terminus (BRCT) domain
5797546750Glycosyl transferases group 1
5333362429Glycosyl transferase family 2
612131317SAM domain (Sterile alpha motif)
3333422323linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
412411Pectate lyase
1124ribonuclease
111111129Urease, gamma subunit
5334333327CoA-ligase
145448631660Phosphopantetheine attachment site
2222212215Formyl transferase
89910109101176Metallopeptidase family M24
1413141215141216110Leucine Rich Repeat
4046513349231549306alpha/beta hydrolase fold
3353333326RNA polymerase Rpb2, domain 6
5555335536PB1 domain
4222222218Staphylococcal nuclease homologue
999997101173Rab-GTPase-TBC domain
111111118Tudor domain
3111121111WH1 domain
9455347340Zinc finger, ZZ type
11111117HRDC domain
9101110888872CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
4443424429S1 RNA binding domain
1111116HIUase/Transthyretin family
3655462738AhpC/TSA family
5444444433tRNA synthetases class I (W and Y)
111115UvrD/REP helicase N-terminal domain
5335363432Rhodanese-like domain
2212212214Universal stress protein family
1942412928242629238Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
6666666648tRNA synthetase class II core domain (G, H, P, S and T)
1326Phage integrase family
2222522219Tetrapyrrole (Corrin/Porphyrin) Methylases
111111129Glycosyl transferase family, a/b domain
123241215Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
3331323422Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
4445524634Fes/CIP4, and EFC/F-BAR homology domain
5463345434IQ calmodulin-binding motif
3222222217Phosphoinositide 3-kinase family, accessory domain (PIK domain)
6554345335Phospholipase D Active site motif
111111118Regulator of G protein signaling domain
4383444434GTPase-activator protein for Ras-like GTPase
7554666645RasGEF domain
8446716642RasGEF N-terminal motif
1612121314111313104RhoGAP domain
1612139128161399RhoGEF domain
3332443426SPRY domain
3333333324RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
3332243323Gelsolin repeat
8121058712870UBA/TS-N domain
1914191415111316121PHD-finger
1112229GGL domain
4576546643HECT-domain (ubiquitin-transferase)
3231241218Helix-hairpin-helix motif
233311215MSP (Major sperm protein) domain
16879429661Ribonuclease III domain
2222221215Region in Clathrin and VPS
3312133319RanBP1 domain
2222222216PPIC-type PPIASE domain
2131312417Zn-finger in Ran binding protein and others
2616161220181927154Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1113B-box zinc finger
522211111034Poly(ADP-ribose) polymerase catalytic domain
2122111111Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
266709547841001552541,071F-box domain
211111119Elongation factor 1 gamma, conserved domain
233124217Calpain family cysteine protease
2222131215Copper fist DNA binding domain
4564666542CRAL/TRIO domain
181518111371619117BTB/POZ domain
1121346927Ricin-type beta-trefoil lectin domain
111111219Inhibitor of Apoptosis domain
3222323320Voltage gated chloride channel
113437291150Caspase domain
67868610859GDSL-like Lipase/Acylhydrolase
1211112211Poly-adenylate binding protein, unique domain
111111219POLO box duplicated region
2421272419202324182ABC transporter transmembrane region
931323241Integrase core domain
7588485348FAD binding domain
613717Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1231111111HAMP domain
2122212214ribosomal L5P family C-terminus
64552366560Insulinase (Peptidase family M16)
4565444436Dehydrogenase E1 component
111111118Lumazine binding domain
66676710755Elongation factor G C-terminus
4575444437HMGL-like
4344354431DnaJ central domain
4111223115Starch binding domain
2222222216Ribosomal protein L1p/L10e family
6455645439Cation transporting ATPase, C-terminus
7666745546Cation transporter/ATPase, N-terminus
12311671177dUTPase
4555744438Aconitase C-terminal domain
3333333324Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
6232511424Acyl transferase domain
111111129Urease beta subunit
2433341222Dihydrodipicolinate synthetase family
2727262726252430212haloacid dehalogenase-like hydrolase
2143111316Glycosyl hydrolases family 2
13444121041465Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
1113Acylphosphatase
11111117Adenylosuccinate synthetase
1221111110Asparaginase, N-terminal
11Beta defensin
3334324224Peptidase S24-like
1221112111Inorganic pyrophosphatase
5122535528Glycosyl hydrolases family 16
5222125322Glycosyl hydrolases family 15
95768542064NADH:flavin oxidoreductase / NADH oxidase family
32311131153-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2333631425Glycosyl hydrolase family 20, catalytic domain
4355445535HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
2715101032311024159GMC oxidoreductase
3222213217Asparagine synthase
29111628644134Fungal cellulose binding domain
5544655741Septin
111111118EF-1 guanine nucleotide exchange domain
111111219Homoserine dehydrogenase
105452228Flavin-binding monooxygenase-like
4333323324tRNA synthetases class I (E and Q), catalytic domain
2121111110tRNA synthetases class I (R)
6676665749XPG N-terminal domain
715171512751290Metallo-beta-lactamase superfamily
11114F5/8 type C domain
6544455538Choline/Carnitine o-acyltransferase
111111118Putative esterase
3