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PFAM Domains • Tuber magnatum v1.0
Annotations/GenomesAscim1Chove1Morco1Pyrco1Terbo1Tubma1Tubme1Wilmi1TotalAnnotation Description
PFAMs
7,1787,7817,2227,0496,2516,4895,8997,42155,290
11137 transmembrane receptor (rhodopsin family)
4759384141514555377ATPase family associated with various cellular activities (AAA)
3132333429333529256ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
1415151514151614118Elongation factor Tu GTP binding domain
98989108970Helix-loop-helix DNA-binding domain
5665333435Hsp20/alpha crystallin family
71078789965Hsp70 protein
7221110911111192KH domain
111111118SH2 domain
2320202222182023168SH3 domain
91010101113111084Actin
124491270210116156173071,691Ankyrin repeat
123PAN domain
7887777758ADP-ribosylation factor family
5332433326Eukaryotic aspartyl protease
4444444432Cyclic nucleotide-binding domain
22Cytochrome b/b6/petB
111111118Cytochrome c
1333123521Double-stranded RNA binding motif
1724161816181717143EF hand
11121121104Fe-4S binding domain
2222322217Fibronectin type III domain
612976781065Glutathione S-transferase, C-terminal domain
1122122213Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
4544544535Homeodomain
2222222216lactate/malate dehydrogenase, NAD binding domain
5655646441Myosin head (motor domain)
5741354516272650297Cytochrome P450
94122156989910093140902Protein kinase domain
9101313810101285Pyridine nucleotide-disulphide oxidoreductase
2327262626262535214Ras family
1214151610141216109Response regulator receiver domain
37121074741RNase H
6366656564666269520RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
123Reverse transcriptase (RNA-dependent DNA polymerase)
1113Serpin (serine protease inhibitor)
2334332424Copper/zinc superoxide dismutase (SODC)
2223232319Iron/manganese superoxide dismutases, alpha-hairpin domain
32128109671296Subtilase family
2030413418231827211Sugar (and other) transporter
898129881072Thioredoxin
3222222217Trypsin
4554456437Tubulin/FtsZ family, GTPase domain
6632487642von Willebrand factor type A domain
69566956515341104499Zinc finger, C2H2 type
4040484840363653341Zinc finger, C3HC4 type (RING finger)
352891224899134Zinc knuckle
2222422218Protein-tyrosine phosphatase
3649535027464546352short chain dehydrogenase
2020202418171428161Zinc-binding dehydrogenase
4555544537Thiolase, N-terminal domain
4433554735Beta-ketoacyl synthase, N-terminal domain
49544634392Fe-2S iron-sulfur cluster binding domain
111111118Enolase, C-terminal TIM barrel domain
1146Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
77810877862Glutamine amidotransferase class-I
101110101013121086TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
4333333325Glutamine synthetase, catalytic domain
112111119Triosephosphate isomerase
1315131412161518116E1-E2 ATPase
8118810991174Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
3764357540Alpha amylase, catalytic domain
2223112215Phorbol esters/diacylglycerol binding domain (C1 domain)
11Metallothionein
6779778758Bacterial transferase hexapeptide (six repeats)
4444444432tRNA synthetases class I (I, L, M and V)
7777777756Cyclin, N-terminal domain
799133331057Carboxylesterase family
3444444431DNA polymerase family B
3333434326ATP synthase subunit C
1112211211Peroxidase
3113111213Beta-lactamase
4334333326C-5 cytosine-specific DNA methylase
11114NADH dehydrogenase
2225222324212121179Calcineurin-like phosphoesterase
88137633351Cellulase (glycosyl hydrolase family 5)
6666866650tRNA synthetases class II (D, K and N)
3536354036353434285Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
1211141512111016101Aminotransferase class I and II
8889887965Phosphoribosyl transferase domain
111212111211101190Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111121119Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
111111118Chaperonin 10 Kd subunit
101211121111121392C2 domain
1921191822221819158PH domain
5978989661bZIP transcription factor
9131213912101290Aldehyde dehydrogenase family
6170757745545676514Fungal Zn(2)-Cys(6) binuclear cluster domain
1819202218191919154Cytochrome b5-like Heme/Steroid binding domain
2333222219Oxidoreductase molybdopterin binding domain
991199991176Oxidoreductase NAD-binding domain
2918252621191939196SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2023232122222125177Ubiquitin-conjugating enzyme
5555655541Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
11765443343Chitin recognition protein
3238142528Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
123211111Cupin
3332322422Annexin
1432343323Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
33343333252-oxoacid dehydrogenases acyltransferase (catalytic domain)
4343333326Catalase
7111111114Disintegrin
22UDP-glucoronosyl and UDP-glucosyl transferase
5455633637Aminotransferase class-III
2222222216Ribosomal protein S19
111111118DNA gyrase B
4444544433Thiamine pyrophosphate enzyme, central domain
3333334325Lyase
2232222217Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111118Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
112Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
10101010910101079Kinesin motor domain
3127282728252626218DnaJ domain
1414151414161414115Proteasome subunit
3322122318Major intrinsic protein
111111118ATP synthase
1231122113Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
2321222216Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
2214151011101216110Ubiquitin family
3433344327Cofilin/tropomyosin-type actin-binding protein
333233332314-3-3 protein
5344333429Alkaline phosphatase
21121119Zinc carboxypeptidase
18192322910818127Aldo/keto reductase family
1420181914191618138Myb-like DNA-binding domain
4444444432Forkhead domain
111111118Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
3212222216Ribosomal protein S14p/S29e
4433444329FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
2232222217
4454544535Flavodoxin
111111118Calreticulin family
26811139841594Common central domain of tyrosinase
72586455565Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
4942484645383545348DEAD/DEAH box helicase
90718082806665100634Helicase conserved C-terminal domain
1711111114EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
211211210Ribosomal protein L5
4669444643Pyridoxal-dependent decarboxylase conserved domain
3333333324Citrate synthase, C-terminal domain
5555575542GHMP kinases N terminal domain
4556542536Biotin carboxylase, N-terminal domain
111111219Tryptophan synthase alpha chain
999108891173Pyridoxal-phosphate dependent enzyme
131313131213111199NUDIX domain
5345343532pfkB family carbohydrate kinase
441122115Glycosyl hydrolases family 28
2222222216Ribosomal protein L3
2222222216Ribosomal protein L11, RNA binding domain
11121191112121088Histidine phosphatase superfamily (branch 1)
1111114111Thymidylate synthase
21317Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
5465566643Calponin homology (CH) domain
5554454537Glutamine amidotransferases class-II
3222222217Ribosomal protein S15
112Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
2322222217SRF-type transcription factor (DNA-binding and dimerisation domain)
7797688759GATA zinc finger
1318172011151626136Amino acid permease
3442376433Prolyl oligopeptidase family
1222222114Ribosomal protein L30p/L7e
4466354537Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4444444432Aconitase family (aconitate hydratase)
6333111119Glycosyl hydrolase family 10
6454443434Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
33Galactoside-binding lectin
2224122217Ribosomal protein S10p/S20e
3333433325Arrestin (or S-antigen), N-terminal domain
11Interleukin-1 / 18
111121119Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2212222215Ribosomal protein L6
3333333526Polyprenyl synthetase
3234332323Hexokinase
46645441043Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
3544344431Rieske [2Fe-2S] domain
11439Proton-conducting membrane transporter
7778774754Biotin-requiring enzyme
111111118Phosphofructokinase
2221211112Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
3333323323FGGY family of carbohydrate kinases, N-terminal domain
11Prion/Doppel alpha-helical domain
7767756752Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
5344222325Transcription factor TFIIB repeat
6565455642Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
124775431456Chromo (CHRromatin Organisation MOdifier) domain
2222211214Phosphatidylinositol-specific phospholipase C, Y domain
3342233323Phosphatidylinositol-specific phospholipase C, X domain
4666566443D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2122122214Malic enzyme, N-terminal domain
22221112136-phosphogluconate dehydrogenase, C-terminal domain
7644355741Multicopper oxidase
112Granulin
10711116761371WW domain
1212111211Ribosomal RNA adenine dimethylase
24311314Yeast PIR protein repeat
107107104108121101100108856WD domain, G-beta repeat
4543455434Heavy-metal-associated domain
4334434429Adenylate kinase
3331233119Phosphoglucomutase/phosphomannomutase, C-terminal domain
2223222217Ribosomal protein S8
2111221212Ribosomal protein S11
4444344633LIM domain
11Matrixin
13331132127Regulator of chromosome condensation (RCC1) repeat
2222221215Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222322217chorismate binding enzyme
633433332860s Acidic ribosomal protein
4444644434Prenyltransferase and squalene oxidase repeat
4647656543Protein kinase C terminal domain
1111116Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
6666776650Bromodomain
59886811964Acyl-CoA dehydrogenase, C-terminal domain
1516161516161415123Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
111126Ribonuclease T2 family
3333333324HSF-type DNA-binding
2223221216SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
4653343634Serine carboxypeptidase
81088988867Phosphatidylinositol 3- and 4-kinase
112111119Transketolase, thiamine diphosphate binding domain
22Glycosyl hydrolases family 11
2224222319Inositol monophosphatase family
4445444433Glutaredoxin
2222322318Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
1121111210Iron-containing alcohol dehydrogenase
1123211213Ribosomal protein L10
3445333530KOW motif
11111117Ribosomal protein L34
2332332220RF-1 domain
1222222215Sodium:solute symporter family
111121119Imidazoleglycerol-phosphate dehydratase
112111119DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
5655564541Protein phosphatase 2C
4344444330Nucleotidyl transferase
213332115Carbonic anhydrase
112112210Phosphoribulokinase / Uridine kinase family
4545554436Fatty acid desaturase
6666666850MutS domain V
111111118Delta-aminolevulinic acid dehydratase
1344333223Arginase family
6766766650MCM P-loop domain
1112111210Squalene/phytoene synthase
81010117109772FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
1620242615202120162AMP-binding enzyme
5333333326G-protein alpha subunit
56681098860HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
71012127991177His Kinase A (phospho-acceptor) domain
2333333323Armadillo/beta-catenin-like repeat
2039253035363851274Tetratricopeptide repeat
3322231218Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
91310111212101087BRCA1 C Terminus (BRCT) domain
5655675544Glycosyl transferases group 1
2233222319Glycosyl transferase family 2
1212212112SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
1410212323Pectate lyase
112116ribonuclease
111111118Urease, gamma subunit
3544333429CoA-ligase
5878577653Phosphopantetheine attachment site
1232322217Formyl transferase
6877777756Metallopeptidase family M24
1310151411141016103Leucine Rich Repeat
2021172014161921148alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
4444444432PB1 domain
2222222216Staphylococcal nuclease homologue
101011101111111084Rab-GTPase-TBC domain
111111118Tudor domain
11111117WH1 domain
5745565542Zinc finger, ZZ type
2121111211HRDC domain
10109101010101079CBS domain
2222222216Ribosomal protein L13
2222222115Ribosomal protein L4/L1 family
111111118Clp protease
4344455332S1 RNA binding domain
111121119HIUase/Transthyretin family
3443444531AhpC/TSA family
4454443432tRNA synthetases class I (W and Y)
12111129UvrD/REP helicase N-terminal domain
4654455639Rhodanese-like domain
2222221215Universal stress protein family
2121242017181322156Acetyltransferase (GNAT) family
211111119SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
8888889865tRNA synthetase class II core domain (G, H, P, S and T)
2122211213SpoU rRNA Methylase family
11Phage integrase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
11111117PDZ domain
2334223322Class II Aldolase and Adducin N-terminal domain
4444444432Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5555555540Fes/CIP4, and EFC/F-BAR homology domain
3555444636IQ calmodulin-binding motif
2422322219Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4555444536Phospholipase D Active site motif
111111118Regulator of G protein signaling domain
4444444432GTPase-activator protein for Ras-like GTPase
4445544535RasGEF domain
5555455539RasGEF N-terminal motif
10111111912101084RhoGAP domain
5666666647RhoGEF domain
55562351041SPRY domain
3433344327RNA polymerase Rpb1, domain 2
3211122113Guanylate kinase
3443433327Gelsolin repeat
97910678864UBA/TS-N domain
1916191315131318126PHD-finger
11Filamin/ABP280 repeat
112111119GGL domain
6666666648HECT-domain (ubiquitin-transferase)
2211122112Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
4566445943Ribonuclease III domain
1212121212Region in Clathrin and VPS
3233333323RanBP1 domain
2223222318PPIC-type PPIASE domain
1322233319Zn-finger in Ran binding protein and others
1318162015151219128Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1142322318Poly(ADP-ribose) polymerase catalytic domain
1111116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
37094846540593981832F-box domain
111111118Elongation factor 1 gamma, conserved domain
2222121214Calpain family cysteine protease
1221122213Copper fist DNA binding domain
4545555538CRAL/TRIO domain
5681116611817133BTB/POZ domain
3328Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3343333325Voltage gated chloride channel
1127311622Caspase domain
156108231449GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
1113NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1413161414151412112ABC transporter transmembrane region
123Integrase core domain
5465544538FAD binding domain
2212122214Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2223221216ribosomal L5P family C-terminus
4646555641Insulinase (Peptidase family M16)
3333333324Dehydrogenase E1 component
111111118Lumazine binding domain
6666666648Elongation factor G C-terminus
4444643433HMGL-like
4434544432DnaJ central domain
2222222216Ribosomal protein L1p/L10e family
78787781062Cation transporting ATPase, C-terminus
89889881169Cation transporter/ATPase, N-terminus
1111116dUTPase
4444444432Aconitase C-terminal domain
3444343429Amino acid kinase family
112111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
4733543736Acyl transferase domain
111111118Urease beta subunit
2343332323Dihydrodipicolinate synthetase family
2826262722242331207haloacid dehalogenase-like hydrolase
1242111113Glycosyl hydrolases family 2
7635444437Glycosyl hydrolases family 18
1611111113Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
11112118Acylphosphatase
111121119Adenylosuccinate synthetase
1112111210Asparaginase, N-terminal
3323233322Peptidase S24-like
111111118Inorganic pyrophosphatase
7558654747Glycosyl hydrolases family 16
2122211213Glycosyl hydrolases family 15
2234111216NADH:flavin oxidoreductase / NADH oxidase family
12221112123-hydroxyacyl-CoA dehydrogenase, C-terminal domain
1221122112Glycosyl hydrolase family 20, catalytic domain
4334433327HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
2589155651689GMC oxidoreductase
2222222216Asparagine synthase
489187113289Fungal cellulose binding domain
5666666647Septin
211111119EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
1221118Flavin-binding monooxygenase-like
3333333324tRNA synthetases class I (E and Q), catalytic domain
111111118tRNA synthetases class I (R)
4443333428XPG N-terminal domain
6885677855Metallo-beta-lactamase superfamily
112111119F5/8 type C domain
2232222217Choline/Carnitine o-acyltransferase
111111118Putative esterase
111121119Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111131110Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
3433333325RNB domain
4266242531Dioxygenase
3223322320CNH domain
1112111210Diacylglycerol kinase catalytic domain
99109698868Dual specificity phosphatase, catalytic domain
2223222318P21-Rho-binding domain
111211141312121398PX domain
233