PFAM Domains • Trichoderma longibrachiatum ATCC 18648 v3.0
Annotations/GenomesFusgr1Trias1Triat2Trici4Triha1Trilo1Trilo3Trire2TrireRUTC30_1TriviGv29_8_2TotalAnnotation Description
PFAMs
9,4739,1179,1407,92910,1857,4547,5216,5077,8429,84485,012
1127 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
48465146524444444649470ATPase family associated with various cellular activities (AAA)
62564748614747464762523ABC transporter
444343344437ATP synthase alpha/beta family, nucleotide-binding domain
14141314151414141414140Elongation factor Tu GTP binding domain
161210811999910103Helix-loop-helix DNA-binding domain
355343333537Hsp20/alpha crystallin family
888898878880Hsp70 protein
9991089988988KH domain
111111111110SH2 domain
22222122222222242222221SH3 domain
101010910910710994Actin
9811713582154688063821711,050Ankyrin repeat
2042242222444PAN domain
777777777770ADP-ribosylation factor family
16202019221616161721183Eukaryotic aspartyl protease
544444444441Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
111111111110Cytochrome c
211111121112Double-stranded RNA binding motif
16181816171616201618171EF hand
2111121111124Fe-4S binding domain
243222212222Fibronectin type III domain
222321222220Globin
17182313311313101427179Glutathione S-transferase, C-terminal domain
111121111212Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
12131071088581192Homeodomain
333232222325lactate/malate dehydrogenase, NAD binding domain
11Low-density lipoprotein receptor repeat class B
11Lipocalin / cytosolic fatty-acid binding protein family
545444444543Myosin head (motor domain)
10772667311666666968118821Cytochrome P450
1041051121071111001011061081261,080Protein kinase domain
17222215251515141525185Pyridine nucleotide-disulphide oxidoreductase
27242423242222232425238Ras family
18151513141313131314141Response regulator receiver domain
123233323527RNase H
59596055585556595857576RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
222122222219Copper/zinc superoxide dismutase (SODC)
222232223323Iron/manganese superoxide dismutases, alpha-hairpin domain
26273618341415151529229Subtilase family
106787460905554765986738Sugar (and other) transporter
16121211131111111014121Thioredoxin
422232212222Trypsin
555555566552Tubulin/FtsZ family, GTPase domain
645444424441von Willebrand factor type A domain
63646253735355674863601Zinc finger, C2H2 type
37393839393839323738376Zinc finger, C3HC4 type (RING finger)
8595105352961Zinc knuckle
233232222223Protein-tyrosine phosphatase
1361601701241991181161181201811,442short chain dehydrogenase
697988591064949535192695Zinc-binding dehydrogenase
565555565552Thiolase, N-terminal domain
18202218321616171626201Beta-ketoacyl synthase, N-terminal domain
9555455555532Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
122111111213Enolase, C-terminal TIM barrel domain
1124Cytochrome C and Quinol oxidase polypeptide I
98891188791087Glutamine amidotransferase class-I
10101010101110101010101TCP-1/cpn60 chaperonin family
422262222428Glutamine synthetase, catalytic domain
122222222219Triosephosphate isomerase
23171616181818161719178E1-E2 ATPase
887898778979Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
754464444547Alpha amylase, catalytic domain
312112221217Phorbol esters/diacylglycerol binding domain (C1 domain)
10101281066881290Bacterial transferase hexapeptide (six repeats)
344343363437tRNA synthetases class I (I, L, M and V)
688787777974Cyclin, N-terminal domain
28201914331414121328195Carboxylesterase family
444444444440DNA polymerase family B
646344444443ATP synthase subunit C
666685566761Peroxidase
171619719888918129Beta-lactamase
222222212219C-5 cytosine-specific DNA methylase
30293025272828272632282Calcineurin-like phosphoesterase
1211107966451080Cellulase (glycosyl hydrolase family 5)
787997787877tRNA synthetases class II (D, K and N)
42383834403535353638371Mitochondrial carrier protein
21212018281818161829207Aminotransferase class I and II
8810888888882Phosphoribosyl transferase domain
101010910101010101099Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
222221122218Ribosomal protein S4/S9 N-terminal domain
222222222321Ribosomal protein S12/S23
144131111219Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
15141213141415141313137C2 domain
18191720191616191917180PH domain
12121211131112111414122bZIP transcription factor
31262523391919202031253Aldehyde dehydrogenase family
2493252762144052042131922113102,599Fungal Zn(2)-Cys(6) binuclear cluster domain
25242421271819212125225Cytochrome b5-like Heme/Steroid binding domain
343444444438Oxidoreductase molybdopterin binding domain
25201818211416141823187Oxidoreductase NAD-binding domain
26262724282625252427258SNF2 family N-terminal domain
222222222220Ribosomal protein S7p/S5e
19192019202121202020199Ubiquitin-conjugating enzyme
877797777874Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
111111111110Hsp90 protein
222221122218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
565151122533Chitin recognition protein
533333333332Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
545344433439Cupin
233232223224Annexin
311111111112Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
4343333334332-oxoacid dehydrogenases acyltransferase (catalytic domain)
677777777769Catalase
2112111110Disintegrin
1122112212UDP-glucoronosyl and UDP-glucosyl transferase
1610891188881096Aminotransferase class-III
222222222220Ribosomal protein S19
111111111110DNA gyrase B
798485545964Thiamine pyrophosphate enzyme, central domain
343454333335Lyase
222222222220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
33Sodium:neurotransmitter symporter family
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
111111111110Indole-3-glycerol phosphate synthase
11114Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
119109101110111110102Kinesin motor domain
26252626262626262625258DnaJ domain
14141414141314141414139Proteasome subunit
567787777869Major intrinsic protein
111111111110ATP synthase
324242222225Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
111111111110Profilin
111111111110Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
1211121012131381112114Ubiquitin family
555554435546Cofilin/tropomyosin-type actin-binding protein
22222222232114-3-3 protein
422332233327Alkaline phosphatase
844444444444Zinc carboxypeptidase
31363629462828272645332Aldo/keto reductase family
12141314151313141415137Myb-like DNA-binding domain
444444444440Forkhead domain
52119Glycosyl hydrolases family 32 N-terminal domain
111111111110Ribosomal protein L16p/L10e
222222212219Ribosomal protein S14p/S29e
333334434333FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
222222222220
887787777874Flavodoxin
111111111110Calreticulin family
1443434323444Common central domain of tyrosinase
11988107738879Aminotransferase class-V
111111111110Ribonucleotide reductase, small chain
38383738383636493836384DEAD/DEAH box helicase
72727473797475757273739Helicase conserved C-terminal domain
111111111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222220Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222121122217Ribosomal protein L5
1198574466767Pyridoxal-dependent decarboxylase conserved domain
332222222222Citrate synthase, C-terminal domain
555553355546GHMP kinases N terminal domain
656473355751Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
15141312151212121215132Pyridoxal-phosphate dependent enzyme
17181815211515151622172NUDIX domain
844646646553pfkB family carbohydrate kinase
656543443646Glycosyl hydrolases family 28
222222222220Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
12111111149961112106Histidine phosphatase superfamily (branch 1)
111111111110Thymidylate synthase
11114Lipoxygenase
344343344436ATP synthase alpha/beta chain, C terminal domain
555554455548Calponin homology (CH) domain
545565545650Glutamine amidotransferases class-II
222222222220Ribosomal protein S15
11'Cold-shock' DNA-binding domain
1111111119Thaumatin family
222222222220Fructose-1-6-bisphosphatase, N-terminal domain
111111111110Ribonucleotide reductase, all-alpha domain
222222222220Ribosomal protein S2
232222222221SRF-type transcription factor (DNA-binding and dimerisation domain)
788887868876GATA zinc finger
53363535393232333336364Amino acid permease
633474414541Prolyl oligopeptidase family
222222222220Ribosomal protein L30p/L7e
1188687747874Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
566574444651Aconitase family (aconitate hydratase)
521121111217Glycosyl hydrolase family 10
533322212326Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
111111111110Nucleoside diphosphate kinase
111111111110Ribosomal protein S10p/S20e
332323333227Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
111111111110SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222322222221Ribosomal protein L6
543443333335Polyprenyl synthetase
644354444543Hexokinase
7101091188991192Dynamin family
121111111111Transcription factor TFIID (or TATA-binding protein, TBP)
544444444441Rieske [2Fe-2S] domain
11Phytochrome region
22Proton-conducting membrane transporter
9787966671075Biotin-requiring enzyme
111111111110Phosphofructokinase
222222222220Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
433333333331FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
17151515221414121318155Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
222222222220Transcription factor TFIIB repeat
867575566661Cytidine and deoxycytidylate deaminase zinc-binding region
111112211112Molybdopterin oxidoreductase
767777616963Chromo (CHRromatin Organisation MOdifier) domain
644244444440Phosphatidylinositol-specific phospholipase C, Y domain
755355565652Phosphatidylinositol-specific phospholipase C, X domain
12101081355561286D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222222220Malic enzyme, N-terminal domain
11114PEP-utilising enzyme, mobile domain
1221211111136-phosphogluconate dehydrogenase, C-terminal domain
141010987788990Multicopper oxidase
10111111107810101098WW domain
111111111110Ribosomal RNA adenine dimethylase
1111111119Yeast PIR protein repeat
1151281381181471141141231211481,266WD domain, G-beta repeat
655445555549Heavy-metal-associated domain
343454444338Adenylate kinase
222222222220Phosphoglucomutase/phosphomannomutase, C-terminal domain
211122222217Ribosomal protein S8
111111111110Ribosomal protein S11
443444344438LIM domain
11215111518Matrixin
222112211115Regulator of chromosome condensation (RCC1) repeat
222222222220Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222222222220chorismate binding enzyme
43333333333160s Acidic ribosomal protein
444444444440Prenyltransferase and squalene oxidase repeat
667667756864Protein kinase C terminal domain
111111111110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
777777777770Bromodomain
11101081155881086Acyl-CoA dehydrogenase, C-terminal domain
14141314141414151414140Ubiquitin carboxyl-terminal hydrolase
111111111110Ribosomal protein L36
334343333534Ribonuclease T2 family
333333333431HSF-type DNA-binding
222122222219SRP54-type protein, GTPase domain
2112111110Urease alpha-subunit, N-terminal domain
967584455760Serine carboxypeptidase
788788888878Phosphatidylinositol 3- and 4-kinase
222232222221Transketolase, thiamine diphosphate binding domain
344343333434Glycosyl hydrolases family 11
544454444543Inositol monophosphatase family
544444434440Glutaredoxin
354353323435Isocitrate lyase family
322222222221Serine hydroxymethyltransferase
322262222326Iron-containing alcohol dehydrogenase
222221122218Ribosomal protein L10
233332263330KOW motif
11Negative factor, (F-Protein) or Nef
332333323328RF-1 domain
254455555545Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
666775566761Protein phosphatase 2C
233332233327Nucleotidyl transferase
47941365441066Carbonic anhydrase
111111121111Phosphoribulokinase / Uridine kinase family
777765566662Fatty acid desaturase
566666666659MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
453353333436Arginase family
666566666659MCM P-loop domain
211111111111Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
8910910888111293FHA domain
62584943573232374064474AMP-binding enzyme
333333333330G-protein alpha subunit
9768788781078HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
151212101199101011109His Kinase A (phospho-acceptor) domain
233333332328Armadillo/beta-catenin-like repeat
27293521362222242340279Tetratricopeptide repeat
244434454438Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
13111111111111111111112BRCA1 C Terminus (BRCT) domain
666666666660Glycosyl transferases group 1
634444434339Glycosyl transferase family 2
211111131113SAM domain (Sterile alpha motif)
111111111110linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
9110Pectate lyase
232221112218ribonuclease
21121111111Urease, gamma subunit
655554455549CoA-ligase
27332923421414192143265Phosphopantetheine attachment site
533433333333Formyl transferase
9911101099891094Metallopeptidase family M24
14151416141414161413144Leucine Rich Repeat
53576940803838224077514alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
334444444438PB1 domain
222122222219Staphylococcal nuclease homologue
9101011109910101098Rab-GTPase-TBC domain
1111111119Tudor domain
111211119WH1 domain
444554455343Zinc finger, ZZ type
111111111110HRDC domain
1099899999990CBS domain
222222222220Ribosomal protein L13
222222222220Ribosomal protein L4/L1 family
111111111110Clp protease
555555555550S1 RNA binding domain
111111111110HIUase/Transthyretin family
354343333435AhpC/TSA family
544444444441tRNA synthetases class I (W and Y)
2114UvrD/REP helicase N-terminal domain
764796644861Rhodanese-like domain
222222222220Universal stress protein family
49555245614444404965504Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
89109999810990tRNA synthetase class II core domain (G, H, P, S and T)
111111111110SpoU rRNA Methylase family
222322222221Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
111111111110PDZ domain
344233333331Class II Aldolase and Adducin N-terminal domain
544344444440Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
453555535545Fes/CIP4, and EFC/F-BAR homology domain
656665555554IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
466556656554Phospholipase D Active site motif
211111111111Regulator of G protein signaling domain
444444444440GTPase-activator protein for Ras-like GTPase
444444444440RasGEF domain
444444424438RasGEF N-terminal motif
888888888880RhoGAP domain
656466656656RhoGEF domain
435343333334SPRY domain
343333333331RNA polymerase Rpb1, domain 2
422332233327Guanylate kinase
544444444441Gelsolin repeat
89107108778983UBA/TS-N domain
14191817201715151719171PHD-finger
111111111110GGL domain
666666666660HECT-domain (ubiquitin-transferase)
111112119Helix-hairpin-helix motif
111111111110MSP (Major sperm protein) domain
355454444543Ribonuclease III domain
333333323329Region in Clathrin and VPS
333333333330RanBP1 domain
122222222219PPIC-type PPIASE domain
332233322326Zn-finger in Ran binding protein and others
161816142015151515