PFAM Domains • Dentipellis sp. KUC8613 v1.0
Annotations/GenomesAurvu1Clapy1Densp1Hetan2Lopni1Ricme1Stehi1TotalAnnotation Description
PFAMs
8,4328,4878,0217,7119,9039,8479,00561,406
44464742474749322ATPase family associated with various cellular activities (AAA)
38423432575648307ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
17161416141415106Elongation factor Tu GTP binding domain
1112111211131383Helix-loop-helix DNA-binding domain
610961214562Hsp20/alpha crystallin family
10158101271072Hsp70 protein
988788856KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
27282526333629204SH3 domain
1311121112111282Actin
33323551567334314Ankyrin repeat
6777109753ADP-ribosylation factor family
44307328394036290Eukaryotic aspartyl protease
333333422Cyclic nucleotide-binding domain
211122110Cytochrome c
957613121163Double-stranded RNA binding motif
18191715181917123EF hand
111122194Fe-4S binding domain
11211118Fibronectin type III domain
11Globin
128121114131686Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
17108898969Homeodomain
1113Laminin EGF domain
224222216lactate/malate dehydrogenase, NAD binding domain
112Lipocalin / cytosolic fatty-acid binding protein family
655566740Myosin head (motor domain)
1672721521341831752041,287Cytochrome P450
2171951611321922041571,258Protein kinase domain
17221515212022132Pyridine nucleotide-disulphide oxidoreductase
26262322252425171Ras family
888711121468Response regulator receiver domain
301119911813101RNase H
69756367808065499RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
10111Reverse transcriptase (RNA-dependent DNA polymerase)
11111128Copper/zinc superoxide dismutase (SODC)
323322217Iron/manganese superoxide dismutases, alpha-hairpin domain
1636523237Subtilase family
26392932444139250Sugar (and other) transporter
914101012131179Thioredoxin
555666538Tubulin/FtsZ family, GTPase domain
455333528von Willebrand factor type A domain
76626489606155467Zinc finger, C2H2 type
64726058888256480Zinc finger, C3HC4 type (RING finger)
141414154262327272Zinc knuckle
222222214Protein-tyrosine phosphatase
11612013058161158136879short chain dehydrogenase
41376037818078414Zinc-binding dehydrogenase
455555534Thiolase, N-terminal domain
293465837Beta-ketoacyl synthase, N-terminal domain
3334333222Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
977777751Glutamine amidotransferase class-I
1010111010101071TCP-1/cpn60 chaperonin family
11ATP synthase A chain
333344424Glutamine synthetase, catalytic domain
12111118Triosephosphate isomerase
1214121415151193E1-E2 ATPase
19191916141516118Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
6897661355Alpha amylase, catalytic domain
665576641Phorbol esters/diacylglycerol binding domain (C1 domain)
333433423Bacterial transferase hexapeptide (six repeats)
333333321tRNA synthetases class I (I, L, M and V)
141291015151085Cyclin, N-terminal domain
25262619393732204Carboxylesterase family
444344427DNA polymerase family B
333333321ATP synthase subunit C
898121919782Peroxidase
2712891140Beta-lactamase
646466638C-5 cytosine-specific DNA methylase
32282823313328203Calcineurin-like phosphoesterase
1312111113131588Cellulase (glycosyl hydrolase family 5)
555555636tRNA synthetases class II (D, K and N)
36373636383837258Mitochondrial carrier protein
14131414131320101Aminotransferase class I and II
666777544Phosphoribosyl transferase domain
1313131313131391Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11111128Chaperonin 10 Kd subunit
15151819151417113C2 domain
21201722212020141PH domain
645554736bZIP transcription factor
21232014141422128Aldehyde dehydrogenase family
62706558999885537Fungal Zn(2)-Cys(6) binuclear cluster domain
27242223212025162Cytochrome b5-like Heme/Steroid binding domain
132222517Oxidoreductase molybdopterin binding domain
8871089858Oxidoreductase NAD-binding domain
25262721242227172SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
21212121212121147Ubiquitin-conjugating enzyme
5551055540Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222222214Hsp90 protein
222233216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
112Chitin recognition protein
11111139Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
4713121441Cupin
3433572272-oxoacid dehydrogenases acyltransferase (catalytic domain)
222333318Catalase
11111117Disintegrin
112217UDP-glucoronosyl and UDP-glucosyl transferase
557555638Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
222222214Thiamine pyrophosphate enzyme, central domain
333333321Lyase
11111128Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11211129Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
112134113Indole-3-glycerol phosphate synthase
221324317Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
10109999864Kinesin motor domain
30303333343134225DnaJ domain
15141414151514101Proteasome subunit
876399547Major intrinsic protein
11111117ATP synthase
432211316Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
12111118Profilin
11121129Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
14171619161715114Ubiquitin family
765555639Cofilin/tropomyosin-type actin-binding protein
32222421714-3-3 protein
221232214Alkaline phosphatase
11111128Zinc carboxypeptidase
49495642757464409Aldo/keto reductase family
1112131213131185Myb-like DNA-binding domain
65551313552Forkhead domain
11114Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
232222114Ribosomal protein S14p/S29e
344377432FKBP-type peptidyl-prolyl cis-trans isomerase
222222214
57561010548Flavodoxin
11Protamine P1
11Tropomyosin
11112118Calreticulin family
253378735Common central domain of tyrosinase
667766846Aminotransferase class-V
423237526Ribonucleotide reductase, small chain
65544943645154380DEAD/DEAH box helicase
103938977989091641Helicase conserved C-terminal domain
111115Fructose-bisphosphate aldolase class-I
11111128EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
232122214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
545533530Pyridoxal-dependent decarboxylase conserved domain
333333321Citrate synthase, C-terminal domain
566555537GHMP kinases N terminal domain
666667643Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
9878991060Pyridoxal-phosphate dependent enzyme
14161717161516111NUDIX domain
645455534pfkB family carbohydrate kinase
326813131762Glycosyl hydrolases family 28
222222214Ribosomal protein L3
212222213Ribosomal protein L11, RNA binding domain
97108771058Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
554444430Calponin homology (CH) domain
555555636Glutamine amidotransferases class-II
222267223Ribosomal protein S15
32941313953Thaumatin family
141111110Fructose-1-6-bisphosphatase, N-terminal domain
11111229Ribonucleotide reductase, all-alpha domain
232222114Ribosomal protein S2
222222315SRF-type transcription factor (DNA-binding and dimerisation domain)
10109915161281GATA zinc finger
23332419252530179Amino acid permease
109551210960Prolyl oligopeptidase family
11112219Ribosomal protein L30p/L7e
1014101012121482Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
464366433Aconitase family (aconitate hydratase)
632256630Glycosyl hydrolase family 10
11112219Glycosyl hydrolases family 17
222211212Ribosomal protein S5, N-terminal domain
222222214Nucleoside diphosphate kinase
22221110Tetraspanin family
11Galactoside-binding lectin
131122212Ribosomal protein S10p/S20e
424355427Arrestin (or S-antigen), N-terminal domain
1111211118Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11112219SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
535544834Polyprenyl synthetase
222222214Hexokinase
1079777754Dynamin family
11111128Transcription factor TFIID (or TATA-binding protein, TBP)
333444526Rieske [2Fe-2S] domain
7878810755Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11112118Hydroxymethylglutaryl-coenzyme A reductase
433444325FGGY family of carbohydrate kinases, N-terminal domain
778888854Enoyl-CoA hydratase/isomerase
322222215Ribosomal protein S9/S16
222344219Transcription factor TFIIB repeat
677799752Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
16612211214990Chromo (CHRromatin Organisation MOdifier) domain
222222214Phosphatidylinositol-specific phospholipase C, Y domain
222222214Phosphatidylinositol-specific phospholipase C, X domain
13811666959D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333333321Malic enzyme, N-terminal domain
111111286-phosphogluconate dehydrogenase, C-terminal domain
1217620222321121Multicopper oxidase
1098814161176WW domain
222222214Ribosomal RNA adenine dimethylase
1531391331261581701511,030WD domain, G-beta repeat
444444428Heavy-metal-associated domain
333633324Adenylate kinase
21111118Phosphoglucomutase/phosphomannomutase, C-terminal domain
212211110Ribosomal protein S8
122123112Ribosomal protein S11
666577643LIM domain
156Matrixin
343234423Regulator of chromosome condensation (RCC1) repeat
222222113Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
232222215chorismate binding enzyme
43335532660s Acidic ribosomal protein
444444428Prenyltransferase and squalene oxidase repeat
777688851Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
1010101712111080Bromodomain
989877957Acyl-CoA dehydrogenase, C-terminal domain
1314141313131494Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
222233317Ribonuclease T2 family
544455431HSF-type DNA-binding
232222215SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
18142010262414126Serine carboxypeptidase
988889858Phosphatidylinositol 3- and 4-kinase
222222315Transketolase, thiamine diphosphate binding domain
42118Glycosyl hydrolases family 11
112WHEP-TRS domain
222222214Inositol monophosphatase family
545475434Glutaredoxin
453344427Isocitrate lyase family
11111117Serine hydroxymethyltransferase
224233521Iron-containing alcohol dehydrogenase
322222215Ribosomal protein L10
444544530KOW motif
11111218Ribosomal protein L34
233333320RF-1 domain
233333421Sodium:solute symporter family
11112219Imidazoleglycerol-phosphate dehydratase
21111118DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
89101011101068Protein phosphatase 2C
343332422Nucleotidyl transferase
335588436Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
1312911981577Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
343367531Arginase family
666676643MCM P-loop domain
111122210Squalene/phytoene synthase
9141410514610154FHA domain
31263732343241233AMP-binding enzyme
1715121214121597G-protein alpha subunit
19162019212122138HMG (high mobility group) box
5553881044His Kinase A (phospho-acceptor) domain
344444326Armadillo/beta-catenin-like repeat
46483535526133310Tetratricopeptide repeat
443233322Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
91189991065BRCA1 C Terminus (BRCT) domain
666666642Glycosyl transferases group 1
644455432Glycosyl transferase family 2
211116SAM domain (Sterile alpha motif)
544223424linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
255416Pectate lyase
112228ribonuclease
11111117Urease, gamma subunit
333333321CoA-ligase
579776950Phosphopantetheine attachment site
222222214Formyl transferase
1110101011111376Metallopeptidase family M24
15141415131317101Leucine Rich Repeat
29343831514950282alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
545555433PB1 domain
222222214Staphylococcal nuclease homologue
99101011101069Rab-GTPase-TBC domain
11211118Tudor domain
122243216WH1 domain
443544327Zinc finger, ZZ type
11111117HRDC domain
999999862CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
435444428S1 RNA binding domain
1111116HIUase/Transthyretin family
344444528AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
12121119UvrD/REP helicase N-terminal domain
445455532Rhodanese-like domain
222222214Universal stress protein family
34404226454739273Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222315AIR synthase related protein, N-terminal domain
866666644tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
111311412Class II Aldolase and Adducin N-terminal domain
333322218Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
455533530Fes/CIP4, and EFC/F-BAR homology domain
445586436IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
433344324Phospholipase D Active site motif
11113119Regulator of G protein signaling domain
444444529GTPase-activator protein for Ras-like GTPase
8867910856RasGEF domain
987888957RasGEF N-terminal motif
1513131214131494RhoGAP domain
1413131313131291RhoGEF domain
444444428SPRY domain
333443323RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
544455532Gelsolin repeat
98971010861UBA/TS-N domain
14151615191919117PHD-finger
12111129GGL domain
575555537HECT-domain (ubiquitin-transferase)
312112111Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
97781011759Ribonuclease III domain
222233216Region in Clathrin and VPS
333233219RanBP1 domain
222233317PPIC-type PPIASE domain
323332420Zn-finger in Ran binding protein and others
27281920232725169Zinc finger C-x8-C-x5-C-x3-H type (and similar)
131117B-box zinc finger
343241127Poly(ADP-ribose) polymerase catalytic domain
223222114Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
279254151633253241351,531F-box domain
11111117Elongation factor 1 gamma, conserved domain
111211613Calpain family cysteine protease
222222214Copper fist DNA binding domain
778677648CRAL/TRIO domain
51345020484843294BTB/POZ domain
11198424Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
11121211445539184Caspase domain
769917171075GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
21111118POLO box duplicated region
17231211333328157ABC transporter transmembrane region
473353Integrase core domain
333443424FAD binding domain
112152214Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
331111313HAMP domain
222222113ribosomal L5P family C-terminus
555566537Insulinase (Peptidase family M16)
444444428Dehydrogenase E1 component
11111117Lumazine binding domain
876666746Elongation factor G C-terminus
444566534HMGL-like
444444428DnaJ central domain
364322525Starch binding domain
222222113Ribosomal protein L1p/L10e family
555668439Cation transporting ATPase, C-terminus
787789652Cation transporter/ATPase, N-terminus
11111117dUTPase
454355430Aconitase C-terminal domain
333333321Amino acid kinase family
11211118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
292355632Acyl transferase domain
11111117Urease beta subunit
222333217Dihydrodipicolinate synthetase family
27333028323330213haloacid dehalogenase-like hydrolase
222211212Glycosyl hydrolases family 2
12717916141388Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
323333320Peptidase S24-like
11111117Inorganic pyrophosphatase
444533629Glycosyl hydrolases family 16
10144533342Glycosyl hydrolases family 15
20243112393923188NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
224455426Glycosyl hydrolase family 20, catalytic domain
666666642HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
48473534373552288GMC oxidoreductase
322222316Asparagine synthase
23232217212417147Fungal cellulose binding domain
666666642Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
433644529Flavin-binding monooxygenase-like
343333423tRNA synthetases class I (E and Q), catalytic domain
11211118tRNA synthetases class I (R)
465677742XPG N-terminal domain
11912911101375Metallo-beta-lactamase superfamily
12317F5/8 type C domain
545644533Choline/Carnitine o-acyltransferase
11111117Putative esterase
11Furin-like cysteine rich region
11111117Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
1124331024Dioxygenase
345444428CNH domain
322222114Diacylglycerol kinase catalytic domain
15191513141410100Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
322345221P21-Rho-binding domain
1112111112121584PX domain
323256324Ras association (RalGDS/AF-6) domain
444433426UBX domain
555554534VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
447844637Carbon-nitrogen hydrolase
11125N-acetyltransferase
11111117Prephenate dehydratase
455555635Syntaxin
565576640Pumilio-family RNA binding repeat
776766645Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111139ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
333334423impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
523133320Glycosyl hydrolase family 7
222222214RNA pseudouridylate synthase
877777750Histone deacetylase domain
111155216POT family
122122212PWWP domain
25231517313020161SET domain
234477532Isochorismatase family
222433218Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
677566845XPG I-region
2111117Acetokinase family
222111312DNA photolyase
11111117Cation-independent mannose-6-phosphate receptor repeat
11111117Cytosol aminopeptidase family, catalytic domain
11233212Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
233333320Acyl CoA binding protein
554544532Cullin family
11111117Elongation factor TS
555885945FAD binding domain
17243110101321126O-methyltransferase domain
444255529EamA-like transporter family
222223215
777888853ThiF family
11111117Ribosomal family S4e
21111129Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
222222214Ammonium Transporter Family
333344323Sulfate permease family
11112219MATH domain
2