PFAM Domains • Sarcoscypha coccinea ATCC 58028 v1.0
Annotations/GenomesAscim1Chove1Morco1Pyrco1Sarco1Terbo1Tubme1Wilmi1TotalAnnotation Description
PFAMs
7,1787,7817,2227,0498,0236,2515,8997,42156,824
12147 transmembrane receptor (rhodopsin family)
4759384144414555370ATPase family associated with various cellular activities (AAA)
3132333434293529257ABC transporter
4444544433ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
1415151515141614118Elongation factor Tu GTP binding domain
9898998969Helix-loop-helix DNA-binding domain
5665433436Hsp20/alpha crystallin family
71078979966Hsp70 protein
722111089111189KH domain
111111118SH2 domain
2320202221222023171SH3 domain
91010101111111082Actin
124491270210230116173071,765Ankyrin repeat
123PAN domain
7887977760ADP-ribosylation factor family
5332843331Eukaryotic aspartyl protease
4444444432Cyclic nucleotide-binding domain
22Cytochrome b/b6/petB
111111118Cytochrome c
1333313522Double-stranded RNA binding motif
1724161816161717141EF hand
11121121104Fe-4S binding domain
2222332218Fibronectin type III domain
6129719681077Glutathione S-transferase, C-terminal domain
1122112212Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
4544354534Homeodomain
2222222216lactate/malate dehydrogenase, NAD binding domain
5655466441Myosin head (motor domain)
5741354591162650361Cytochrome P450
94122156981459993140947Protein kinase domain
9101313148101289Pyridine nucleotide-disulphide oxidoreductase
2327262626262535214Ras family
1214151617101216112Response regulator receiver domain
37124104738RNase H
6366656574646269528RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
123Reverse transcriptase (RNA-dependent DNA polymerase)
112Serpin (serine protease inhibitor)
2334432425Copper/zinc superoxide dismutase (SODC)
2223222318Iron/manganese superoxide dismutases, alpha-hairpin domain
3212810109712100Subtilase family
2030413440181827228Sugar (and other) transporter
8981211981075Thioredoxin
3222222217Trypsin
4554446436Tubulin/FtsZ family, GTPase domain
6632547639von Willebrand factor type A domain
69566956735141104519Zinc finger, C2H2 type
4040484874403653379Zinc finger, C3HC4 type (RING finger)
3528912252499151Zinc knuckle
2222242218Protein-tyrosine phosphatase
3649535098274546404short chain dehydrogenase
2020202443181428187Zinc-binding dehydrogenase
4555554538Thiolase, N-terminal domain
44332154751Beta-ketoacyl synthase, N-terminal domain
49545434382Fe-2S iron-sulfur cluster binding domain
111111118Enolase, C-terminal TIM barrel domain
1146Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
77810987864Glutamine amidotransferase class-I
10111010910121082TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
4333633328Glutamine synthetase, catalytic domain
112111119Triosephosphate isomerase
1315131412121518112E1-E2 ATPase
8118881091173Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
3764437539Alpha amylase, catalytic domain
2223212216Phorbol esters/diacylglycerol binding domain (C1 domain)
11Metallothionein
67791278763Bacterial transferase hexapeptide (six repeats)
4444444432tRNA synthetases class I (I, L, M and V)
7777777756Cyclin, N-terminal domain
7991322331076Carboxylesterase family
3444344430DNA polymerase family B
3333444327ATP synthase subunit C
1112221212Peroxidase
3113311215Beta-lactamase
4334433327C-5 cytosine-specific DNA methylase
11114NADH dehydrogenase
2225222326242121184Calcineurin-like phosphoesterase
881371263360Cellulase (glycosyl hydrolase family 5)
66661086654tRNA synthetases class II (D, K and N)
3536354037363434287Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
1211141514121016104Aminotransferase class I and II
88891187968Phosphoribosyl transferase domain
111212111412101193Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111112119Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
111111118Chaperonin 10 Kd subunit
101211121311121394C2 domain
1921191817221819153PH domain
59781199664bZIP transcription factor
9131213139101291Aldehyde dehydrogenase family
6170757779455676539Fungal Zn(2)-Cys(6) binuclear cluster domain
1819202219181919154Cytochrome b5-like Heme/Steroid binding domain
2333322220Oxidoreductase molybdopterin binding domain
9911910991177Oxidoreductase NAD-binding domain
2918252625211939202SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2023232124222125179Ubiquitin-conjugating enzyme
5555665542Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111121119Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
11765343342Chitin recognition protein
3238512529Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
123221112Cupin
3332332423Annexin
1432133320Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
33343333252-oxoacid dehydrogenases acyltransferase (catalytic domain)
4343433327Catalase
7111111114Disintegrin
22UDP-glucoronosyl and UDP-glucosyl transferase
5455463638Aminotransferase class-III
2222322217Ribosomal protein S19
111111118DNA gyrase B
4444454433Thiamine pyrophosphate enzyme, central domain
3333334325Lyase
2232222217Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111118Adenylate and Guanylate cyclase catalytic domain
11Atrial natriuretic peptide
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
1214Aromatic amino acid lyase
111121119Pyruvate kinase, barrel domain
10101010109101079Kinesin motor domain
3127282728282626221DnaJ domain
1414151415141414114Proteasome subunit
3322512321Major intrinsic protein
111111118ATP synthase
1231212113Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
2321222216Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
2214151021111216121Ubiquitin family
3433434327Cofilin/tropomyosin-type actin-binding protein
333223332214-3-3 protein
5344533431Alkaline phosphatase
211221110Zinc carboxypeptidase
18192322269818143Aldo/keto reductase family
1420181914141618133Myb-like DNA-binding domain
4444444432Forkhead domain
11111117Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
3212322217Ribosomal protein S14p/S29e
4433344328FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
2232222217
4454654537Flavodoxin
111121119Calreticulin family
26811139941595Common central domain of tyrosinase
72586645566Aminotransferase class-V
111121119Ribonucleotide reductase, small chain
4942484643453545353DEAD/DEAH box helicase
90718082798065100647Helicase conserved C-terminal domain
1711211115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
211231212Ribosomal protein L5
4669644645Pyridoxal-dependent decarboxylase conserved domain
3333333324Citrate synthase, C-terminal domain
5555555540GHMP kinases N terminal domain
4556552537Biotin carboxylase, N-terminal domain
111111219Tryptophan synthase alpha chain
9991011891176Pyridoxal-phosphate dependent enzyme
1313131317121111103NUDIX domain
5345633534pfkB family carbohydrate kinase
441612119Glycosyl hydrolases family 28
2222322217Ribosomal protein L3
2222322217Ribosomal protein L11, RNA binding domain
11121191111121087Histidine phosphatase superfamily (branch 1)
1111114111Thymidylate synthase
21317Lipoxygenase
4444544433ATP synthase alpha/beta chain, C terminal domain
5465556642Calponin homology (CH) domain
5554444536Glutamine amidotransferases class-II
3222122216Ribosomal protein S15
145Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2222422218Ribosomal protein S2
2322222217SRF-type transcription factor (DNA-binding and dimerisation domain)
7797868759GATA zinc finger
1318172023111626144Amino acid permease
3442536431Prolyl oligopeptidase family
1222122113Ribosomal protein L30p/L7e
4466634538Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4444444432Aconitase family (aconitate hydratase)
6333311121Glycosyl hydrolase family 10
6454443434Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
11Tetraspanin family
33Galactoside-binding lectin
2224412219Ribosomal protein S10p/S20e
3333343325Arrestin (or S-antigen), N-terminal domain
11Interleukin-1 / 18
111112119Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2212222215Ribosomal protein L6
3333333526Polyprenyl synthetase
3234432324Hexokinase
46648541047Dynamin family
1111311110Transcription factor TFIID (or TATA-binding protein, TBP)
3544334430Rieske [2Fe-2S] domain
11439Proton-conducting membrane transporter
7778774754Biotin-requiring enzyme
111111118Phosphofructokinase
2221221113Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
3333333324FGGY family of carbohydrate kinases, N-terminal domain
11Prion/Doppel alpha-helical domain
7767776754Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
5344622329Transcription factor TFIIB repeat
6565845645Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
124778531460Chromo (CHRromatin Organisation MOdifier) domain
2222221215Phosphatidylinositol-specific phospholipase C, Y domain
3342223322Phosphatidylinositol-specific phospholipase C, X domain
4666556442D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2122212214Malic enzyme, N-terminal domain
22221112136-phosphogluconate dehydrogenase, C-terminal domain
7644635742Multicopper oxidase
1113Granulin
107111110661374WW domain
1212211212Ribosomal RNA adenine dimethylase
2431313Yeast PIR protein repeat
107107104108115121100108870WD domain, G-beta repeat
4543345432Heavy-metal-associated domain
4334444430Adenylate kinase
3331223118Phosphoglucomutase/phosphomannomutase, C-terminal domain
2223222217Ribosomal protein S8
2111321213Ribosomal protein S11
4444534634LIM domain
11Matrixin
1333312117Regulator of chromosome condensation (RCC1) repeat
2222221215Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222332218chorismate binding enzyme
633443332960s Acidic ribosomal protein
4444464434Prenyltransferase and squalene oxidase repeat
4647566543Protein kinase C terminal domain
11111117Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
6666676649Bromodomain
598810611966Acyl-CoA dehydrogenase, C-terminal domain
1516161516161415123Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
111227Ribonuclease T2 family
3333533326HSF-type DNA-binding
2223321217SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
4653733637Serine carboxypeptidase
81088898867Phosphatidylinositol 3- and 4-kinase
1121211110Transketolase, thiamine diphosphate binding domain
22Glycosyl hydrolases family 11
2224222319Inositol monophosphatase family
4445544434Glutaredoxin
2222232318Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
1121211211Iron-containing alcohol dehydrogenase
1123121213Ribosomal protein L10
3445533532KOW motif
11111117Ribosomal protein L34
2332232219RF-1 domain
1222222215Sodium:solute symporter family
111112119Imidazoleglycerol-phosphate dehydratase
112111119DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
5655754542Protein phosphatase 2C
4344644332Nucleotidyl transferase
213333116Carbonic anhydrase
112121210Phosphoribulokinase / Uridine kinase family
4545554436Fatty acid desaturase
6666666850MutS domain V
111111118Delta-aminolevulinic acid dehydratase
1344333223Arginase family
6766676650MCM P-loop domain
1112211211Squalene/phytoene synthase
8101011879770FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
1620242626152120168AMP-binding enzyme
5333333326G-protein alpha subunit
56687108858HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
710121212791180His Kinase A (phospho-acceptor) domain
2333233322Armadillo/beta-catenin-like repeat
2039253024353851262Tetratricopeptide repeat
3322521220Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
91310111212101087BRCA1 C Terminus (BRCT) domain
5655665543Glycosyl transferases group 1
2233222319Glycosyl transferase family 2
1212122112SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
1410252327Pectate lyase
111216ribonuclease
111111118Urease, gamma subunit
3544333429CoA-ligase
58781157657Phosphopantetheine attachment site
1232332218Formyl transferase
6877877757Metallopeptidase family M24
1310151411111016100Leucine Rich Repeat
2021172027141921159alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
4444444432PB1 domain
2222222216Staphylococcal nuclease homologue
101011101011111083Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
5745555541Zinc finger, ZZ type
2121111211HRDC domain
1010910910101078CBS domain
2222222216Ribosomal protein L13
2222222115Ribosomal protein L4/L1 family
111111118Clp protease
4344445331S1 RNA binding domain
111112119HIUase/Transthyretin family
3443544532AhpC/TSA family
4454443432tRNA synthetases class I (W and Y)
121121210UvrD/REP helicase N-terminal domain
4654545639Rhodanese-like domain
2222221215Universal stress protein family
2121242036171322174Acetyltransferase (GNAT) family
211111119SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222322217AIR synthase related protein, N-terminal domain
8888989866tRNA synthetase class II core domain (G, H, P, S and T)
2122221214SpoU rRNA Methylase family
11Phage integrase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111121119Glycosyl transferase family, a/b domain
11111117PDZ domain
2334323323Class II Aldolase and Adducin N-terminal domain
4444444432Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5555555540Fes/CIP4, and EFC/F-BAR homology domain
3555444636IQ calmodulin-binding motif
2422232219Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4555544537Phospholipase D Active site motif
111111118Regulator of G protein signaling domain
4444444432GTPase-activator protein for Ras-like GTPase
4445554536RasGEF domain
5555545539RasGEF N-terminal motif
10111111119101083RhoGAP domain
5666666647RhoGEF domain
55564251042SPRY domain
3433334326RNA polymerase Rpb1, domain 2
3211112112Guanylate kinase
3443543329Gelsolin repeat
979101168868UBA/TS-N domain
1916191316151318129PHD-finger
11Filamin/ABP280 repeat
112111119GGL domain
6666666648HECT-domain (ubiquitin-transferase)
2211112111Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
4566645945Ribonuclease III domain
1212211212Region in Clathrin and VPS
3233433324RanBP1 domain
2223222318PPIC-type PPIASE domain
1322223318Zn-finger in Ran binding protein and others
1318162024151219137Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1142432320Poly(ADP-ribose) polymerase catalytic domain
1112117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
370948465175403981948F-box domain
111111118Elongation factor 1 gamma, conserved domain
2222211214Calpain family cysteine protease
1221212213Copper fist DNA binding domain
4545555538CRAL/TRIO domain
5681116166817138BTB/POZ domain
3328Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3343433326Voltage gated chloride channel
1127131622Caspase domain
156108621452GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
1113NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1413161413141412110ABC transporter transmembrane region
123Integrase core domain
5465554539FAD binding domain
2212212214Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2223421218ribosomal L5P family C-terminus
4646755643Insulinase (Peptidase family M16)
3333333324Dehydrogenase E1 component
111111118Lumazine binding domain
6666666648Elongation factor G C-terminus
4444463433HMGL-like
4434454432DnaJ central domain
2222222216Ribosomal protein L1p/L10e family
78786781061Cation transporting ATPase, C-terminus
89887981168Cation transporter/ATPase, N-terminus
1111116dUTPase
4444444432Aconitase C-terminal domain
3444433429Amino acid kinase family
112111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
47332153753Acyl transferase domain
111111118Urease beta subunit
2343332323Dihydrodipicolinate synthetase family
2826262728222331211haloacid dehalogenase-like hydrolase
1242311115Glycosyl hydrolases family 2
7635644439Glycosyl hydrolases family 18
1611411116Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
11111218Acylphosphatase
111112119Adenylosuccinate synthetase
1112111210Asparaginase, N-terminal
3323223321Peptidase S24-like
111121119Inorganic pyrophosphatase
7558764749Glycosyl hydrolases family 16
2122421216Glycosyl hydrolases family 15
2234511220NADH:flavin oxidoreductase / NADH oxidase family
12221112123-hydroxyacyl-CoA dehydrogenase, C-terminal domain
1221212112Glycosyl hydrolase family 20, catalytic domain
4334543329HhH-GPD superfamily base excision DNA repair protein
111121119AIR carboxylase
25891516551699GMC oxidoreductase
2222222216Asparagine synthase
48918715132103Fungal cellulose binding domain
5666666647Septin
211111119EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
1221118Flavin-binding monooxygenase-like
3333333324tRNA synthetases class I (E and Q), catalytic domain
111121119tRNA synthetases class I (R)
4443433429XPG N-terminal domain
6885767855Metallo-beta-lactamase superfamily
11211118F5/8 type C domain
2232222217Choline/Carnitine o-acyltransferase
111111118Putative esterase
111112119Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111121119Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
3433333325RNB domain
4266622533Dioxygenase
3223332321CNH domain