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PFAM Domains • Helicostylum pulchrum RSA 2064 v1.0
Annotations/GenomesHelpul1Mucci2Parpar1Pilano1Thaele1Zyghet1TotalAnnotation Description
PFAMs
11,8259,58411,39111,63711,91312,69269,042
117 transmembrane receptor (Secretin family)
543254237 transmembrane sweet-taste receptor of 3 GCPR
444442434350266ATPase family associated with various cellular activities (AAA)
455246464647282ABC transporter
10999101360ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
201719202021117Elongation factor Tu GTP binding domain
433744414452261Helix-loop-helix DNA-binding domain
47354427Hsp20/alpha crystallin family
251120192717119Hsp70 protein
12141113111475KH domain
344135413839228SH3 domain
15111415121481Actin
114291281193Ankyrin repeat
12121012121371ADP-ribosylation factor family
232721222432149Eukaryotic aspartyl protease
77677842Cyclic nucleotide-binding domain
1111127Cytochrome c
1111217Double-stranded RNA binding motif
4312147EF hand
114Fe-4S binding domain
111115Fibronectin type III domain
22Globin
61381171055Glutathione S-transferase, C-terminal domain
43334522Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
232723212327144Homeodomain
55545529lactate/malate dehydrogenase, NAD binding domain
16171716161698Myosin head (motor domain)
504134454855273Cytochrome P450
2412372342442502531,459Protein kinase domain
16181716161598Pyridine nucleotide-disulphide oxidoreductase
586060617265376Ras family
201518171821109Response regulator receiver domain
33RNase H
1028891101104101587RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1113Reverse transcriptase (RNA-dependent DNA polymerase)
33333217Copper/zinc superoxide dismutase (SODC)
1211128Iron/manganese superoxide dismutases, alpha-hairpin domain
191616181921109Subtilase family
354734273740220Sugar (and other) transporter
13151515141587Thioredoxin
24222214Trypsin
78828740Tubulin/FtsZ family, GTPase domain
11von Willebrand factor type A domain
3914029353844325Zinc finger, C2H2 type
12644131113117Zinc finger, C3HC4 type (RING finger)
74517301310122Zinc knuckle
66677537Protein-tyrosine phosphatase
314534313040211short chain dehydrogenase
242919262337158Zinc-binding dehydrogenase
710877847Thiolase, N-terminal domain
23322214Beta-ketoacyl synthase, N-terminal domain
1411182Fe-2S iron-sulfur cluster binding domain
22222515Enolase, C-terminal TIM barrel domain
11Cytochrome C oxidase subunit II, periplasmic domain
10991111959Glutamine amidotransferase class-I
13111113131576TCP-1/cpn60 chaperonin family
65586535Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
423040374339231E1-E2 ATPase
1414141414878Core histone H2A/H2B/H3/H4
111115Alpha amylase, catalytic domain
1041110111056Phorbol esters/diacylglycerol binding domain (C1 domain)
887781149Bacterial transferase hexapeptide (six repeats)
54776736tRNA synthetases class I (I, L, M and V)
131819181718103Cyclin, N-terminal domain
23212212Carboxylesterase family
55556632DNA polymerase family B
35433523ATP synthase subunit C
111126Legume lectin domain
24433420Peroxidase
114Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
2112118Beta-lactamase
1211117C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
323736343636211Calcineurin-like phosphoesterase
43445727Cellulase (glycosyl hydrolase family 5)
66666737tRNA synthetases class II (D, K and N)
646361626472386Mitochondrial carrier protein
202020192022121Aminotransferase class I and II
713767646Phosphoribosyl transferase domain
14151515151589Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1211128Phosphoglycerate kinase
33333318Ribosomal protein S4/S9 N-terminal domain
44444323Ribosomal protein S12/S23
12221210Chaperonin 10 Kd subunit
172319171820114C2 domain
384435353530217PH domain
352831333639202bZIP transcription factor
16151515161895Aldehyde dehydrogenase family
474657504654300Fungal Zn(2)-Cys(6) binuclear cluster domain
294134323140207Cytochrome b5-like Heme/Steroid binding domain
1221118Oxidoreductase molybdopterin binding domain
14161414141587Oxidoreductase NAD-binding domain
202024232227136SNF2 family N-terminal domain
44444424Ribosomal protein S7p/S5e
212222222325135Ubiquitin-conjugating enzyme
987891051Isocitrate/isopropylmalate dehydrogenase
55455529Ribosomal Proteins L2, RNA binding domain
44444525Hsp90 protein
33233216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
22222111Dihydrofolate reductase
3635101138Cysteine-rich secretory protein family
45544527Ribosomal protein S3, C-terminal domain
565666342-oxoacid dehydrogenases acyltransferase (catalytic domain)
54445426Catalase
33333217Disintegrin
131096121161UDP-glucoronosyl and UDP-glucosyl transferase
56655633Aminotransferase class-III
44444424Ribosomal protein S19
1111116DNA gyrase B
1265610645Thiamine pyrophosphate enzyme, central domain
44434524Lyase
33333318Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22212211Ferritin-like domain
22222212Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111127Indole-3-glycerol phosphate synthase
23334217Pyruvate kinase, barrel domain
292829302630172Kinesin motor domain
423942374038238DnaJ domain
14141414141686Proteasome subunit
32233619Major intrinsic protein
22222212ATP synthase
787778443'5'-cyclic nucleotide phosphodiesterase
1111127Profilin
44444626Ribosomal protein L22p/L17e
33333217Ribosomal protein L14p/L23e
242217262135145Ubiquitin family
66777639Cofilin/tropomyosin-type actin-binding protein
4334452314-3-3 protein
44344625Alkaline phosphatase
192618151527120Aldo/keto reductase family
202319242126133Myb-like DNA-binding domain
10101010101060Forkhead domain
41444421Ribosomal protein L16p/L10e
44343422Ribosomal protein S14p/S29e
66466735FKBP-type peptidyl-prolyl cis-trans isomerase
21222211Glutathione peroxidase
55
101591091265Flavodoxin
1111116Calreticulin family
778871148Aminotransferase class-V
23312314Ribonucleotide reductase, small chain
614852535560329DEAD/DEAH box helicase
838184818286497Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
44444424Ribosomal protein L23
1111138Pyridoxal-dependent decarboxylase, C-terminal sheet domain
43344523Ribosomal protein L5
44444424Pyridoxal-dependent decarboxylase conserved domain
31233315Citrate synthase, C-terminal domain
66666636GHMP kinases N terminal domain
10119910958Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
9109991359Pyridoxal-phosphate dependent enzyme
112'Paired box' domain
202320222223130NUDIX domain
67656737pfkB family carbohydrate kinase
6225621Glycosyl hydrolases family 28
44444525Ribosomal protein L3
44444525Ribosomal protein L11, RNA binding domain
1011111291063Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
10999101259ATP synthase alpha/beta chain, C terminal domain
14121014131881Calponin homology (CH) domain
512555739Glutamine amidotransferases class-II
33233216Ribosomal protein S15
12222110'Cold-shock' DNA-binding domain
54555529Thaumatin family
111115Fructose-1-6-bisphosphatase, N-terminal domain
44444424Ribonucleotide reductase, all-alpha domain
54455528Ribosomal protein S2
810999954SRF-type transcription factor (DNA-binding and dimerisation domain)
413638394344241GATA zinc finger
10211089866Amino acid permease
667661041Prolyl oligopeptidase family
65556431Ribosomal protein L30p/L7e
35333421Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
56655835Aconitase family (aconitate hydratase)
33323216Glycosyl hydrolases family 17
34333420Ribosomal protein S5, N-terminal domain
66656635Nucleoside diphosphate kinase
46644630Tetraspanin family
23333317Ribosomal protein S10p/S20e
322233333240192Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
22222212Carbohydrate phosphorylase
22222212SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
33333419Ribosomal protein L6
55555732Polyprenyl synthetase
11111011111266Hexokinase
971089851Dynamin family
1111116Biopterin-dependent aromatic amino acid hydroxylase
22222111Transcription factor TFIID (or TATA-binding protein, TBP)
45444425Rieske [2Fe-2S] domain
22Proton-conducting membrane transporter
14121313141480Biotin-requiring enzyme
22222111Phosphofructokinase
22222313Ribosomal protein S17
33323418Hydroxymethylglutaryl-coenzyme A reductase
56665634FGGY family of carbohydrate kinases, N-terminal domain
32222314Sodium:dicarboxylate symporter family
2114119151383Enoyl-CoA hydratase/isomerase
44434423Ribosomal protein S9/S16
11114PTS HPr component phosphorylation site
33333419Transcription factor TFIIB repeat
898910953Cytidine and deoxycytidylate deaminase zinc-binding region
111115Molybdopterin oxidoreductase
1591815191389Chromo (CHRromatin Organisation MOdifier) domain
11114Phosphatidylinositol-specific phospholipase C, X domain
45545528D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
55555530Malic enzyme, N-terminal domain
232222136-phosphogluconate dehydrogenase, C-terminal domain
75567838Multicopper oxidase
1981216191488WW domain
33333217Ribosomal RNA adenine dimethylase
1651581641701711801,008WD domain, G-beta repeat
65456531Heavy-metal-associated domain
56655633Adenylate kinase
32233316Phosphoglucomutase/phosphomannomutase, C-terminal domain
33333318Ribosomal protein S8
34223317Ribosomal protein S11
16131614161590LIM domain
61577632Regulator of chromosome condensation (RCC1) repeat
44444424Ribosomal protein S13/S18
1111116Tau and MAP protein, tubulin-binding repeat
22222212chorismate binding enzyme
8888874760s Acidic ribosomal protein
44443423Prenyltransferase and squalene oxidase repeat
119101110960Protein kinase C terminal domain
1113Spectrin repeat
1112117Single-strand binding protein family
11Type II/IV secretion system protein
111115S-adenosylmethionine synthetase, N-terminal domain
172018171917108Bromodomain
151516161622100Acyl-CoA dehydrogenase, C-terminal domain
202620222821137Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
1111149Ribonuclease T2 family
182019171919112HSF-type DNA-binding
22323214SRP54-type protein, GTPase domain
22222212Urease alpha-subunit, N-terminal domain
45656632Serine carboxypeptidase
13131212131174Phosphatidylinositol 3- and 4-kinase
22223213Transketolase, thiamine diphosphate binding domain
1111116WHEP-TRS domain
22222212Inositol monophosphatase family
6108861048Glutaredoxin
22222313Isocitrate lyase family
22222212Serine hydroxymethyltransferase
1111116Iron-containing alcohol dehydrogenase
44444323Ribosomal protein L10
610978949KOW motif
1111116Ribosomal protein L34
1111116Ribosomal protein L33
33333318RF-1 domain
111115Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
22222212IMP dehydrogenase / GMP reductase domain
23332316Glucose-6-phosphate dehydrogenase, NAD binding domain
10101010101060Protein phosphatase 2C
766771043Nucleotidyl transferase
22122211Carbonic anhydrase
32222213Phosphoribulokinase / Uridine kinase family
11861011955Fatty acid desaturase
67666637MutS domain V
1211117Delta-aminolevulinic acid dehydratase
22222616Arginase family
76666637MCM P-loop domain
43445626Squalene/phytoene synthase
181720201719111FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
433734343936223AMP-binding enzyme
11121211111269G-protein alpha subunit
222123192223130HMG (high mobility group) box
11Cytochrome c oxidase subunit III
97998951His Kinase A (phospho-acceptor) domain
101099101159Armadillo/beta-catenin-like repeat
283624282521162Tetratricopeptide repeat
68659539Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
610665336BRCA1 C Terminus (BRCT) domain
897771048Glycosyl transferases group 1
24222214Glycosyl transferase family 2
52454525SAM domain (Sterile alpha motif)
1122118linker histone H1 and H5 family
111115Ribosomal protein L7/L12 C-terminal domain
22222212Urease, gamma subunit
34433320CoA-ligase
68697844Phosphopantetheine attachment site
32222213Formyl transferase
15151515151590Metallopeptidase family M24
8331313121190Leucine Rich Repeat
625867658alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
1089108954PB1 domain
22222212Staphylococcal nuclease homologue
292731302935181Rab-GTPase-TBC domain
1111116Tudor domain
32332215WH1 domain
55666634Zinc finger, ZZ type
22112210HRDC domain
15181715171698CBS domain
53355526Ribosomal protein L13
34433421Ribosomal protein L4/L1 family
1111116Clp protease
53444323S1 RNA binding domain
1111116HIUase/Transthyretin family
75676839AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
22122211UvrD/REP helicase N-terminal domain
1481213131171Rhodanese-like domain
13121412131478Universal stress protein family
284326252631179Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111127C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
8119991056tRNA synthetase class II core domain (G, H, P, S and T)
33333318SpoU rRNA Methylase family
33333419Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
1113PDZ domain
22222212Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
21222110Diacylglycerol kinase accessory domain
1161012111464Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
12121213121475Fes/CIP4, and EFC/F-BAR homology domain
79677642IQ calmodulin-binding motif
33333318Phosphoinositide 3-kinase family, accessory domain (PIK domain)
68666739Phospholipase D Active site motif
1981518181795Regulator of G protein signaling domain
9101010101160GTPase-activator protein for Ras-like GTPase
201719202018114RasGEF domain
1391214131475RasGEF N-terminal motif
373334363738215RhoGAP domain
353131363435202RhoGEF domain
12121110131068SPRY domain
33333520RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
87788745Gelsolin repeat
11131310111371UBA/TS-N domain
252324292531157PHD-finger
43344422GGL domain
10101010101060HECT-domain (ubiquitin-transferase)
1211117Helix-hairpin-helix motif
31323315MSP (Major sperm protein) domain
23222213Ribonuclease III domain
62666531Region in Clathrin and VPS
22222212RanBP1 domain
1221118PPIC-type PPIASE domain
42544524Zn-finger in Ran binding protein and others
15171413131587Zinc finger C-x8-C-x5-C-x3-H type (and similar)
221117B-box zinc finger
111115Poly(ADP-ribose) polymerase catalytic domain
21222211Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1310512171319179F-box domain
22222313Elongation factor 1 gamma, conserved domain
1111127Calpain family cysteine protease
66465734Copper fist DNA binding domain
11101111111165CRAL/TRIO domain
1271215151677BTB/POZ domain
87877946Ricin-type beta-trefoil lectin domain
9113115Inhibitor of Apoptosis domain
22222212Voltage gated chloride channel
45444425Caspase domain
11151212121577GDSL-like Lipase/Acylhydrolase
52656933Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
192520191921123ABC transporter transmembrane region
11Integrase core domain
887881049FAD binding domain
1111127Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
23222213HAMP domain
44444525ribosomal L5P family C-terminus
977109951Insulinase (Peptidase family M16)
66566635Dehydrogenase E1 component
1111116Lumazine binding domain
77677741Elongation factor G C-terminus
666106640HMGL-like
67567738DnaJ central domain
111115Sulfotransferase domain
53555528Ribosomal protein L1p/L10e family
171316151723101Cation transporting ATPase, C-terminus
271821192519129Cation transporter/ATPase, N-terminus
112dUTPase
56655835Aconitase C-terminal domain
67666536Amino acid kinase family
1111127N-(5'phosphoribosyl)anthranilate (PRA) isomerase
23322315Acyl transferase domain
22222212Urease beta subunit
13311110Dihydrodipicolinate synthetase family
294929243427192haloacid dehalogenase-like hydrolase
12141310131375Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
111115Translation initiation factor IF-3, C-terminal domain
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
43234319Peptidase S24-like
44454425Inorganic pyrophosphatase
66767739Glycosyl hydrolases family 16
33443522Glycosyl hydrolases family 15
121271010354NADH:flavin oxidoreductase / NADH oxidase family
222122113-hydroxyacyl-CoA dehydrogenase, C-terminal domain
64346427Glycosyl hydrolase family 20, catalytic domain
44444626HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
45344525GMC oxidoreductase
37733831Asparagine synthase
212229Fungal cellulose binding domain
13141514141686Septin
22122312EF-1 guanine nucleotide exchange domain
22222212Homoserine dehydrogenase
31324417Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
33333318tRNA synthetases class I (R)
94668841XPG N-terminal domain
912910101060Metallo-beta-lactamase superfamily
1121117F5/8 type C domain
56676535Choline/Carnitine o-acyltransferase
1111116Putative esterase
44534525Glycosyl hydrolase family 9
1111116Ferrochelatase
44344524Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111127Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
109899954RNB domain
13121316131380CNH domain
55555530Diacylglycerol kinase catalytic domain
15121515151688Dual specificity phosphatase, catalytic domain
22222212MyTH4 domain
1151112111262P21-Rho-binding domain
302331333032179PX domain
65777537Ras association (RalGDS/AF-6) domain
77778743UBX domain
87888746VHS domain
1113Phosphoinositide 3-kinase C2
44444626DAHP synthetase I family
26643526Carbon-nitrogen hydrolase
1111127Prephenate dehydratase
8117681252Syntaxin
12141213121376Pumilio-family RNA binding repeat
766781044Histone-like transcription factor (CBF/NF-Y) and archaeal histone
22222212Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
33333318impB/mucB/samB family
111115Ribonuclease P
33
53344423Ribosomal L15
83788842Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
111115Ribosomal L28 family
33323317Ribosomal L29 protein
33323418Ribosomal L39 protein
12212210Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
33333621RNA pseudouridylate synthase
68766740Histone deacetylase domain
12221311Glycosyltransferase family 10 (fucosyltransferase) C-term
56555531POT family
21432416PWWP domain
232422222620137SET domain
510873336Isochorismatase family
76667941Permease family
33233317Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
85568941XPG I-region
1111116DNA photolyase
111115Zinc dependent phospholipase C
33333520Cytosol aminopeptidase family, catalytic domain
2111218Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
89667743Acyl CoA binding protein
56666635Cullin family
1111116Elongation factor TS
35342421FAD binding domain
711456437EamA-like transporter family
22
99999752ThiF family
22222212Ribosomal family S4e
24222214Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
34333319Ammonium Transporter Family
11111111111166Sulfate permease family
44344423MATH domain
1111116Uncharacterized protein family UPF0004
1221129Dehydratase family
1221129Transaldolase/Fructose-6-phosphate aldolase
44334422Mechanosensitive ion channel
21222211GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44444626Adaptor complexes medium subunit family
86878946Exonuclease
33333419Dipeptidyl peptidase IV (DPP IV) N-terminal region
95469841Glycosyl hydrolase family 3 N terminal domain
23333519Ribosomal protein L44
72777535Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
33333419Nucleosome assembly protein (NAP)
56555632Synaptobrevin
2112219GMP synthase C terminal domain
11LAGLIDADG endonuclease
33333318Adenosine/AMP deaminase
131117Barwin family
67766638Oxidoreductase FAD-binding domain
22222212Histidine biosynthesis protein
78778946Glycosyltransferase family 20
21122311UDP-glucose/GDP-mannose dehydrogenase family, central domain
23233114Carbamoyl-phosphate synthase small chain, CPSase domain
3137PAS fold
33333419Probable molybdopterin binding domain
55555530Sec1 family
33333419GDP dissociation inhibitor
88888646Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
66566635Initiation factor 2 subunit family
11PQQ enzyme repeat
22222313Electron transfer flavoprotein domain
1111116Uricase
34433320Ribosomal S3Ae family
1111116Ribosomal L27 protein
111115GTP1/OBG
44444525Gamma-glutamyltranspeptidase
2226Ribosomal L40e family
22222212GrpE
22222111TatD related DNase
32234620Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
1121117Receptor L domain
54555529Dynamin central region
11Syndecan domain
11112286-O-methylguanine DNA methyltransferase, DNA binding domain
56565734Carboxyl transferase domain
22223314UbiA prenyltransferase family
53346526Endoribonuclease L-PSP
3333315Phosphorylase superfamily
45555630Cys/Met metabolism PLP-dependent enzyme
55456833Glycosyl hydrolases family 31
1111116NADH ubiquinone oxidoreductase, 20 Kd subunit
1111912111165ABC-2 type transporter
2222210Bestrophin, RFP-TM, chloride channel
53555528Amino-transferase class IV
777871046CDP-alcohol phosphatidyltransferase
1111127Calpain large subunit, domain III
33333318ATP dependent DNA ligase domain
1111116FMN-dependent dehydrogenase
1