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PFAM Domains • Xylaria cubensis CBS 116.85 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Entma1HypEC38_3Xylacu1Xylcas124033_1Xylcube1Xylcur114988_1Xylhyp1Xylpal124036_1Xyltel121673_1TotalAnnotation Description
PFAMs
10,48610,3948,53210,2119,14911,45711,36912,12712,50811,45910,94812,161130,801
11137 transmembrane receptor (rhodopsin family)
112222212157 transmembrane receptor (Secretin family)
885453505866626977626071770ATPase family associated with various cellular activities (AAA)
493843384740404245454242511ABC transporter
44444444444448ATP synthase alpha/beta family, nucleotide-binding domain
141514151415161515151515178Elongation factor Tu GTP binding domain
13810111010111110111110126Helix-loop-helix DNA-binding domain
22212122211119Hsp20/alpha crystallin family
810711714141312151114136Hsp70 protein
87879777777889KH domain
1113SH2 domain
271226122511141214111313190SH3 domain
910109910101010101010117Actin
1722566168933354853322552646Ankyrin repeat
213121121216PAN domain
78878888977792ADP-ribosylation factor family
222217221623222322212123254Eukaryotic aspartyl protease
44444444444448Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111111111112Cytochrome c
112Double-stranded RNA binding motif
17219318223323377EF hand
11134Fe-4S binding domain
21212111111115Fibronectin type III domain
22223222222225Globin
20815151916131615111515178Glutathione S-transferase, C-terminal domain
21111211121115Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
85858675755574Homeodomain
32222322222226lactate/malate dehydrogenase, NAD binding domain
44445444544450Myosin head (motor domain)
2381221181291601711552052141941901962,092Cytochrome P450
1811151131331251571641821901741641791,877Protein kinase domain
191317141416161617181718195Pyridine nucleotide-disulphide oxidoreductase
282825272627272727302926327Ras family
131113101214151515141113156Response regulator receiver domain
1252648566741075RNase H
605159576052525253495353651RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
23232333333333Copper/zinc superoxide dismutase (SODC)
22222222222224Iron/manganese superoxide dismutases, alpha-hairpin domain
172520182118252025212240272Subtilase family
597859536963686672595469769Sugar (and other) transporter
131211121312121211121313146Thioredoxin
4215121723Trypsin
56445545555659Tubulin/FtsZ family, GTPase domain
51441116von Willebrand factor type A domain
912363257030272830292932477Zinc finger, C2H2 type
547437458888547204Zinc finger, C3HC4 type (RING finger)
1031116334132249Zinc knuckle
22222222222224Protein-tyrosine phosphatase
2001151471171701491591861831611341551,876short chain dehydrogenase
995363527178738584756479876Zinc-binding dehydrogenase
66565666666670Thiolase, N-terminal domain
693428333747415760574460567Beta-ketoacyl synthase, N-terminal domain
748575555455652Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111111211113Enolase, C-terminal TIM barrel domain
1113Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
119811898991099110Glutamine amidotransferase class-I
101010101010101011101010121TCP-1/cpn60 chaperonin family
112ATP synthase A chain
44435333334342Glutamine synthetase, catalytic domain
22222222222224Triosephosphate isomerase
152118191819201920201920228E1-E2 ATPase
1288888898888101Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
67444444453352Alpha amylase, catalytic domain
22222222222224Phorbol esters/diacylglycerol binding domain (C1 domain)
77787777687785Bacterial transferase hexapeptide (six repeats)
45363757756563tRNA synthetases class I (I, L, M and V)
107686888888893Cyclin, N-terminal domain
271819141816171518221514213Carboxylesterase family
44454444444449DNA polymerase family B
64545555554558ATP synthase subunit C
55566687767674Peroxidase
18710151319131815181218176Beta-lactamase
44333444443444C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
282326242524242324272626300Calcineurin-like phosphoesterase
101512171219181919171318189Cellulase (glycosyl hydrolase family 5)
87878778977891tRNA synthetases class II (D, K and N)
383738373938383838393738455Mitochondrial carrier protein
111111118recA bacterial DNA recombination protein
191816211521182022212023234Aminotransferase class I and II
86857544445565Phosphoribosyl transferase domain
101010101010101010101010120Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11215Ribosome inactivating protein
11111111111112Phosphoglycerate kinase
22222222222224Ribosomal protein S4/S9 N-terminal domain
22222222222224Ribosomal protein S12/S23
1111111111111Bacterial regulatory helix-turn-helix proteins, AraC family
1111111111111Chaperonin 10 Kd subunit
131112101288881098117C2 domain
188198189988988130PH domain
111710151018171821171817189bZIP transcription factor
202018221821202322232223252Aldehyde dehydrogenase family
2321561701501961962102272281901892232,367Fungal Zn(2)-Cys(6) binuclear cluster domain
252423232426242525252423291Cytochrome b5-like Heme/Steroid binding domain
42433333333337Oxidoreductase molybdopterin binding domain
171218141816161718171618197Oxidoreductase NAD-binding domain
332726263132293233313134365SNF2 family N-terminal domain
22221222222223Ribosomal protein S7p/S5e
232121222121212121221922255Ubiquitin-conjugating enzyme
78676777776782Isocitrate/isopropylmalate dehydrogenase
22222222222224Ribosomal Proteins L2, RNA binding domain
11111111111112Hsp90 protein
22222222222224Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111111111112Dihydrofolate reductase
54615236434750Chitin recognition protein
22323333332332Cysteine-rich secretory protein family
11111111111112Ribosomal protein S3, C-terminal domain
44434243333340Cupin
22313111111118Annexin
11111111111112Eukaryotic-type carbonic anhydrase
21121222222221Chalcone and stilbene synthases, N-terminal domain
333333333333362-oxoacid dehydrogenases acyltransferase (catalytic domain)
54738544456762Catalase
11111111111112Disintegrin
1421337932540UDP-glucoronosyl and UDP-glucosyl transferase
911768888877996Aminotransferase class-III
23223222222226Ribosomal protein S19
11111112111113DNA gyrase B
74445456645660Thiamine pyrophosphate enzyme, central domain
45333443334443Lyase
22232222222225Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Sodium:neurotransmitter symporter family
11111111111112Adenylate and Guanylate cyclase catalytic domain
11111111111112ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
11111111111112Indole-3-glycerol phosphate synthase
212223211218Aromatic amino acid lyase
11111111111112Pyruvate kinase, barrel domain
121212111213111111131110139Kinesin motor domain
313626283034323335302933377DnaJ domain
141314141414141414141414167Proteasome subunit
2342221113223Major intrinsic protein
11111111111112ATP synthase
11112222221118Glycosyl hydrolase family 1
111111111111123'5'-cyclic nucleotide phosphodiesterase
11111111111112Profilin
12121222222221Ribosomal protein L22p/L17e
23222322222226Ribosomal protein L14p/L23e
1110910101411989910120Ubiquitin family
55555554555458Cofilin/tropomyosin-type actin-binding protein
2323233333333314-3-3 protein
52525222222233Alkaline phosphatase
65565766666670Zinc carboxypeptidase
393234273638404040332936424Aldo/keto reductase family
157127177768667105Myb-like DNA-binding domain
84444444434451Forkhead domain
2211111111113Glycosyl hydrolases family 32 N-terminal domain
12121222222221Ribosomal protein L16p/L10e
32222222222326Ribosomal protein S14p/S29e
43333333333337FKBP-type peptidyl-prolyl cis-trans isomerase
11111111111112Glutathione peroxidase
3227
85767788777986Flavodoxin
11111111111112Calreticulin family
149129815141415141317154Common central domain of tyrosinase
11911121012121213111110134Aminotransferase class-V
11111111111112Ribonucleotide reductase, small chain
414545444244444544474546532DEAD/DEAH box helicase
937578708078757882807883950Helicase conserved C-terminal domain
11111111111112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222222224Ribosomal protein L23
11111111112113Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211111111113Ribosomal protein L5
77676778987887Pyridoxal-dependent decarboxylase conserved domain
85343866665666Citrate synthase, C-terminal domain
55555555555560GHMP kinases N terminal domain
86766777866781Biotin carboxylase, N-terminal domain
11111111111112Tryptophan synthase alpha chain
101111111211101212111111133Pyridoxal-phosphate dependent enzyme
241819172020171819162020228NUDIX domain
76686786685881pfkB family carbohydrate kinase
76373888977881Glycosyl hydrolases family 28
32222213Luciferase-like monooxygenase
22222222222224Ribosomal protein L3
22212222222223Ribosomal protein L11, RNA binding domain
181916171814171717161618203Histidine phosphatase superfamily (branch 1)
11111111111112Thymidylate synthase
441344432433Lipoxygenase
44444444444448ATP synthase alpha/beta chain, C terminal domain
55455555455558Calponin homology (CH) domain
52436333323340Glutamine amidotransferases class-II
22122222222223Ribosomal protein S15
21111111111113Thaumatin family
22222222222224Fructose-1-6-bisphosphatase, N-terminal domain
11111111111112Ribonucleotide reductase, all-alpha domain
22122222222223Ribosomal protein S2
31222122222223SRF-type transcription factor (DNA-binding and dimerisation domain)
66676666666673GATA zinc finger
341633123713121212151213221Amino acid permease
66565677875876Prolyl oligopeptidase family
22212222222223Ribosomal protein L30p/L7e
671069557656678Histidine phosphatase superfamily (branch 2)
11111111111112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
64544544454453Aconitase family (aconitate hydratase)
32323222222227Glycosyl hydrolase family 10
42414212221227Glycosyl hydrolases family 17
22222222222224Ribosomal protein S5, N-terminal domain
11111111111112Nucleoside diphosphate kinase
11111121110Tetraspanin family
12121222222221Ribosomal protein S10p/S20e
33342233333335Arrestin (or S-antigen), N-terminal domain
11111111111112Phosphoglucose isomerase
11111111111112Carbohydrate phosphorylase
11111111111112SecY translocase
11111111111112Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222222224Ribosomal protein L6
103353544446556Polyprenyl synthetase
44535444454450Hexokinase
1115812918151816171514168Dynamin family
31111111111114Transcription factor TFIID (or TATA-binding protein, TBP)
77676666556774Rieske [2Fe-2S] domain
1111111111111Phytochrome region
31116Proton-conducting membrane transporter
989889999779101Biotin-requiring enzyme
11111111111112Phosphofructokinase
12222111111116Ribosomal protein S17
11111111111112Hydroxymethylglutaryl-coenzyme A reductase
33333333323335FGGY family of carbohydrate kinases, N-terminal domain
1688111015151414121013146Enoyl-CoA hydratase/isomerase
22222222222224Ribosomal protein S9/S16
22222222222224Transcription factor TFIIB repeat
89879810109978102Cytidine and deoxycytidylate deaminase zinc-binding region
11111111111112Molybdopterin oxidoreductase
126957867566885Chromo (CHRromatin Organisation MOdifier) domain
44444444444448Phosphatidylinositol-specific phospholipase C, Y domain
55565666666668Phosphatidylinositol-specific phospholipase C, X domain
81296799899810104D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222222222224Malic enzyme, N-terminal domain
222122222122226-phosphogluconate dehydrogenase, C-terminal domain
1414812914151718131213159Multicopper oxidase
1111109101091099911118WW domain
12112222221220Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
1221061031061081101091141191081061151,326WD domain, G-beta repeat
45446444444451Heavy-metal-associated domain
57363455565559Adenylate kinase
22222222222224Phosphoglucomutase/phosphomannomutase, C-terminal domain
12122333333329Ribosomal protein S8
22222222222224Ribosomal protein S11
44444444444448LIM domain
111216Matrixin
24264243452442Regulator of chromosome condensation (RCC1) repeat
22222222222224Ribosomal protein S13/S18
32242222233229chorismate binding enzyme
3333333333333660s Acidic ribosomal protein
44444445554552Prenyltransferase and squalene oxidase repeat
64656554454559Protein kinase C terminal domain
11111111111112Single-strand binding protein family
11Type II/IV secretion system protein
11111111111112S-adenosylmethionine synthetase, N-terminal domain
988989897898100Bromodomain
129611911111111131111126Acyl-CoA dehydrogenase, C-terminal domain
141314131413131313131313159Ubiquitin carboxyl-terminal hydrolase
1111111111111Ribosomal protein L36
42242555553547Ribonuclease T2 family
33333333323335HSF-type DNA-binding
22232323332229SRP54-type protein, GTPase domain
11111111111112Urease alpha-subunit, N-terminal domain
10798889109788101Serine carboxypeptidase
88888888888896Phosphatidylinositol 3- and 4-kinase
12121222221220Transketolase, thiamine diphosphate binding domain
102332443355347Glycosyl hydrolases family 11
43343544444446Inositol monophosphatase family
44444444444448Glutaredoxin
52524222222232Isocitrate lyase family
22222222222224Serine hydroxymethyltransferase
22414333332333Iron-containing alcohol dehydrogenase
22222222222224Ribosomal protein L10
42444545535550KOW motif
111111111110Ribosomal protein L34
1111116Ribosomal protein L33
33333333333336RF-1 domain
22324222222227Sodium:solute symporter family
11111111111112Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
11111111111112IMP dehydrogenase / GMP reductase domain
1111111111111Glucose-6-phosphate dehydrogenase, NAD binding domain
76666666676775Protein phosphatase 2C
22222222222224Nucleotidyl transferase
63333565544552Carbonic anhydrase
11121122321219Phosphoribulokinase / Uridine kinase family
78555666675672Fatty acid desaturase
66666666666672MutS domain V
11121222211117Delta-aminolevulinic acid dehydratase
54434444445449Arginase family
66666676666673MCM P-loop domain
23232333333333Squalene/phytoene synthase
910101010910101091410121FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
794743514754636378595762703AMP-binding enzyme
53344544444448G-protein alpha subunit
19881089810109810117HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1071089111212111089117His Kinase A (phospho-acceptor) domain
33333333333336Armadillo/beta-catenin-like repeat
321126132613131615121018205Tetratricopeptide repeat
33424222232231Ion transport protein
11111111211113DNA gyrase/topoisomerase IV, subunit A
1079611766668688BRCA1 C Terminus (BRCT) domain
65636433345351Glycosyl transferases group 1
42324222223331Glycosyl transferase family 2
13111111121115SAM domain (Sterile alpha motif)
11111111111112linker histone H1 and H5 family
11111111111112Ribosomal protein L7/L12 C-terminal domain
75171566746762Pectate lyase
43323245532440ribonuclease
11111111111112Urease, gamma subunit
44444444444448CoA-ligase
603720423157586676666271646Phosphopantetheine attachment site
33342333333336Formyl transferase
910911912111212121212131Metallopeptidase family M24
13315316222221263Leucine Rich Repeat
571038115110141113151213