PFAM Domains • Lizonia empirigonia CBS 542.76 v1.0
Annotations/GenomesAplpr1Aulhe2Erebi1Lizem1Phycit1Totfu1Tryvi1TotalAnnotation Description
PFAMs
8,1987,7867,2168,4157,2838,5218,54055,959
1127 transmembrane receptor (rhodopsin family)
52444340415465339ATPase family associated with various cellular activities (AAA)
42373539294729258ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
1414141414141498Elongation factor Tu GTP binding domain
10911121010870Helix-loop-helix DNA-binding domain
223336221Hsp20/alpha crystallin family
777779751Hsp70 protein
8999910862KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
23232324222422161SH3 domain
1010101010101070Actin
1025054503551129471Ankyrin repeat
11214220PAN domain
777878751ADP-ribosylation factor family
121091012211589Eukaryotic aspartyl protease
443444427Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
112Cytochrome b/b6/petB
11112118Cytochrome c
1211229Double-stranded RNA binding motif
20172018192116131EF hand
11111164Fe-4S binding domain
122222213Fibronectin type III domain
1111116Globin
1414121312102095Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
658968951Homeodomain
224323218lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
11Lectin C-type domain
434445529Myosin head (motor domain)
906061896864127559Cytochrome P450
10611010613697129119803Protein kinase domain
13141715111920109Pyridine nucleotide-disulphide oxidoreductase
23232324223123169Ras family
1823924183113136Response regulator receiver domain
433146526RNase H
66636260636162437RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
223323318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
514967152480Subtilase family
56382967514250333Sugar (and other) transporter
91091210131073Thioredoxin
12121119Trypsin
444444428Tubulin/FtsZ family, GTPase domain
436445430von Willebrand factor type A domain
58515556516250383Zinc finger, C2H2 type
53454351435942336Zinc finger, C3HC4 type (RING finger)
674355838Zinc knuckle
222222214Protein-tyrosine phosphatase
1221299410484137143813short chain dehydrogenase
56574155476773396Zinc-binding dehydrogenase
555556536Thiolase, N-terminal domain
2076168941107Beta-ketoacyl synthase, N-terminal domain
6536544332Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
314Cytochrome C and Quinol oxidase polypeptide I
213Cytochrome C oxidase subunit II, periplasmic domain
888888856Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
213ATP synthase A chain
223322519Glutamine synthetase, catalytic domain
211221211Triosephosphate isomerase
1413141513151296E1-E2 ATPase
88109811862Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
485534736Alpha amylase, catalytic domain
223122214Phorbol esters/diacylglycerol binding domain (C1 domain)
768677849Bacterial transferase hexapeptide (six repeats)
343334424tRNA synthetases class I (I, L, M and V)
777786648Cyclin, N-terminal domain
24351922243026180Carboxylesterase family
444454429DNA polymerase family B
545446533ATP synthase subunit C
7647412242Peroxidase
104712621767Beta-lactamase
342334322C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
23302126232929181Calcineurin-like phosphoesterase
11104159121475Cellulase (glycosyl hydrolase family 5)
777777850tRNA synthetases class II (D, K and N)
35403742384038270Mitochondrial carrier protein
111115recA bacterial DNA recombination protein
20141315141420110Aminotransferase class I and II
9891089861Phosphoribosyl transferase domain
1011101310121177Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1113Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
99121311111075C2 domain
18181820181717126PH domain
106101088759bZIP transcription factor
19171820132122130Aldehyde dehydrogenase family
159137118153120124162973Fungal Zn(2)-Cys(6) binuclear cluster domain
20212122192021144Cytochrome b5-like Heme/Steroid binding domain
343413523Oxidoreductase molybdopterin binding domain
1513111512141090Oxidoreductase NAD-binding domain
26272224252728179SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
22252523222423164Ubiquitin-conjugating enzyme
765766845Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
654756235Chitin recognition protein
323633424Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
154336325Cupin
222222214Annexin
211127Eukaryotic-type carbonic anhydrase
112Chalcone and stilbene synthases, N-terminal domain
3334333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
474736435Catalase
11111117Disintegrin
123UDP-glucoronosyl and UDP-glucosyl transferase
755787544Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
7556561044Thiamine pyrophosphate enzyme, central domain
433343424Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
21111118Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
111126Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1010101110111072Kinesin motor domain
29262429263626196DnaJ domain
1514141414141499Proteasome subunit
10929713858Major intrinsic protein
11111117ATP synthase
511442118Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
11112118Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
911131112141383Ubiquitin family
344545429Cofilin/tropomyosin-type actin-binding protein
22232221514-3-3 protein
357645333Alkaline phosphatase
222913221Zinc carboxypeptidase
21271627203029170Aldo/keto reductase family
16121022131017100Myb-like DNA-binding domain
444445530Forkhead domain
41221111Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
322322216Ribosomal protein S14p/S29e
454546432FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
222121111
7751066748Flavodoxin
11111117Calreticulin family
7391039647Common central domain of tyrosinase
777869751Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41414740394037285DEAD/DEAH box helicase
75838175718277544Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
221222213Ribosomal protein L23
11112118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112221211Ribosomal protein L5
766655742Pyridoxal-dependent decarboxylase conserved domain
322222316Citrate synthase, C-terminal domain
555656537GHMP kinases N terminal domain
667777747Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1211912119973Pyridoxal-phosphate dependent enzyme
14151614131815105NUDIX domain
456646435pfkB family carbohydrate kinase
967591147Glycosyl hydrolases family 28
11114Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1213101612141592Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
112Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
454445531Calponin homology (CH) domain
544465634Glutamine amidotransferases class-II
222232215Ribosomal protein S15
11111218Thaumatin family
11121118Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222222315SRF-type transcription factor (DNA-binding and dimerisation domain)
967585747GATA zinc finger
37322038314033231Amino acid permease
353636430Prolyl oligopeptidase family
211322112Ribosomal protein L30p/L7e
10116141091070Histidine phosphatase superfamily (branch 2)
21111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
545444430Aconitase family (aconitate hydratase)
211612417Glycosyl hydrolase family 10
544544531Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11114Tetraspanin family
122112211Ribosomal protein S10p/S20e
542457633Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222232215Ribosomal protein L6
433733427Polyprenyl synthetase
443553428Hexokinase
104121159758Dynamin family
131112110Transcription factor TFIID (or TATA-binding protein, TBP)
434646330Rieske [2Fe-2S] domain
11114Phytochrome region
448Proton-conducting membrane transporter
889989960Biotin-requiring enzyme
11111117Phosphofructokinase
122211211Ribosomal protein S17
111611112Hydroxymethylglutaryl-coenzyme A reductase
343334323FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
8111411815976Enoyl-CoA hydratase/isomerase
222322215Ribosomal protein S9/S16
322222215Transcription factor TFIIB repeat
787679852Cytidine and deoxycytidylate deaminase zinc-binding region
11121118Molybdopterin oxidoreductase
644455735Chromo (CHRromatin Organisation MOdifier) domain
222323216Phosphatidylinositol-specific phospholipase C, Y domain
322334219Phosphatidylinositol-specific phospholipase C, X domain
888786853D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222113Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
2222222146-phosphogluconate dehydrogenase, C-terminal domain
9158714131985Multicopper oxidase
11Granulin
10109129121072WW domain
11111117Ribosomal RNA adenine dimethylase
1123411Yeast PIR protein repeat
107111128115104109107781WD domain, G-beta repeat
455456534Heavy-metal-associated domain
433533324Adenylate kinase
322222215Phosphoglucomutase/phosphomannomutase, C-terminal domain
411211212Ribosomal protein S8
11111229Ribosomal protein S11
444644430LIM domain
112Matrixin
23223315Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222422216chorismate binding enzyme
33343342360s Acidic ribosomal protein
444444428Prenyltransferase and squalene oxidase repeat
556565638Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
776779952Bromodomain
712171512131187Acyl-CoA dehydrogenase, C-terminal domain
15141414161715105Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
221234317Ribonuclease T2 family
433333322HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
9125911131675Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
222321214Transketolase, thiamine diphosphate binding domain
113510Glycosyl hydrolases family 11
444445328Inositol monophosphatase family
444445429Glutaredoxin
634332425Isocitrate lyase family
222222214Serine hydroxymethyltransferase
452442425Iron-containing alcohol dehydrogenase
212221212Ribosomal protein L10
363341424KOW motif
11111117Ribosomal protein L34
223132114RF-1 domain
353355226Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
565766540Protein phosphatase 2C
332323319Nucleotidyl transferase
134317322Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
545765638Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
544444530Arginase family
666666642MCM P-loop domain
221222213Squalene/phytoene synthase
8969911961FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
41294342384948290AMP-binding enzyme
433534830G-protein alpha subunit
71079810960HMG (high mobility group) box
22NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
1418520162711111His Kinase A (phospho-acceptor) domain
332332218Armadillo/beta-catenin-like repeat
20222446222530189Tetratricopeptide repeat
444153324Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
1011101211141179BRCA1 C Terminus (BRCT) domain
677557744Glycosyl transferases group 1
476559339Glycosyl transferase family 2
141335219SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
614822124Pectate lyase
42111211ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
256920131634123Phosphopantetheine attachment site
322324218Formyl transferase
7891088858Metallopeptidase family M24
14131314151615100Leucine Rich Repeat
33423035274347257alpha/beta hydrolase fold
333343322RNA polymerase Rpb2, domain 6
333333422PB1 domain
222222214Staphylococcal nuclease homologue
91091310101071Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
353333525Zinc finger, ZZ type
212322214HRDC domain
9101091010967CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
333232420S1 RNA binding domain
11111117HIUase/Transthyretin family
544664433AhpC/TSA family
444444529tRNA synthetases class I (W and Y)
1112117UvrD/REP helicase N-terminal domain
556556436Rhodanese-like domain
222222214Universal stress protein family
34352935223934228Acetyltransferase (GNAT) family
21111118SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
887889856tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
21112119Glycosyl transferase family, a/b domain
11112219PDZ domain
643537735Class II Aldolase and Adducin N-terminal domain
344443426Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
545555534Fes/CIP4, and EFC/F-BAR homology domain
535556635IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
456656537Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
333333321GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
444434427RasGEF N-terminal motif
998889859RhoGAP domain
565666539RhoGEF domain
223343320SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
443434325Gelsolin repeat
107991010964UBA/TS-N domain
17201516161916119PHD-finger
11Filamin/ABP280 repeat
11111117GGL domain
666565640HECT-domain (ubiquitin-transferase)
222323216Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
667647541Ribonuclease III domain
222222113Region in Clathrin and VPS
222222214RanBP1 domain
222222214PPIC-type PPIASE domain
223121112Zn-finger in Ran binding protein and others
20141616161815115Zinc finger C-x8-C-x5-C-x3-H type (and similar)
223213114Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
82573558468854420F-box domain
11121118Elongation factor 1 gamma, conserved domain
233222216Calpain family cysteine protease
222222315Copper fist DNA binding domain
555555535CRAL/TRIO domain
2413914283611135BTB/POZ domain
112Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
344444427Voltage gated chloride channel
122111311Caspase domain
11119127111172GDSL-like Lipase/Acylhydrolase
11121118Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
112NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
19171818132614125ABC transporter transmembrane region
134Integrase core domain
664654536FAD binding domain
1113967542Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222113ribosomal L5P family C-terminus
666565640Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
666666642Elongation factor G C-terminus
444445530HMGL-like
444444428DnaJ central domain
212117Starch binding domain
222232215Ribosomal protein L1p/L10e family
668868547Cation transporting ATPase, C-terminus
878978653Cation transporter/ATPase, N-terminus
21111118dUTPase
545444430Aconitase C-terminal domain
343333322Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
206513883999Acyl transferase domain
11111117Urease beta subunit
533554631Dihydrodipicolinate synthetase family
32313332303628222haloacid dehalogenase-like hydrolase
321632118Glycosyl hydrolases family 2
611814512864Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
1111127Acylphosphatase
11131119Adenylosuccinate synthetase
2112219Asparaginase, N-terminal
321113314Peptidase S24-like
11111117Inorganic pyrophosphatase
8105111414971Glycosyl hydrolases family 16
431322217Glycosyl hydrolases family 15
1375668651NADH:flavin oxidoreductase / NADH oxidase family
3212433183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
221321314Glycosyl hydrolase family 20, catalytic domain
353745330HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
298923131026118GMC oxidoreductase
322222417Asparagine synthase
9811524Fungal cellulose binding domain
555655536Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
122115315Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
333333321tRNA synthetases class I (E and Q), catalytic domain
131211110tRNA synthetases class I (R)
444434528XPG N-terminal domain
121010118121578Metallo-beta-lactamase superfamily
11114F5/8 type C domain
232223216Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
856538439Dioxygenase
333332320CNH domain
222122213Diacylglycerol kinase catalytic domain
768878751Dual specificity phosphatase, catalytic domain
333322218P21-Rho-binding domain
1312111312121285PX domain
232333218Ras association (RalGDS/AF-6) domain
555655637UBX domain
444444327VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
975898854Carbon-nitrogen hydrolase
211123212N-acetyltransferase
11111117Prephenate dehydratase
11PKD domain
534543327Syntaxin
554555534Pumilio-family RNA binding repeat
666766643Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
444444428impB/mucB/samB family
11PPE family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
211312212Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
545455432Histone deacetylase domain
553947134POT family
11111117PWWP domain
14201221122413116SET domain
6879581053Isochorismatase family