PFAM Domains • Pycnoporus cinnabarinus CIRM-BRFM 50 v1.0
Annotations/GenomesPycci1Pyccin1Pycco1Pycco1662_1Pycpun1Pycsa1TotalAnnotation Description
PFAMs
7,4569,1397,9347,9068,6848,03249,151
413942423641241ATPase family associated with various cellular activities (AAA)
363739383539224ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
15161515151591Elongation factor Tu GTP binding domain
8101111111162Helix-loop-helix DNA-binding domain
911109101059Hsp20/alpha crystallin family
77777742Hsp70 protein
86877743KH domain
11114SH2 domain
231325221727127SH3 domain
10101010101060Actin
2542626425110Ankyrin repeat
67777842ADP-ribosylation factor family
424241403847250Eukaryotic aspartyl protease
33333318Cyclic nucleotide-binding domain
1111116Cytochrome c
69787744Double-stranded RNA binding motif
19191911977EF hand
211264Fe-4S binding domain
211116Fibronectin type III domain
1111116Globin
1472020102091Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
799991053Homeodomain
1113Laminin EGF domain
22222212lactate/malate dehydrogenase, NAD binding domain
55555530Myosin head (motor domain)
104104124127100129688Cytochrome P450
138172162166149184971Protein kinase domain
1610161791684Pyridine nucleotide-disulphide oxidoreductase
242625242624149Ras family
89999953Response regulator receiver domain
3762823236132RNase H
625667685969381RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
7474Reverse transcriptase (RNA-dependent DNA polymerase)
1111116Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
7235416459Subtilase family
313930313730198Sugar (and other) transporter
89889850Thioredoxin
55555530Tubulin/FtsZ family, GTPase domain
12328von Willebrand factor type A domain
362055581456239Zinc finger, C2H2 type
38759631067244Zinc finger, C3HC4 type (RING finger)
5782112619123Zinc knuckle
22223314Protein-tyrosine phosphatase
696583885689450short chain dehydrogenase
434152523649273Zinc-binding dehydrogenase
45445426Thiolase, N-terminal domain
24223215Beta-ketoacyl synthase, N-terminal domain
313312132Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
78888847Glutamine amidotransferase class-I
10101010111061TCP-1/cpn60 chaperonin family
43333319Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
12161111171077E1-E2 ATPase
16161616151695Core histone H2A/H2B/H3/H4
11114Copper binding proteins, plastocyanin/azurin family
66666636Alpha amylase, catalytic domain
46665633Phorbol esters/diacylglycerol binding domain (C1 domain)
55554529Bacterial transferase hexapeptide (six repeats)
35334321tRNA synthetases class I (I, L, M and V)
6111011121060Cyclin, N-terminal domain
17151716141796Carboxylesterase family
44444424DNA polymerase family B
33333419ATP synthase subunit C
11101212101267Peroxidase
44445526Beta-lactamase
44444424C-5 cytosine-specific DNA methylase
221923242124133Calcineurin-like phosphoesterase
13141315151282Cellulase (glycosyl hydrolase family 5)
66666636tRNA synthetases class II (D, K and N)
353937383738224Mitochondrial carrier protein
11recA bacterial DNA recombination protein
211920191720116Aminotransferase class I and II
63774734Phosphoribosyl transferase domain
13131414141482Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
111115Chaperonin 10 Kd subunit
13111313121476C2 domain
17102222821100PH domain
38446429bZIP transcription factor
181719191617106Aldehyde dehydrogenase family
296469756164362Fungal Zn(2)-Cys(6) binuclear cluster domain
242223222122134Cytochrome b5-like Heme/Steroid binding domain
55442424Oxidoreductase molybdopterin binding domain
1311131371370Oxidoreductase NAD-binding domain
202323232123133SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
192022212020122Ubiquitin-conjugating enzyme
55555530Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22222212Hsp90 protein
23222213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111115Dihydrofolate reductase
12222211Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
66664634Cupin
333333182-oxoacid dehydrogenases acyltransferase (catalytic domain)
34333319Catalase
1111116Disintegrin
131619251221106UDP-glucoronosyl and UDP-glucosyl transferase
68555534Aminotransferase class-III
33222214Ribosomal protein S19
1111116DNA gyrase B
44445425Thiamine pyrophosphate enzyme, central domain
33333318Lyase
1111116Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
21122210Indole-3-glycerol phosphate synthase
1111116Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
99989852Kinesin motor domain
253030313131178DnaJ domain
14141414151485Proteasome subunit
44444424Major intrinsic protein
1111116ATP synthase
22222212Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
22222212Ribosomal protein L22p/L17e
2222210Ribosomal protein L14p/L23e
14171716171899Ubiquitin family
55555530Cofilin/tropomyosin-type actin-binding protein
2222221214-3-3 protein
22228Alkaline phosphatase
1111116Zinc carboxypeptidase
494856583959309Aldo/keto reductase family
107121271159Myb-like DNA-binding domain
45555529Forkhead domain
1111116Glycosyl hydrolases family 32 N-terminal domain
1211218Ribosomal protein L16p/L10e
12222211Ribosomal protein S14p/S29e
33334319FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
21115
66654532Flavodoxin
1111116Calreticulin family
12222110Common central domain of tyrosinase
67778641Aminotransferase class-V
222421830Ribonucleotide reductase, small chain
488248504850326DEAD/DEAH box helicase
8810186857390523Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22224113Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
44543424Pyridoxal-dependent decarboxylase conserved domain
34334320Citrate synthase, C-terminal domain
55655531GHMP kinases N terminal domain
68776741Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
999108954Pyridoxal-phosphate dependent enzyme
14161515151691NUDIX domain
33334319pfkB family carbohydrate kinase
67777741Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
78888847Histidine phosphatase superfamily (branch 1)
1111127Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
44444424Calponin homology (CH) domain
43552524Glutamine amidotransferases class-II
22222212Ribosomal protein S15
45665531Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1113129Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
12222211SRF-type transcription factor (DNA-binding and dimerisation domain)
810101010856GATA zinc finger
188201971991Amino acid permease
44445425Prolyl oligopeptidase family
1211229Ribosomal protein L30p/L7e
13121414111781Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444424Aconitase family (aconitate hydratase)
65666635Glycosyl hydrolase family 10
111115Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
22221211Nucleoside diphosphate kinase
13115213Tetraspanin family
22222212Ribosomal protein S10p/S20e
54534425Arrestin (or S-antigen), N-terminal domain
111115Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
2111117SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
43443321Polyprenyl synthetase
21223212Hexokinase
510978948Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
43343421Rieske [2Fe-2S] domain
112Phytochrome region
112Proton-conducting membrane transporter
710998851Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
33443421FGGY family of carbohydrate kinases, N-terminal domain
87897746Enoyl-CoA hydratase/isomerase
32222213Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
68887845Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
33612106774Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1112218Phosphatidylinositol-specific phospholipase C, X domain
66666636D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33333823Malic enzyme, N-terminal domain
222222126-phosphogluconate dehydrogenase, C-terminal domain
67776740Multicopper oxidase
58998847WW domain
12322212Ribosomal RNA adenine dimethylase
120134147145124167837WD domain, G-beta repeat
44545426Heavy-metal-associated domain
33333318Adenylate kinase
23223214Phosphoglucomutase/phosphomannomutase, C-terminal domain
1211218Ribosomal protein S8
12222211Ribosomal protein S11
56656634LIM domain
45446528Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22222212chorismate binding enzyme
3233321660s Acidic ribosomal protein
1113ATP synthase B/B' CF(0)
44444424Prenyltransferase and squalene oxidase repeat
75775738Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
10101011101061Bromodomain
99101191159Acyl-CoA dehydrogenase, C-terminal domain
15131616161490Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
22222212Ribonuclease T2 family
55565531HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
201919191420111Serine carboxypeptidase
78888847Phosphatidylinositol 3- and 4-kinase
22222212Transketolase, thiamine diphosphate binding domain
112WHEP-TRS domain
22222212Inositol monophosphatase family
44445425Glutaredoxin
32442419Isocitrate lyase family
1111116Serine hydroxymethyltransferase
44334321Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
34554425KOW motif
1111116Ribosomal protein L34
11114Negative factor, (F-Protein) or Nef
11Ribosomal protein L33
24334319RF-1 domain
22222212Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
779981050Protein phosphatase 2C
23332316Nucleotidyl transferase
22223112Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
11111010101062Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
55553528Arginase family
66666636MCM P-loop domain
1211218Squalene/phytoene synthase
1012121291267FHA domain
333437363837215AMP-binding enzyme
14141414131483G-protein alpha subunit
16151717171799HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
65666635His Kinase A (phospho-acceptor) domain
33333419Armadillo/beta-catenin-like repeat
261230301628142Tetratricopeptide repeat
23333317Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
107131171361BRCA1 C Terminus (BRCT) domain
64666634Glycosyl transferases group 1
43443422Glycosyl transferase family 2
1111116SAM domain (Sterile alpha motif)
32323316linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1111116ribonuclease
1111116Urease, gamma subunit
33333318CoA-ligase
9111011101061Phosphopantetheine attachment site
22222212Formyl transferase
11121111111167Metallopeptidase family M24
154151731569Leucine Rich Repeat
441348531149218alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
33555526PB1 domain
22222212Staphylococcal nuclease homologue
10121010141066Rab-GTPase-TBC domain
1111116Tudor domain
22222212WH1 domain
33333217Zinc finger, ZZ type
11114HRDC domain
77996846CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
111115Clp protease
34344321S1 RNA binding domain
1111116HIUase/Transthyretin family
54454527AhpC/TSA family
44445425tRNA synthetases class I (W and Y)
1211117UvrD/REP helicase N-terminal domain
38447430Rhodanese-like domain
12222211Universal stress protein family
241833322233162Acetyltransferase (GNAT) family
111115SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
75665635tRNA synthetase class II core domain (G, H, P, S and T)
44Phage integrase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
34211112Glycosyl transferase family, a/b domain
1111116Class II Aldolase and Adducin N-terminal domain
34335321Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
45554528Fes/CIP4, and EFC/F-BAR homology domain
42332418IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
21331313Phospholipase D Active site motif
13113110Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
56556532RasGEF domain
56665634RasGEF N-terminal motif
12131313131377RhoGAP domain
13151312141279RhoGEF domain
34444423SPRY domain
33333318RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
53333320Gelsolin repeat
869106948UBA/TS-N domain
151719181518102PHD-finger
12222211GGL domain
44444424HECT-domain (ubiquitin-transferase)
1111116Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
44663528Ribonuclease III domain
24224216Region in Clathrin and VPS
44444424RanBP1 domain
12221210PPIC-type PPIASE domain
32442520Zn-finger in Ran binding protein and others
211426271226126Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111115B-box zinc finger
22331314Poly(ADP-ribose) polymerase catalytic domain
22221211Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
682111210924123457F-box domain
1111116Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
12222110Copper fist DNA binding domain
76777741CRAL/TRIO domain
123319192918130BTB/POZ domain
31331314Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33333318Voltage gated chloride channel
56667838Caspase domain
57876740GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
181818181618106ABC transporter transmembrane region
9393Integrase core domain
55554529FAD binding domain
21221210Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
2111117HAMP domain
22222212ribosomal L5P family C-terminus
66776638Insulinase (Peptidase family M16)
55555530Dehydrogenase E1 component
1111116Lumazine binding domain
77776741Elongation factor G C-terminus
56554530HMGL-like
44444424DnaJ central domain
12222211Starch binding domain
23223315Ribosomal protein L1p/L10e family
56447430Cation transporting ATPase, C-terminus
67557535Cation transporter/ATPase, N-terminus
1111116dUTPase
44444424Aconitase C-terminal domain
33333318Amino acid kinase family
11114N-(5'phosphoribosyl)anthranilate (PRA) isomerase
26233218Acyl transferase domain
1111116Urease beta subunit
33333318Dihydrodipicolinate synthetase family
271327271526135haloacid dehalogenase-like hydrolase
1211229Glycosyl hydrolases family 2
11111111121268Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
111115Acylphosphatase
11211410Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
23222213Peptidase S24-like
1111116Inorganic pyrophosphatase
8146612551Glycosyl hydrolases family 16
22223415Glycosyl hydrolases family 15
99111161056NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
55555530Glycosyl hydrolase family 20, catalytic domain
56565532HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
222123243223145GMC oxidoreductase
22222212Asparagine synthase
192221212021124Fungal cellulose binding domain
66666636Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
33223316Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
57845534XPG N-terminal domain
12101515101476Metallo-beta-lactamase superfamily
11114F5/8 type C domain
44444424Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Glycosyl hydrolase family 9
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
32333317RNB domain
33333318Dioxygenase
47446429CNH domain
12222211Diacylglycerol kinase catalytic domain
11131312131375Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
43333319P21-Rho-binding domain
11151414141381PX domain
33334319Ras association (RalGDS/AF-6) domain
33444422UBX domain
55555530VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
44444424Carbon-nitrogen hydrolase
111115Prephenate dehydratase
54654630Syntaxin
55554529Pumilio-family RNA binding repeat
47777638Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
1111116ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
33333419impB/mucB/samB family
11114
1111116Ribosomal L15
13113110Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
111216Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
33333318Glycosyl hydrolase family 7
12222211RNA pseudouridylate synthase
68887946Histone deacetylase domain
1111116POT family
22222212PWWP domain
12181715181494SET domain
25555527Isochorismatase family
22332315Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
97976745XPG I-region
1111116Acetokinase family
1111116DNA photolyase
1111116Cation-independent mannose-6-phosphate receptor repeat
11114Nitroreductase family
1111116Cytosol aminopeptidase family, catalytic domain
11Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
33333318Acyl CoA binding protein
55555530Cullin family
1111116Elongation factor TS
33433319FAD binding domain
65883939O-methyltransferase domain
45435324EamA-like transporter family
22228
57778741ThiF family
1111116Ribosomal family S4e
1111116Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22222212Ammonium Transporter Family
44444424Sulfate permease family
1121229MATH domain
22222313Dehydratase family
33323317Transaldolase/Fructose-6-phosphate aldolase
33333419Mechanosensitive ion channel
1211218GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
54444425Adaptor complexes medium subunit family
79999952Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
88888848Glycosyl hydrolase family 3 N terminal domain
111115Ribosomal protein L44
112Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
33444422Synaptobrevin
1111116GMP synthase C terminal domain
11LAGLIDADG endonuclease
33333217Adenosine/AMP deaminase
57664634Oxidoreductase FAD-binding domain
24223215Thioesterase domain
22222212Histidine biosynthesis protein
32333317Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
22222212Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
66665635Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44444424Initiation factor 2 subunit family
23128PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
3111118Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
22222212Gamma-glutamyltranspeptidase
112Ribosomal L40e family
1111116GrpE
33333318TatD related DNase
22222212Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
47767536Dynamin central region
1111156-O-methylguanine DNA methyltransferase, DNA binding domain
33332317Bacteriorhodopsin-like protein
33332317Carboxyl transferase domain
35665530UbiA prenyltransferase family
54444425Endoribonuclease L-PSP
3</