PFAM Domains • Schizophyllum commune Loenen D v1.0
Annotations/GenomesAgabi_varbisH97_2Copci1Fishe1PleosPC15_2Schco2Schco_LoeD_1Schco_TatD_1TotalAnnotation Description
PFAMs
6,9507,6787,1057,9728,4928,2888,42254,907
117 transmembrane receptor (rhodopsin family)
38434147434744303ATPase family associated with various cellular activities (AAA)
36464239464546300ABC transporter
446444430ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
16151715151515108Elongation factor Tu GTP binding domain
910111112121277Helix-loop-helix DNA-binding domain
475799950Hsp20/alpha crystallin family
78101177757Hsp70 protein
988898858KH domain
1311118SH2 domain
30312428262726192SH3 domain
1112111111111178Actin
18932622455958321Ankyrin repeat
587877749ADP-ribosylation factor family
15132024292424149Eukaryotic aspartyl protease
333333321Cyclic nucleotide-binding domain
11211118Cytochrome c
6610612121264Double-stranded RNA binding motif
19191519201820130EF hand
121111184Fe-4S binding domain
11111117Fibronectin type III domain
1113Globin
27148814131498Glutathione S-transferase, C-terminal domain
232211112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
213Hemopexin
71071011111167Homeodomain
12115Laminin EGF domain
222322215lactate/malate dehydrogenase, NAD binding domain
555556637Myosin head (motor domain)
11613491143114110114822Cytochrome P450
1361361671551611521541,061Protein kinase domain
1317142011121198Pyridine nucleotide-disulphide oxidoreductase
25322726262727190Ras family
6881012121268Response regulator receiver domain
7211931042RNase H
60647067707069470RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
1113Copper/zinc superoxide dismutase (SODC)
122233316Iron/manganese superoxide dismutases, alpha-hairpin domain
7125933342Subtilase family
27204127414343242Sugar (and other) transporter
12981513121382Thioredoxin
556655537Tubulin/FtsZ family, GTPase domain
333433322von Willebrand factor type A domain
3760395798100101492Zinc finger, C2H2 type
43484859665963386Zinc finger, C3HC4 type (RING finger)
83211844241824232Zinc knuckle
222222214Protein-tyrosine phosphatase
54496880110116118595short chain dehydrogenase
27293641474645271Zinc-binding dehydrogenase
644444430Thiolase, N-terminal domain
323232217Beta-ketoacyl synthase, N-terminal domain
3333333212Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
987788855Glutamine amidotransferase class-I
1010151010101075TCP-1/cpn60 chaperonin family
11ATP synthase A chain
443333323Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
711101399968E1-E2 ATPase
16161517221718121Core histone H2A/H2B/H3/H4
21222211Copper binding proteins, plastocyanin/azurin family
6817912121276Alpha amylase, catalytic domain
564366636Phorbol esters/diacylglycerol binding domain (C1 domain)
254544428Bacterial transferase hexapeptide (six repeats)
333234523tRNA synthetases class I (I, L, M and V)
10121791411982Cyclin, N-terminal domain
19192026232222151Carboxylesterase family
542443426DNA polymerase family B
333333321ATP synthase subunit C
5411022226Peroxidase
321334420Beta-lactamase
444556634C-5 cytosine-specific DNA methylase
22312527242424177Calcineurin-like phosphoesterase
81171377760Cellulase (glycosyl hydrolase family 5)
555566638tRNA synthetases class II (D, K and N)
34363634363937252Mitochondrial carrier protein
13161213161717104Aminotransferase class I and II
566766642Phosphoribosyl transferase domain
1314151014141393Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11211118Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
21111118Chaperonin 10 Kd subunit
14171218191717114C2 domain
20192018201818133PH domain
566666742bZIP transcription factor
24121219161817118Aldehyde dehydrogenase family
50425653887683448Fungal Zn(2)-Cys(6) binuclear cluster domain
20242122242524160Cytochrome b5-like Heme/Steroid binding domain
1221118Oxidoreductase molybdopterin binding domain
61058118755Oxidoreductase NAD-binding domain
19262026222223158SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
18232120212121145Ubiquitin-conjugating enzyme
656555537Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222233216Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
423555529Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
21224415Cupin
1315Annexin
3344333232-oxoacid dehydrogenases acyltransferase (catalytic domain)
342222217Catalase
11111117Disintegrin
61119UDP-glucoronosyl and UDP-glucosyl transferase
558554537Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
343544427Thiamine pyrophosphate enzyme, central domain
333333321Lyase
223122214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
12112119Indole-3-glycerol phosphate synthase
221222213Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
9810910111168Kinesin motor domain
31322729273127204DnaJ domain
1414151414141499Proteasome subunit
421733323Major intrinsic protein
11111117ATP synthase
121333316Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11114Profilin
21111118Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
13171616131314102Ubiquitin family
555575537Cofilin/tropomyosin-type actin-binding protein
12322221414-3-3 protein
321533320Alkaline phosphatase
112122211Zinc carboxypeptidase
21224542605657303Aldo/keto reductase family
1313161511111190Myb-like DNA-binding domain
555589845Forkhead domain
12115Glycosyl hydrolases family 32 N-terminal domain
11121118Ribosomal protein L16p/L10e
122222213Ribosomal protein S14p/S29e
534855636FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
221222213
766677746Flavodoxin
11111117Calreticulin family
6191411133Common central domain of tyrosinase
7761199958Aminotransferase class-V
224233319Ribonucleotide reductase, small chain
47515555676255392DEAD/DEAH box helicase
77928492989292627Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
454576738Pyridoxal-dependent decarboxylase conserved domain
354333324Citrate synthase, C-terminal domain
446554533GHMP kinases N terminal domain
765655539Biotin carboxylase, N-terminal domain
11211118Tryptophan synthase alpha chain
777787851Pyridoxal-phosphate dependent enzyme
12171715141414103NUDIX domain
345566635pfkB family carbohydrate kinase
636633330Glycosyl hydrolases family 28
222232215Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
9781099961Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
22Lipoxygenase
446444430ATP synthase alpha/beta chain, C terminal domain
445455431Calponin homology (CH) domain
544555533Glutamine amidotransferases class-II
122212212Ribosomal protein S15
355311111149Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222122213Ribosomal protein S2
212244419SRF-type transcription factor (DNA-binding and dimerisation domain)
111115912131384GATA zinc finger
15132420211821132Amino acid permease
11Bacterial regulatory proteins, crp family
555877744Prolyl oligopeptidase family
11311119Ribosomal protein L30p/L7e
8581399961Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
544444429Aconitase family (aconitate hydratase)
262355528Glycosyl hydrolase family 10
332122215Glycosyl hydrolases family 17
122222213Ribosomal protein S5, N-terminal domain
221222112Nucleoside diphosphate kinase
231311112Tetraspanin family
22Galactoside-binding lectin
222222214Ribosomal protein S10p/S20e
132454423Arrestin (or S-antigen), N-terminal domain
121112210Phosphoglucose isomerase
11211118Carbohydrate phosphorylase
11131119SecY translocase
1112139Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
343466632Polyprenyl synthetase
222222214Hexokinase
746697948Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
343232219Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
10971499967Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333321FGGY family of carbohydrate kinases, N-terminal domain
77710910959Enoyl-CoA hydratase/isomerase
11Insect cuticle protein
322222215Ribosomal protein S9/S16
232222215Transcription factor TFIIB repeat
456666639Cytidine and deoxycytidylate deaminase zinc-binding region
21111118Molybdopterin oxidoreductase
1071022191816102Chromo (CHRromatin Organisation MOdifier) domain
333344323Phosphatidylinositol-specific phospholipase C, Y domain
334433323Phosphatidylinositol-specific phospholipase C, X domain
666576743D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
323333320Malic enzyme, N-terminal domain
1112222116-phosphogluconate dehydrogenase, C-terminal domain
131761266666Multicopper oxidase
9127799962WW domain
222222214Ribosomal RNA adenine dimethylase
114124116140130118118860WD domain, G-beta repeat
223444423Heavy-metal-associated domain
333333321Adenylate kinase
222212213Phosphoglucomutase/phosphomannomutase, C-terminal domain
12111118Ribosomal protein S8
122211110Ribosomal protein S11
656555638LIM domain
334333322Regulator of chromosome condensation (RCC1) repeat
223222215Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
322222215chorismate binding enzyme
33433332260s Acidic ribosomal protein
445544430Prenyltransferase and squalene oxidase repeat
576677745Protein kinase C terminal domain
1111116Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
1011991191069Bromodomain
8961099960Acyl-CoA dehydrogenase, C-terminal domain
16151416171515108Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
21411110Ribonuclease T2 family
634643430HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11112118Urease alpha-subunit, N-terminal domain
14561210101067Serine carboxypeptidase
989888858Phosphatidylinositol 3- and 4-kinase
222233317Transketolase, thiamine diphosphate binding domain
26211113Glycosyl hydrolases family 11
11111117WHEP-TRS domain
322262219Inositol monophosphatase family
544455532Glutaredoxin
636633330Isocitrate lyase family
21111118Serine hydroxymethyltransferase
323244422Iron-containing alcohol dehydrogenase
211221211Ribosomal protein L10
245554530KOW motif
11111117Ribosomal protein L34
232333319RF-1 domain
131117Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
1111217Glucose-6-phosphate dehydrogenase, NAD binding domain
9812813121274Protein phosphatase 2C
213312113Nucleotidyl transferase
372822226Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
108121213131280Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
224544425Arginase family
666666743MCM P-loop domain
11121118Squalene/phytoene synthase
88111199965FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
30302832313330214AMP-binding enzyme
13161514151516104G-protein alpha subunit
12261717353030167HMG (high mobility group) box
344697841His Kinase A (phospho-acceptor) domain
423243422Armadillo/beta-catenin-like repeat
26292419272424173Tetratricopeptide repeat
434233322Ion transport protein
12111118DNA gyrase/topoisomerase IV, subunit A
810101010101169BRCA1 C Terminus (BRCT) domain
668677747Glycosyl transferases group 1
345345529Glycosyl transferase family 2
32133315SAM domain (Sterile alpha motif)
343333322linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
11844422Pectate lyase
111522214ribonuclease
11112118Urease, gamma subunit
333333321CoA-ligase
467616171369Phosphopantetheine attachment site
222322215Formyl transferase
109111011111173Metallopeptidase family M24
17151517161515110Leucine Rich Repeat
41342547494247285alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
554456635PB1 domain
222222214Staphylococcal nuclease homologue
10910911101170Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
343333322Zinc finger, ZZ type
11114HRDC domain
81110789861CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
465344430S1 RNA binding domain
111115HIUase/Transthyretin family
444676637AhpC/TSA family
345444428tRNA synthetases class I (W and Y)
11211118UvrD/REP helicase N-terminal domain
445444429Rhodanese-like domain
222222214Universal stress protein family
25282827293131199Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
576766643tRNA synthetase class II core domain (G, H, P, S and T)
1111217Phage integrase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
111122210Glycosyl transferase family, a/b domain
121122211Class II Aldolase and Adducin N-terminal domain
223344422Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
653566637Fes/CIP4, and EFC/F-BAR homology domain
443546632IQ calmodulin-binding motif
223222215Phosphoinositide 3-kinase family, accessory domain (PIK domain)
333333321Phospholipase D Active site motif
11121118Regulator of G protein signaling domain
444544429GTPase-activator protein for Ras-like GTPase
6108866650RasGEF domain
797866649RasGEF N-terminal motif
1112111213131385RhoGAP domain
1514141213131394RhoGEF domain
444444428SPRY domain
333433322RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
444333324Gelsolin repeat
9117988759UBA/TS-N domain
15181415161817113PHD-finger
121222212GGL domain
655566639HECT-domain (ubiquitin-transferase)
32321112Helix-hairpin-helix motif
132322215MSP (Major sperm protein) domain
766766644Ribonuclease III domain
222222315Region in Clathrin and VPS
331334421RanBP1 domain
222222214PPIC-type PPIASE domain
142343320Zn-finger in Ran binding protein and others
21222020272332165Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
253310111145Poly(ADP-ribose) polymerase catalytic domain
222112212Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
93197701172542342381,203F-box domain
11111117Elongation factor 1 gamma, conserved domain
192122219Calpain family cysteine protease
122222213Copper fist DNA binding domain
676755541CRAL/TRIO domain
1219812192022112BTB/POZ domain
15172199121185Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333233320Voltage gated chloride channel
9155111191070Caspase domain
81018891155GDSL-like Lipase/Acylhydrolase
111122210Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
15232016242221141ABC transporter transmembrane region
512311Integrase core domain
333433322FAD binding domain
24276526Condensation domain
21121119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
121311110HAMP domain
222222214ribosomal L5P family C-terminus
655555536Insulinase (Peptidase family M16)
4410444434Dehydrogenase E1 component
11111117Lumazine binding domain
778777750Elongation factor G C-terminus
544444429HMGL-like
444344427DnaJ central domain
137311117Starch binding domain
223222215Ribosomal protein L1p/L10e family
363744431Cation transporting ATPase, C-terminus
485855540Cation transporter/ATPase, N-terminus
11111117dUTPase
544444429Aconitase C-terminal domain
344533325Amino acid kinase family
12111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
234342220Acyl transferase domain
11112118Urease beta subunit
222222214Dihydrodipicolinate synthetase family
24242328303029188haloacid dehalogenase-like hydrolase
111233314Glycosyl hydrolases family 2
119131114141486Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11114Acylphosphatase
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
312322215Peptidase S24-like
1111116Inorganic pyrophosphatase
464755536Glycosyl hydrolases family 16
243333321Glycosyl hydrolases family 15
56121320182296NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
423244524Glycosyl hydrolase family 20, catalytic domain
647555537HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34341241242422191GMC oxidoreductase
222222214Asparagine synthase
164431454104Fungal cellulose binding domain
778676647Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
223223317Flavin-binding monooxygenase-like
334333322tRNA synthetases class I (E and Q), catalytic domain
11221119tRNA synthetases class I (R)
555775741XPG N-terminal domain
91081012121273Metallo-beta-lactamase superfamily
11114F5/8 type C domain
444454429Choline/Carnitine o-acyltransferase
11111117Putative esterase
1111116Glycosyl hydrolase family 9
11111117Ferrochelatase
222322215Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
522367732Dioxygenase
444366633CNH domain
222222214Diacylglycerol kinase catalytic domain
1112131212131285Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
444344427P21-Rho-binding domain
16141515131515103PX domain
232323318Ras association (RalGDS/AF-6) domain
444243425UBX domain
445455532VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
534644430Carbon-nitrogen hydrolase
2211118N-acetyltransferase
11111117Prephenate dehydratase
454533327Syntaxin
566755539Pumilio-family RNA binding repeat
566655538Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111229Pterin binding enzyme
11111117ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
333333321impB/mucB/samB family
11211118
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
1641622233Glycosyl hydrolase family 7
222233317RNA pseudouridylate synthase
6611677750Histone deacetylase domain
321244420POT family
122212212PWWP domain
15181819242525144SET domain
354355530Isochorismatase family
121222212Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
595787647XPG I-region
11111