PFAM Domains • Homolaphlyctis polyrhiza JEL142 v1.0
Annotations/GenomesAllma1Antlo1Batde5Ganpr1Hompol1Linpe1Lobtra1Parpar1Phybl2Pirfi3Rhihy1Rhimi_ATCC52814_1Rozal1_1Spipu1Zyghet1TotalAnnotation Description
PFAMs
14,0191,1665,4379,3416,6386,78610,41911,3919,2168,15110,0538,5124,6068,37412,692126,801
41211215357 transmembrane receptor (rhodopsin family)
2137 transmembrane receptor (Secretin family)
954342334042361642257 transmembrane sweet-taste receptor of 3 GCPR
91940563940434248404937384850670ATPase family associated with various cellular activities (AAA)
14510606445846646486213033345547929ABC transporter
11142347912446441388ATP synthase alpha/beta family, nucleotide-binding domain
2151110EGF-like domain
35315161614231921121819161721265Elongation factor Tu GTP binding domain
29965112144358184081252298Helix-loop-helix DNA-binding domain
1224232312758482Hsp20/alpha crystallin family
20369871620123113107817187Hsp70 protein
2039129119111211101351214161KH domain
11Kunitz/Bovine pancreatic trypsin inhibitor domain
123Methyl-accepting chemotaxis protein (MCP) signalling domain
11111117SH2 domain
102451721922273537896050286939794SH3 domain
11u-PAR/Ly-6 domain
181698111414111091191114156Actin
732419816211293726812849675311966Ankyrin repeat
222219128PAN domain
2838898111010129871513159ADP-ribosylation factor family
2436155192133130202932238Eukaryotic aspartyl protease
601415163667107778238260Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
41121111211218Cytochrome c
634131115127136Double-stranded RNA binding motif
734313116213538423427471382EF hand
42211121112184Fe-4S binding domain
22Fibronectin type II domain
22211315118Fibronectin type III domain
22127Globin
531767148731893610116Glutathione S-transferase, C-terminal domain
4131123331312533Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
25939189232813572981827267Homeodomain
6232565522324552lactate/malate dehydrogenase, NAD binding domain
415Lectin C-type domain
22278107517161413165916167Myosin head (motor domain)
849641164273454463161255497Cytochrome P450
34725148234137991762342201832542111161512532,788Protein kinase domain
241922811917163121591215183Pyridine nucleotide-disulphide oxidoreductase
51829252825396054333451243265558Ras family
23215351818183121694221205Response regulator receiver domain
23343217328RNase H
1411369805270759197911039555891011,222RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2134111Reverse transcriptase (RNA-dependent DNA polymerase)
22Serpin (serine protease inhibitor)
31323332335233Copper/zinc superoxide dismutase (SODC)
2421221112122225Iron/manganese superoxide dismutases, alpha-hairpin domain
6235621018162439221691321266Subtilase family
2235123271134281711222840245Sugar (and other) transporter
302816121216151317171591515212Thioredoxin
1113Trefoil (P-type) domain
421827222315268Trypsin
11Thrombospondin type 1 domain
168764689988877111Tubulin/FtsZ family, GTPase domain
114551127von Willebrand factor type A domain
11von Willebrand factor type D domain
897471041640502920350161881886441,032Zinc finger, C2H2 type
9316391076462455688250266913676Zinc finger, C3HC4 type (RING finger)
24210224891770232220151210268Zinc knuckle
101242266545523562Protein-tyrosine phosphatase
53122116255432343394526103640536short chain dehydrogenase
208409191719237212352137269Zinc-binding dehydrogenase
102684578514545882Thiolase, N-terminal domain
423124232113313264Beta-ketoacyl synthase, N-terminal domain
61461664344331522Fe-2S iron-sulfur cluster binding domain
41111132212211528Enolase, C-terminal TIM barrel domain
1214Cytochrome C and Quinol oxidase polypeptide I
1113Cytochrome C oxidase subunit II, periplasmic domain
15179678910879189114Glutamine amidotransferase class-I
198109910111115121011121015172TCP-1/cpn60 chaperonin family
11ATP synthase A chain
21281145624513550Glutamine synthetase, catalytic domain
51112111112111121Triosephosphate isomerase
49117262434304026163126142239395E1-E2 ATPase
1537155131314208271318148193Core histone H2A/H2B/H3/H4
33Bacterial regulatory helix-turn-helix protein, lysR family
112Copper binding proteins, plastocyanin/azurin family
212113115121829Alpha amylase, catalytic domain
175824611714101321210121Phorbol esters/diacylglycerol binding domain (C1 domain)
121865557516865911109Bacterial transferase hexapeptide (six repeats)
71524477442443765tRNA synthetases class I (I, L, M and V)
20316217101119181813198918210Cyclin, N-terminal domain
2218212121262213285Carboxylesterase family
10235544541012446684DNA polymerase family B
6333234434443551ATP synthase subunit C
1111127Legume lectin domain
42102124213332452Peroxidase
114Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
21193911712156Beta-lactamase
10522221428125147C-5 cytosine-specific DNA methylase
1214NADH dehydrogenase
33424251122303634382931121936384Calcineurin-like phosphoesterase
1841844247425779Cellulase (glycosyl hydrolase family 5)
142565666635656788tRNA synthetases class II (D, K and N)
8132493637596154135553295172682Mitochondrial carrier protein
263916121918202026191871622251Aminotransferase class I and II
22181138571110810596124Phosphoribosyl transferase domain
11Sigma-54 interaction domain
30114141514141514161917121815228Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
2111111122111218Phosphoglycerate kinase
51221123323312334Ribosomal protein S4/S9 N-terminal domain
4222234423413339Ribosomal protein S12/S23
44Bacterial regulatory helix-turn-helix proteins, AraC family
2111112211111218Chaperonin 10 Kd subunit
7211022107291922331720132720322C2 domain
5016171118233548451953224630433PH domain
25516262231197202921439237bZIP transcription factor
151124917141512116123918176Aldehyde dehydrogenase family
30156842523574717804612554492Fungal Zn(2)-Cys(6) binuclear cluster domain
4522401715243439133438153540411Cytochrome b5-like Heme/Steroid binding domain
1411321114120Oxidoreductase molybdopterin binding domain
2735115211014133161371715180Oxidoreductase NAD-binding domain
40415261820222420163122172927331SNF2 family N-terminal domain
44222224312312438Ribosomal protein S7p/S5e
441123291918232220262922162625353Ubiquitin-conjugating enzyme
134655878357451090Isocitrate/isopropylmalate dehydrogenase
3222234412412537Ribosomal Proteins L2, RNA binding domain
310215Chitinase class I
61233224432432546Hsp90 protein
411122263222230Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2111112211211118Dihydrofolate reductase
315111119215130Chitin recognition protein
24111461533181726211114Cysteine-rich secretory protein family
22122115411411533Ribosomal protein S3, C-terminal domain
1126322Annexin
314116117Eukaryotic-type carbonic anhydrase
11Bacterial regulatory proteins, luxR family
5333345434346502-oxoacid dehydrogenases acyltransferase (catalytic domain)
131234232425Catalase
101122321221229Disintegrin
39113711136UDP-glucoronosyl and UDP-glucosyl transferase
81283446614515664Aminotransferase class-III
4222223442312437Ribosomal protein S19
21111111111112117DNA gyrase B
231215351312635Thiamine pyrophosphate enzyme, central domain
101343334433324555Lyase
9222443374321349Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
224Sodium:neurotransmitter symporter family
2122223216Ferritin-like domain
28667122231928122100Adenylate and Guanylate cyclase catalytic domain
211111111111114ATP synthase delta (OSCP) subunit
211111111111114Orotidine 5'-phosphate decarboxylase / HUMPS family
211111112111216Indole-3-glycerol phosphate synthase
213Aromatic amino acid lyase
4333133313333238Pyruvate kinase, barrel domain
57217222111142920242628182730346Kinesin motor domain
551036332327294234363535233738493DnaJ domain
26914161214141414141414141416219Proteasome subunit
12134311222110113662Major intrinsic protein
2111112211111218ATP synthase
110415Glycosyl hydrolase family 1
238510237681068881123'5'-cyclic nucleotide phosphodiesterase
2132131121212224Profilin
4224234512412642Ribosomal protein L22p/L17e
5221223312322232Ribosomal protein L14p/L23e
66Resolvase, N terminal domain
2921320618201723242019102335279Ubiquitin family
13566557494626684Cofilin/tropomyosin-type actin-binding protein
412123331142153314-3-3 protein
193436333110325671Alkaline phosphatase
74744491444Zinc carboxypeptidase
17153751717182012151821227223Aldo/keto reductase family
2681613821191920201331112126272Myb-like DNA-binding domain
91241561010427431078Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
2112134111421Ribosomal protein L16p/L10e
1121223412312429Ribosomal protein S14p/S29e
76645846611547786FKBP-type peptidyl-prolyl cis-trans isomerase
81141122214212234Glutathione peroxidase
312131141118
161374275913481161012136Flavodoxin
2312231232122127Calreticulin family
1910710125366Common central domain of tyrosinase
1113Thymidine kinase
1624945985375151194Aminotransferase class-V
221211312112322Ribonucleotide reductase, small chain
83848455241575247425349434960729DEAD/DEAH box helicase
13613667969638584747495786891861,161Helicase conserved C-terminal domain
411111110Fructose-bisphosphate aldolase class-I
211211111211116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
31222234311322435Ribosomal protein L23
5121111112111322Pyridoxal-dependent decarboxylase, C-terminal sheet domain
71111223522411538Ribosomal protein L5
5292544516315456Pyridoxal-dependent decarboxylase conserved domain
5426142213124340Citrate synthase, C-terminal domain
82655666656626681GHMP kinases N terminal domain
1359458911399279103Biotin carboxylase, N-terminal domain
111111112111114Tryptophan synthase alpha chain
14261378899101494913135Pyridoxal-phosphate dependent enzyme
2318287101520161282161523213NUDIX domain
7243446638626768pfkB family carbohydrate kinase
4132915640Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
41222234312322538Ribosomal protein L3
31222234512412539Ribosomal protein L11, RNA binding domain
144115781111671021010116Histidine phosphatase superfamily (branch 1)
11Rubredoxin
1111111111112115Thymidylate synthase
55Lipoxygenase
11142345912446441285ATP synthase alpha/beta chain, C terminal domain
1416106614109159951218144Calponin homology (CH) domain
11Bacterial dnaA protein
131361525636627773Glutamine amidotransferases class-II
112Phosphoenolpyruvate carboxylase
41222432222312234Ribosomal protein S15
4112222111118'Cold-shock' DNA-binding domain
15542522Thaumatin family
9111111111111122Fructose-1-6-bisphosphatase, N-terminal domain
212113421311426Ribonucleotide reductase, all-alpha domain
82222224423222544Ribosomal protein S2
1111144972923963SRF-type transcription factor (DNA-binding and dimerisation domain)
41271761828383514274052344345GATA zinc finger
3018383159101913118598205Amino acid permease
157610101076513681110124Prolyl oligopeptidase family
22112125512411434Ribosomal protein L30p/L7e
18116110632535210477Histidine phosphatase superfamily (branch 2)
21111111211114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
8245446553514864Aconitase family (aconitate hydratase)
12122Glycosyl hydrolase family 10
44312216Glycosyl hydrolases family 17
5122213352323438Ribosomal protein S5, N-terminal domain
13455526438545675Nucleoside diphosphate kinase
4322186522424651Tetraspanin family
43112223311311331Ribosomal protein S10p/S20e
232121333221916440157Arrestin (or S-antigen), N-terminal domain
32111111111111118Phosphoglucose isomerase
211211211211218Carbohydrate phosphorylase
2111112221231222SecY translocase
21121111111114Respiratory-chain NADH dehydrogenase, 49 Kd subunit
41222323412322437Ribosomal protein L6
72333335423513754Polyprenyl synthetase
4122234107438121265Hexokinase
814534910834745883Dynamin family
311122112111118Biopterin-dependent aromatic amino acid hydroxylase
21111112221111119Transcription factor TFIID (or TATA-binding protein, TBP)
4210317456419460Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
22Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
134Phytochrome region
336Proton-conducting membrane transporter
1679699131019115814127Biotin-requiring enzyme
51133112242211130Phosphofructokinase
4221222213212329Ribosomal protein S17
212131231121424Hydroxymethylglutaryl-coenzyme A reductase
3441336612613649FGGY family of carbohydrate kinases, N-terminal domain
212233114FERM central domain
2111221211317Sodium:dicarboxylate symporter family
213MerR family regulatory protein
24638691211112121261113173Enoyl-CoA hydratase/isomerase
4212234413422438Ribosomal protein S9/S16
112PTS HPr component phosphorylation site
61231433322222440Transcription factor TFIIB repeat
126103968459646997Cytidine and deoxycytidylate deaminase zinc-binding region
2212111211115Molybdopterin oxidoreductase
132510592218224817101313171Chromo (CHRromatin Organisation MOdifier) domain
6111111113Phosphatidylinositol-specific phospholipase C, Y domain
411112511118Phosphatidylinositol-specific phospholipase C, X domain
612102255543512558D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
252542253535Malic enzyme, N-terminal domain
112PEP-utilising enzyme, mobile domain
112Bacterial regulatory proteins, gntR family
21122112212122226-phosphogluconate dehydrogenase, C-terminal domain
36420255842867Multicopper oxidase
11Granulin
241612751212715221241414167WW domain
61211233311321232Ribosomal RNA adenine dimethylase
318201751471451221611641621971911611372021802,482WD domain, G-beta repeat
11Calponin family repeat
843396443335560Heavy-metal-associated domain
12868346548536684Adenylate kinase
11Pathogenesis-related protein Bet v I family
4232232222222333Phosphoglucomutase/phosphomannomutase, C-terminal domain
41222233312312334Ribosomal protein S8
31221232312322332Ribosomal protein S11
221261071116141451211415159LIM domain
41336275425423657Regulator of chromosome condensation (RCC1) repeat
41222134212412435Ribosomal protein S13/S18
111111219Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
422122221222226chorismate binding enzyme
1034225874373677160s Acidic ribosomal protein
21121119CUB domain
81444444444435461Prenyltransferase and squalene oxidase repeat
157936910111214106129133Protein kinase C terminal domain
3111211111114Single-strand binding protein family
1113Type II/IV secretion system protein
211111114