Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
PFAM Domains • Leucoagaricus gongylophorus AB2 v1.0
Annotations/GenomesAgabi_varbisH97_2Agabi_varbur_1Copci1Leugo1_1Leugon1Macfu1PleosPC15_2Schco3TotalAnnotation Description
PFAMs
6,9507,0187,6784,2048,1478,3007,9728,59058,859
117 transmembrane receptor (rhodopsin family)
3839433135484743324ATPase family associated with various cellular activities (AAA)
3636462830433946304ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
1616151215151515119Elongation factor Tu GTP binding domain
91110111011111386Helix-loop-helix DNA-binding domain
4473887950Hsp20/alpha crystallin family
77897811764Hsp70 protein
998710108970KH domain
11114SH2 domain
3028311615292827204SH3 domain
111112121212111192Actin
181793132232260248Ankyrin repeat
5683798753ADP-ribosylation factor family
151513914212426137Eukaryotic aspartyl protease
3332433324Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
123Cytochrome b/b6/petB
111111118Cytochrome c
65626961353Double-stranded RNA binding motif
191919102171920125EF hand
112211194Fe-4S binding domain
11111117Fibronectin type III domain
11Globin
2730143219815118Glutathione S-transferase, C-terminal domain
2231112113Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
771061112101174Homeodomain
1121117Laminin EGF domain
2221253219lactate/malate dehydrogenase, NAD binding domain
5456555641Myosin head (motor domain)
1161111345284178143114932Cytochrome P450
136130136901532611551621,223Protein kinase domain
131317107202011111Pyridine nucleotide-disulphide oxidoreductase
2525321928272627209Ras family
668489101263Response regulator receiver domain
77228111047RNase H
6057644862646770492RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1411723Reverse transcriptase (RNA-dependent DNA polymerase)
1111116Copper/zinc superoxide dismutase (SODC)
1122222315Iron/manganese superoxide dismutases, alpha-hairpin domain
77127689359Subtilase family
2729202637282741235Sugar (and other) transporter
121294910151384Thioredoxin
5554756542Tubulin/FtsZ family, GTPase domain
343134321von Willebrand factor type A domain
3739609215457100377Zinc finger, C2H2 type
43474896575971340Zinc finger, C3HC4 type (RING finger)
836421207134422274Zinc knuckle
2322222217Protein-tyrosine phosphatase
54544923367280112480short chain dehydrogenase
2727291818344147241Zinc-binding dehydrogenase
6644544437Thiolase, N-terminal domain
3323322321Beta-ketoacyl synthase, N-terminal domain
33311333202Fe-2S iron-sulfur cluster binding domain
111112119Enolase, C-terminal TIM barrel domain
325Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
99861387868Glutamine amidotransferase class-I
101010111010101081TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
4443343328Glutamine synthetase, catalytic domain
111111118Triosephosphate isomerase
77118101213977E1-E2 ATPase
1614161116181722130Core histone H2A/H2B/H3/H4
22112210Copper binding proteins, plastocyanin/azurin family
66845791257Alpha amylase, catalytic domain
536353530Phorbol esters/diacylglycerol binding domain (C1 domain)
2353655433Bacterial transferase hexapeptide (six repeats)
3333532325tRNA synthetases class I (I, L, M and V)
101012791291382Cyclin, N-terminal domain
1919191224282626173Carboxylesterase family
5443644434DNA polymerase family B
3333433325ATP synthase subunit C
55412310232Peroxidase
33263320Beta-lactamase
4343345632C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
2223311323262724189Calcineurin-like phosphoesterase
88115131213676Cellulase (glycosyl hydrolase family 5)
5554555640tRNA synthetases class II (D, K and N)
3432361934363437262Mitochondrial carrier protein
1313161210111316104Aminotransferase class I and II
5566457745Phosphoribosyl transferase domain
13131491113101497Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2221122214Ribosomal protein S4/S9 N-terminal domain
2222122215Ribosomal protein S12/S23
2211111110Chaperonin 10 Kd subunit
141317810161818114C2 domain
20201987211819132PH domain
55651056648bZIP transcription factor
2425121916261916157Aldehyde dehydrogenase family
5050421339675388402Fungal Zn(2)-Cys(6) binuclear cluster domain
2020241321262225171Cytochrome b5-like Heme/Steroid binding domain
1122232114Oxidoreductase molybdopterin binding domain
661057781160Oxidoreductase NAD-binding domain
1921261719252622175SNF2 family N-terminal domain
2121222214Ribosomal protein S7p/S5e
1819231222202021155Ubiquitin-conjugating enzyme
6656675546Isocitrate/isopropylmalate dehydrogenase
2221222215Ribosomal Proteins L2, RNA binding domain
2222222317Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
4421245527Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
2211212314Cupin
113117Annexin
33333343252-oxoacid dehydrogenases acyltransferase (catalytic domain)
3342252223Catalase
11111117Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
5555455539Aminotransferase class-III
2221322216Ribosomal protein S19
111111118DNA gyrase B
3343745433Thiamine pyrophosphate enzyme, central domain
3332333323Lyase
2222221215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111221110Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
1122321214Indole-3-glycerol phosphate synthase
2222122215Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
998991091073Kinesin motor domain
3130321635362930239DnaJ domain
1414141115141414110Proteasome subunit
4423477334Major intrinsic protein
111211119ATP synthase
1122133316Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
2211321113Ribosomal protein L22p/L17e
2221222215Ribosomal protein L14p/L23e
131117916231613118Ubiquitin family
5554555741Cofilin/tropomyosin-type actin-binding protein
112233221614-3-3 protein
332195326Alkaline phosphatase
111111129Zinc carboxypeptidase
2121221518364260235Aldo/keto reductase family
1312138815151195Myb-like DNA-binding domain
5552575842Forkhead domain
123Glycosyl hydrolases family 32 N-terminal domain
11121219Ribosomal protein L16p/L10e
112222212Ribosomal protein S14p/S29e
5532458537FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
222112212
7765376748Flavodoxin
111111118Calreticulin family
66191134141Common central domain of tyrosinase
777610711964Aminotransferase class-V
2221222316Ribonucleotide reductase, small chain
4746513050445566389DEAD/DEAH box helicase
7777925067849297636Helicase conserved C-terminal domain
11114Fructose-bisphosphate aldolase class-I
11211118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111118Ribosomal protein L5
4454445737Pyridoxal-dependent decarboxylase conserved domain
3353433327Citrate synthase, C-terminal domain
4443555535GHMP kinases N terminal domain
7765676549Biotin carboxylase, N-terminal domain
1112211110Tryptophan synthase alpha chain
7777877858Pyridoxal-phosphate dependent enzyme
121217411161514101NUDIX domain
3342455632pfkB family carbohydrate kinase
6633666339Glycosyl hydrolases family 28
2222222317Ribosomal protein L3
2222222216Ribosomal protein L11, RNA binding domain
987581110967Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
22Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
4442344530Calponin homology (CH) domain
5545255536Glutamine amidotransferases class-II
1122222214Ribosomal protein S15
3351431130Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2122221214Ribosomal protein S2
2212222417SRF-type transcription factor (DNA-binding and dimerisation domain)
1111119101091283GATA zinc finger
15141358252021121Amino acid permease
11Bacterial regulatory proteins, crp family
5552558742Prolyl oligopeptidase family
1111321111Ribosomal protein L30p/L7e
8859101213974Histidine phosphatase superfamily (branch 2)
111121119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5544444434Aconitase family (aconitate hydratase)
22623103533Glycosyl hydrolase family 10
3331141218Glycosyl hydrolases family 17
1221222214Ribosomal protein S5, N-terminal domain
2222222216Nucleoside diphosphate kinase
223413116Tetraspanin family
22Galactoside-binding lectin
2222222216Ribosomal protein S10p/S20e
1131234520Arrestin (or S-antigen), N-terminal domain
112111119Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
1111113110SecY translocase
11111128Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2221322216Ribosomal protein L6
33442854657Polyprenyl synthetase
2222222216Hexokinase
7744986954Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
3342242222Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11Phytochrome region
516Proton-conducting membrane transporter
10109691014977Biotin-requiring enzyme
111111118Phosphofructokinase
2221222215Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
3332243323FGGY family of carbohydrate kinases, N-terminal domain
77767810961Enoyl-CoA hydratase/isomerase
3322222218Ribosomal protein S9/S16
2231222216Transcription factor TFIIB repeat
445556635Cytidine and deoxycytidylate deaminase zinc-binding region
211111119Molybdopterin oxidoreductase
1087678222997Chromo (CHRromatin Organisation MOdifier) domain
333133420Phosphatidylinositol-specific phospholipase C, Y domain
333134320Phosphatidylinositol-specific phospholipase C, X domain
6663875748D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3321233320Malic enzyme, N-terminal domain
11111122106-phosphogluconate dehydrogenase, C-terminal domain
13131791031126111Multicopper oxidase
991258137972WW domain
2221322216Ribosomal RNA adenine dimethylase
11411312461114119140132917WD domain, G-beta repeat
2221234420Heavy-metal-associated domain
3333333324Adenylate kinase
2222222115Phosphoglucomutase/phosphomannomutase, C-terminal domain
112111119Ribosomal protein S8
1121112110Ribosomal protein S11
6651765642LIM domain
3431223321Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
3323242221chorismate binding enzyme
333324332460s Acidic ribosomal protein
4541545432Prenyltransferase and squalene oxidase repeat
5574576746Protein kinase C terminal domain
111115Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
1010119111191182Bromodomain
88978910968Acyl-CoA dehydrogenase, C-terminal domain
1615151316141617122Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
222234116Ribonuclease T2 family
61034446441HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
111111129Urease alpha-subunit, N-terminal domain
1413571319121093Serine carboxypeptidase
9988888866Phosphatidylinositol 3- and 4-kinase
2223122317Transketolase, thiamine diphosphate binding domain
2261252121Glycosyl hydrolases family 11
1111116WHEP-TRS domain
3321422724Inositol monophosphatase family
5541344531Glutaredoxin
6633266335Isocitrate lyase family
2211111110Serine hydroxymethyltransferase
3321222419Iron-containing alcohol dehydrogenase
2212122214Ribosomal protein L10
2142355527KOW motif
1111116Ribosomal protein L34
11Ribosomal protein L33
233333320RF-1 domain
1112319Sodium:solute symporter family
111115Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111129Glucose-6-phosphate dehydrogenase, NAD binding domain
998371181368Protein phosphatase 2C
2212333117Nucleotidyl transferase
3372448233Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
1010861112121382Fatty acid desaturase
6664766647MutS domain V
111111118Delta-aminolevulinic acid dehydratase
2221255423Arginase family
6665666647MCM P-loop domain
1111212110Squalene/phytoene synthase
888491011967FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
3029302032323231236AMP-binding enzyme
1313161113181415113G-protein alpha subunit
121226814131735137HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
3342566938His Kinase A (phospho-acceptor) domain
4423342426Armadillo/beta-catenin-like repeat
2625291811281927183Tetratricopeptide repeat
4332452326Ion transport protein
1122111110DNA gyrase/topoisomerase IV, subunit A
88106610101068BRCA1 C Terminus (BRCT) domain
6662566744Glycosyl transferases group 1
3344443429Glycosyl transferase family 2
13138SAM domain (Sterile alpha motif)
3343543328linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
1111128419Pectate lyase
111135214ribonuclease
11111128Urease, gamma subunit
3333333324CoA-ligase
45667761657Phosphopantetheine attachment site
2221223216Formyl transferase
101095910101174Metallopeptidase family M24
17181582151716108Leucine Rich Repeat
41403456424751266alpha/beta hydrolase fold
3333433325RNA polymerase Rpb2, domain 6
5554644538PB1 domain
2222222216Staphylococcal nuclease homologue
101095121091176Rab-GTPase-TBC domain
111111118Tudor domain
1111221110WH1 domain
3341333323Zinc finger, ZZ type
1111116HRDC domain
88116677962CBS domain
2222322217Ribosomal protein L13
2223222217Ribosomal protein L4/L1 family
11111117Clp protease
4562443432S1 RNA binding domain
11114HIUase/Transthyretin family
4443446837AhpC/TSA family
3342444428tRNA synthetases class I (W and Y)
11112118UvrD/REP helicase N-terminal domain
4443834434Rhodanese-like domain
212222213Universal stress protein family
252528816292730188Acetyltransferase (GNAT) family
111115SecE/Sec61-gamma subunits of protein translocation complex
111121119C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
5576667648tRNA synthetase class II core domain (G, H, P, S and T)
1113Phage integrase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111129Glycosyl transferase family, a/b domain
112211210Class II Aldolase and Adducin N-terminal domain
2221533422Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
6655655644Fes/CIP4, and EFC/F-BAR homology domain
4243255429IQ calmodulin-binding motif
2221222215Phosphoinositide 3-kinase family, accessory domain (PIK domain)
3331333322Phospholipase D Active site motif
1111512113Regulator of G protein signaling domain
4343445431GTPase-activator protein for Ras-like GTPase
66105558651RasGEF domain
7594468649RasGEF N-terminal motif
11111281213121392RhoGAP domain
1514141113171213109RhoGEF domain
4342444429SPRY domain
3333334325RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
4442353328Gelsolin repeat
910117899972UBA/TS-N domain
151618718161515120PHD-finger
112112210GGL domain
6555555642HECT-domain (ubiquitin-transferase)
332123216Helix-hairpin-helix motif
1131113213MSP (Major sperm protein) domain
7764467647Ribonuclease III domain
2223422219Region in Clathrin and VPS
3332433425RanBP1 domain
22222212PPIC-type PPIASE domain
11433416Zn-finger in Ran binding protein and others
21232279262028156Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
2252531029Poly(ADP-ribose) polymerase catalytic domain
2221221214Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
93831971310168117264945F-box domain
111111118Elongation factor 1 gamma, conserved domain
119131218Calpain family cysteine protease
112122312Copper fist DNA binding domain
66747107552CRAL/TRIO domain
121319521201221123BTB/POZ domain
1517173440199124Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
3331332321Voltage gated chloride channel
99154313111175Caspase domain
881034108859GDSL-like Lipase/Acylhydrolase
111111129Poly-adenylate binding protein, unique domain
111111118POLO box duplicated region
1515231113241624141ABC transporter transmembrane region
569121Integrase core domain
3332334324FAD binding domain
2112713Condensation domain
2211112111S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1121213112HAMP domain
2221222215ribosomal L5P family C-terminus
6653655541Insulinase (Peptidase family M16)
4445544434Dehydrogenase E1 component
111111118Lumazine binding domain
7875777755Elongation factor G C-terminus
5444374435HMGL-like
4443443430DnaJ central domain
1131233115Starch binding domain
2222322217Ribosomal protein L1p/L10e family
3362377435Cation transporting ATPase, C-terminus
4482378541Cation transporter/ATPase, N-terminus
111111118dUTPase
5544444434Aconitase C-terminal domain
3341335325Amino acid kinase family
1121311111N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2333323423Acyl transferase domain
111111129Urease beta subunit
2221222215Dihydrodipicolinate synthetase family
242424146262830176haloacid dehalogenase-like hydrolase
1111112311Glycosyl hydrolases family 2
111297914111487Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
11Acylphosphatase
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
3311433220Peptidase S24-like
11111117Inorganic pyrophosphatase
4465857544Glycosyl hydrolases family 16
2242233321Glycosyl hydrolases family 15
556249132266NADH:flavin oxidoreductase / NADH oxidase family
1111211193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
4422242525Glycosyl hydrolase family 20, catalytic domain
6641755539HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
3437341527584123269GMC oxidoreductase
2221222215Asparagine synthase
16184461324315157Fungal cellulose binding domain
7776676753Septin
111111118EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
232352219Flavin-binding monooxygenase-like
3333233323tRNA synthetases class I (E and Q), catalytic domain
1111122110tRNA synthetases class I (R)
5553557742XPG N-terminal domain
98103411101368Metallo-beta-lactamase superfamily
11114F5/8 type C domain
4446444535Choline/Carnitine o-acyltransferase
111111118Putative esterase
111111118Glycosyl hydrolase family 9
111111118Ferrochelatase
2221233217Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111121119Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain