PFAM Domains • Glomeromycotina
Annotations/GenomesGigro1Gloin1Rhice1_1Rhidi1Rhiir2_1RhiirA1_1RhiirA4RhiirA5RhiirB3RhiirC2TotalAnnotation Description
PFAMs
18,49712,10413,29314,19915,93111,38410,45010,42910,48710,408127,182
815121443341557 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
57515346495348525148508ATPase family associated with various cellular activities (AAA)
64424744416242404540467ABC transporter
544445455545ATP synthase alpha/beta family, nucleotide-binding domain
22142016161814161715168Elongation factor Tu GTP binding domain
21111212131212121212129Helix-loop-helix DNA-binding domain
17111415151411141311135Hsp20/alpha crystallin family
26373853633435373737397Hsp70 protein
11262028323228252929260KH domain
213Methyl-accepting chemotaxis protein (MCP) signalling domain
1111116SH2 domain
18282320213131293033264SH3 domain
11101010101010101010101Actin
6314683029293030203Ankyrin repeat
11PAN domain
989999999989ADP-ribosylation factor family
108977812119109190Eukaryotic aspartyl protease
444445444441Cyclic nucleotide-binding domain
11114Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
111111111110Cytochrome c
8778891089781Double-stranded RNA binding motif
1293333032313130193EF hand
11111164Fe-4S binding domain
111111118Fibronectin type III domain
11Globin
21231430293337333028278Glutathione S-transferase, C-terminal domain
422223222223Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
6977699109981Homeodomain
111111118Laminin EGF domain
333333433331lactate/malate dehydrogenase, NAD binding domain
655555555551Myosin head (motor domain)
3461911141632022012062091971902,019Cytochrome P450
7941,0095897639316035195395825166,845Protein kinase domain
1289999999992Pyridine nucleotide-disulphide oxidoreductase
69292831303029283029333Ras family
130171313131914141414261Response regulator receiver domain
1736222034788110992100589RNase H
94889387891039810210997960RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
33Serpin (serine protease inhibitor)
733344344338Copper/zinc superoxide dismutase (SODC)
112222222218Iron/manganese superoxide dismutases, alpha-hairpin domain
15221524222623252225219Subtilase family
1879786776782Sugar (and other) transporter
1281211111091099101Thioredoxin
11111117Trefoil (P-type) domain
205115656655Trypsin
665667566659Tubulin/FtsZ family, GTPase domain
116122325262320137von Willebrand factor type A domain
239130243598102108110108729Zinc finger, C2H2 type
5574345856605964370Zinc finger, C3HC4 type (RING finger)
32561821227583948154536Zinc knuckle
234443333332Protein-tyrosine phosphatase
69414341485745434242471short chain dehydrogenase
19221419212522222121206Zinc-binding dehydrogenase
856556444451Thiolase, N-terminal domain
1111212212326Beta-ketoacyl synthase, N-terminal domain
6422244444362Fe-2S iron-sulfur cluster binding domain
1211111111121Enolase, C-terminal TIM barrel domain
552351311127Cytochrome C and Quinol oxidase polypeptide I
111126Cytochrome C oxidase subunit II, periplasmic domain
8888810889883Glutamine amidotransferase class-I
10101010101010101010100TCP-1/cpn60 chaperonin family
111115ATP synthase A chain
555555565551Glutamine synthetase, catalytic domain
111112111111Triosephosphate isomerase
30242533312523242124260E1-E2 ATPase
16212123222123212222212Core histone H2A/H2B/H3/H4
437Bacterial regulatory helix-turn-helix protein, lysR family
42422223324Copper binding proteins, plastocyanin/azurin family
232223222222Alpha amylase, catalytic domain
255555545546Phorbol esters/diacylglycerol binding domain (C1 domain)
9868710978880Bacterial transferase hexapeptide (six repeats)
61077996128680tRNA synthetases class I (I, L, M and V)
10711109101010111098Cyclin, N-terminal domain
23333222222Carboxylesterase family
75254854332325282847386DNA polymerase family B
443443333334ATP synthase subunit C
11Sigma-70 factor, region 1.2
222222222220Peroxidase
822224222228Beta-lactamase
766444654551C-5 cytosine-specific DNA methylase
12123111113NADH dehydrogenase
31302529292827322728286Calcineurin-like phosphoesterase
424333333331Cellulase (glycosyl hydrolase family 5)
678666666663tRNA synthetases class II (D, K and N)
40363836373737403736374Mitochondrial carrier protein
13111211111711111111119Aminotransferase class I and II
510555101011111082Phosphoribosyl transferase domain
112Sigma-54 interaction domain
1210101010910101110102Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
211112111112Phosphoglycerate kinase
322222222221Ribosomal protein S4/S9 N-terminal domain
223222222221Ribosomal protein S12/S23
314Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
21272124222524272724242C2 domain
24292021192929282731257PH domain
1051316137677791bZIP transcription factor
22121512122213121212144Aldehyde dehydrogenase family
97203021202926252630324Fungal Zn(2)-Cys(6) binuclear cluster domain
48292726312930303127308Cytochrome b5-like Heme/Steroid binding domain
232222222221Oxidoreductase molybdopterin binding domain
17141415151415151614149Oxidoreductase NAD-binding domain
15191617162018182020179SNF2 family N-terminal domain
222222222220Ribosomal protein S7p/S5e
32543547555158655153501Ubiquitin-conjugating enzyme
765557555555Isocitrate/isopropylmalate dehydrogenase
232233333327Ribosomal Proteins L2, RNA binding domain
11Chitinase class I
1322222222231Hsp90 protein
222223222221Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
211111119Chitin recognition protein
732334333334Cysteine-rich secretory protein family
213221111115Ribosomal protein S3, C-terminal domain
233333333329Eukaryotic-type carbonic anhydrase
81211Bacterial regulatory proteins, luxR family
3333333333302-oxoacid dehydrogenases acyltransferase (catalytic domain)
111111111110Disintegrin
47181621272122252423244UDP-glucoronosyl and UDP-glucosyl transferase
443335454338Aminotransferase class-III
222222222220Ribosomal protein S19
536223222229DNA gyrase B
233333333329Thiamine pyrophosphate enzyme, central domain
333335333332Lyase
233334333330Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Ferritin-like domain
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
121111111111Orotidine 5'-phosphate decarboxylase / HUMPS family
111111213113Indole-3-glycerol phosphate synthase
33Aromatic amino acid lyase
111112111111Pyruvate kinase, barrel domain
22301722242224222123227Kinesin motor domain
37374133373636353535362DnaJ domain
14151415151616151617153Proteasome subunit
333334333331Major intrinsic protein
111111111110ATP synthase
2222222222203'5'-cyclic nucleotide phosphodiesterase
111115Protease inhibitor/seed storage/LTP family
111111111110Profilin
332222222222Ribosomal protein L22p/L17e
322122222220Ribosomal protein L14p/L23e
54735164717279747372683Ubiquitin family
857666666662Cofilin/tropomyosin-type actin-binding protein
22222222222014-3-3 protein
122222222219Alkaline phosphatase
11Zinc carboxypeptidase
37482843525252535045460Aldo/keto reductase family
21512629295258575355431Myb-like DNA-binding domain
554555545548Forkhead domain
213221111115Ribosomal protein L16p/L10e
222222232221Ribosomal protein S14p/S29e
322222222221FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
22222212
455556666654Flavodoxin
222232222221Calreticulin family
1821122Common central domain of tyrosinase
112Thymidine kinase
7777710788775Aminotransferase class-V
11Gram-negative porin
312111111113Ribonucleotide reductase, small chain
62565856515553535650550DEAD/DEAH box helicase
95868681889082908480862Helicase conserved C-terminal domain
231323222222EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
522222222223Ribosomal protein L23
122222223220Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111111110Ribosomal protein L5
1044444644448Pyridoxal-dependent decarboxylase conserved domain
323332422226Citrate synthase, C-terminal domain
666666666660GHMP kinases N terminal domain
777778787772Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
878778777773Pyridoxal-phosphate dependent enzyme
1113'Paired box' domain
84141315142115171914226NUDIX domain
667668666663pfkB family carbohydrate kinase
223222222221Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
61010101010101010995Histidine phosphatase superfamily (branch 1)
11Rubredoxin
11Chloramphenicol acetyltransferase
311112111113Thymidylate synthase
11Gamma-thionin family
544445455545ATP synthase alpha/beta chain, C terminal domain
658557777764Calponin homology (CH) domain
213Bacterial dnaA protein
486446666656Glutamine amidotransferases class-II
722223222226Ribosomal protein S15
61112122117'Cold-shock' DNA-binding domain
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
323323212223Ribonucleotide reductase, all-alpha domain
323222222222Ribosomal protein S2
422333433330SRF-type transcription factor (DNA-binding and dimerisation domain)
21242919202225232724234GATA zinc finger
6111210101059Amino acid permease
668786666665Prolyl oligopeptidase family
222222222220Ribosomal protein L30p/L7e
1664555555662Histidine phosphatase superfamily (branch 2)
211111111111Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444444440Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
212222222219Ribosomal protein S5, N-terminal domain
211112111112Nucleoside diphosphate kinase
225321212222Tetraspanin family
322222212220Ribosomal protein S10p/S20e
20152325271717171717195Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
121111111111Carbohydrate phosphorylase
111112111111SecY translocase
22Pili and flagellar-assembly chaperone, PapD N-terminal domain
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
533334333333Polyprenyl synthetase
221222222219Hexokinase
1161112138888893Dynamin family
111111111110Biopterin-dependent aromatic amino acid hydroxylase
111111211111Transcription factor TFIID (or TATA-binding protein, TBP)
253235555540Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
22Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
34433320Proton-conducting membrane transporter
678889898879Biotin-requiring enzyme
111112111111Phosphofructokinase
212223222220Ribosomal protein S17
412221111116Hydroxymethylglutaryl-coenzyme A reductase
222322222221FGGY family of carbohydrate kinases, N-terminal domain
1142657645555Hemocyanin, copper containing domain
4149MerR family regulatory protein
1299981211101111102Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
433333333331Transcription factor TFIIB repeat
855556555554Cytidine and deoxycytidylate deaminase zinc-binding region
131111111112Molybdopterin oxidoreductase
18811881413151211118Chromo (CHRromatin Organisation MOdifier) domain
211111111111Phosphatidylinositol-specific phospholipase C, Y domain
211111111111Phosphatidylinositol-specific phospholipase C, X domain
333234233430D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
211112111112Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
156Bacterial regulatory proteins, gntR family
1211321221166-phosphogluconate dehydrogenase, C-terminal domain
248108121311141112123Multicopper oxidase
1414S-layer homology domain
1111116Granulin
9121310121313131312120WW domain
323334333330Ribosomal RNA adenine dimethylase
1551421411411391441461461461441,444WD domain, G-beta repeat
377787555660Heavy-metal-associated domain
334444333334Adenylate kinase
223232222222Phosphoglucomutase/phosphomannomutase, C-terminal domain
222222222220Ribosomal protein S8
232233221222Ribosomal protein S11
555554545548LIM domain
11Matrixin
7512555555458Regulator of chromosome condensation (RCC1) repeat
333222222223Ribosomal protein S13/S18
11
121111111111Tau and MAP protein, tubulin-binding repeat
44Fimbrial protein
111115NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222225233225chorismate binding enzyme
44333333333260s Acidic ribosomal protein
554444444442Prenyltransferase and squalene oxidase repeat
563555666653Protein kinase C terminal domain
11Single-strand binding protein family
112Type II/IV secretion system protein
111111112111S-adenosylmethionine synthetase, N-terminal domain
13411536501941545246367Bromodomain
31419Bacterial regulatory proteins, tetR family
999910139911997Acyl-CoA dehydrogenase, C-terminal domain
44231721222227242324247Ubiquitin carboxyl-terminal hydrolase
111111111110Ribosomal protein L36
666866797768HSF-type DNA-binding
332245233229SRP54-type protein, GTPase domain
111111111110Urease alpha-subunit, N-terminal domain
2786877777993Serine carboxypeptidase
888888888880Phosphatidylinositol 3- and 4-kinase
11DeoR C terminal sensor domain
111111111110Transketolase, thiamine diphosphate binding domain
211111111111WHEP-TRS domain
832324344235Inositol monophosphatase family
11Flagella basal body rod protein
444444444440Glutaredoxin
211111112112Isocitrate lyase family
223222222221Serine hydroxymethyltransferase
55Iron-containing alcohol dehydrogenase
323232222223Ribosomal protein L10
545555444445KOW motif
1111111119Ribosomal protein L34
11Ribosomal protein L33
345444444440RF-1 domain
212223222220Sodium:solute symporter family
111112222215Imidazoleglycerol-phosphate dehydratase
122223222220DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
1210118101010101011102Protein phosphatase 2C
675557555555Nucleotidyl transferase
222222222321Carbonic anhydrase
121222222117Phosphoribulokinase / Uridine kinase family
415Transcriptional regulatory protein, C terminal
1310109910999997Fatty acid desaturase
955555555554MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
211113111113Arginase family
888888777776MCM P-loop domain
323332222224Squalene/phytoene synthase
33Bacterial extracellular solute-binding proteins, family 5 Middle
22Bacterial extracellular solute-binding proteins, family 3
1911788101188999FHA domain
11114NADH-ubiquinone/plastoquinone oxidoreductase chain 6
65222019223423252622278AMP-binding enzyme
1045555655555G-protein alpha subunit
1611311601631761421461461451411,511HMG (high mobility group) box
111115NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
111112111111Cytochrome c oxidase subunit III
1171091010121110913211His Kinase A (phospho-acceptor) domain
776667777767Armadillo/beta-catenin-like repeat
216594327378478908374791Tetratricopeptide repeat
543737424984102547855592Ion transport protein
4212222222232DNA gyrase/topoisomerase IV, subunit A
11112Binding-protein-dependent transport system inner membrane component
11HlyD membrane-fusion protein of T1SS
22Periplasmic binding proteins and sugar binding domain of LacI family
584666576659BRCA1 C Terminus (BRCT) domain
8118668678775Glycosyl transferases group 1
3114448555655Glycosyl transferase family 2
981411131019121210118SAM domain (Sterile alpha motif)
543334345236linker histone H1 and H5 family
121111111111Ribosomal protein L7/L12 C-terminal domain
111112111111Urease, gamma subunit
333336333333CoA-ligase
1523233222337Phosphopantetheine attachment site
612222222223Formyl transferase
11Antenna complex alpha/beta subunit
766778777769Metallopeptidase family M24
19551417176876696256453Leucine Rich Repeat
8264443029302827190alpha/beta hydrolase fold
455455455446RNA polymerase Rpb2, domain 6
246EAL domain
16101712121110111111121PB1 domain
121111111111Staphylococcal nuclease homologue
18151616161414151414152Rab-GTPase-TBC domain
111111111110Tudor domain
111111111110WH1 domain
815716151915151515140Zinc finger, ZZ type
111111111110HRDC domain
14131413131613121313134CBS domain
222222222220Ribosomal protein L13
333223222224Ribosomal protein L4/L1 family
111111111110Clp protease
453445444441S1 RNA binding domain
111111111110HIUase/Transthyretin family
22Outer membrane usher protein
434445444339AhpC/TSA family
446444444442tRNA synthetases class I (W and Y)
22854122UvrD/REP helicase N-terminal domain
9611998666676Rhodanese-like domain
534556554547Universal stress protein family
16231312112220201921177Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
211111111111C-terminal regulatory domain of Threonine dehydratase
212223232221AIR synthase related protein, N-terminal domain
811977111010101093tRNA synthetase class II core domain (G, H, P, S and T)
312111111113SpoU rRNA Methylase family
415Phage integrase family
333325333331Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
111111111110Class II Aldolase and Adducin N-terminal domain
645554444445Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
645555555449Fes/CIP4, and EFC/F-BAR homology domain
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