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PFAM Domains • Pseudographis elatina
Annotations/GenomesAmore1Botci1Chalo1Melbi2Melva1Oidma1Pseel1Sclsc1TotalAnnotation Description
PFAMs
7,3267,96112,98211,47113,38412,2698,9307,95782,280
1127 transmembrane receptor (rhodopsin family)
4046717568596239460ATPase family associated with various cellular activities (AAA)
3652846471755645483ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1412141414141414110Elongation factor Tu GTP binding domain
10919162015109108Helix-loop-helix DNA-binding domain
2254552227Hsp20/alpha crystallin family
8878798762Hsp70 protein
810121012810979KH domain
111111118SH2 domain
2423272926232723202SH3 domain
10710101010101077Actin
3266183255207148156471,094Ankyrin repeat
366651431PAN domain
7777778757ADP-ribosylation factor family
1216502442322210208Eukaryotic aspartyl protease
4444444432Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
112111119Cytochrome c
213322114Double-stranded RNA binding motif
1920211721181920155EF hand
12111122114Fe-4S binding domain
3242332221Fibronectin type III domain
111115Globin
715312131331912169Glutathione S-transferase, C-terminal domain
1212311112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
771181179767Homeodomain
2234332221lactate/malate dehydrogenase, NAD binding domain
4554655539Myosin head (motor domain)
65114232168221170142841,196Cytochrome P450
120951551801591281351081,080Protein kinase domain
1419332537291414185Pyridine nucleotide-disulphide oxidoreductase
2321293330302425215Ras family
1621312530161622177Response regulator receiver domain
333345975RNase H
6358666868556958505RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1937092Reverse transcriptase (RNA-dependent DNA polymerase)
11125Serpin (serine protease inhibitor)
1222222215Copper/zinc superoxide dismutase (SODC)
2111231112Iron/manganese superoxide dismutases, alpha-hairpin domain
24191317137580Subtilase family
47701591381901545855871Sugar (and other) transporter
1191614141111995Thioredoxin
1112231213Trypsin
4544464435Tubulin/FtsZ family, GTPase domain
3269642234von Willebrand factor type A domain
5250151139145946954754Zinc finger, C2H2 type
4137595971485439408Zinc finger, C3HC4 type (RING finger)
7291151364129Zinc knuckle
3332232321Protein-tyrosine phosphatase
11Somatotropin hormone family
80108271175264256149791,382short chain dehydrogenase
4159135941331347654726Zinc-binding dehydrogenase
6577775549Thiolase, N-terminal domain
822303220505022234Beta-ketoacyl synthase, N-terminal domain
54888454462Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
1222231114Enolase, C-terminal TIM barrel domain
7887879862Glutamine amidotransferase class-I
101010101010101080TCP-1/cpn60 chaperonin family
3355654334Glutamine synthetase, catalytic domain
2122222114Triosephosphate isomerase
1414182319161112127E1-E2 ATPase
89109898869Core histone H2A/H2B/H3/H4
11125Copper binding proteins, plastocyanin/azurin family
48871057958Alpha amylase, catalytic domain
2222212215Phorbol esters/diacylglycerol binding domain (C1 domain)
88789910766Bacterial transferase hexapeptide (six repeats)
3533334428tRNA synthetases class I (I, L, M and V)
7676777653Cyclin, N-terminal domain
1137584362642116312Carboxylesterase family
45444425DNA polymerase family B
4466656441ATP synthase subunit C
3365558338Peroxidase
5629252637114143Beta-lactamase
4664544538C-5 cytosine-specific DNA methylase
2824343536302620233Calcineurin-like phosphoesterase
810321927171413140Cellulase (glycosyl hydrolase family 5)
7777897759tRNA synthetases class II (D, K and N)
3735414141423636309Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
1420201620241814146Aminotransferase class I and II
7911119119875Phosphoribosyl transferase domain
101110101010101081Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222221215Ribosomal protein S12/S23
2111117Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
910161416911893C2 domain
1815191919171717141PH domain
107101111209886bZIP transcription factor
1815292638451513199Aldehyde dehydrogenase family
152109527329554469122932,355Fungal Zn(2)-Cys(6) binuclear cluster domain
2217272526372020194Cytochrome b5-like Heme/Steroid binding domain
2233321218Oxidoreductase molybdopterin binding domain
1614201718181411128Oxidoreductase NAD-binding domain
2427314238313525253SNF2 family N-terminal domain
2322222217Ribosomal protein S7p/S5e
2019242725221923179Ubiquitin-conjugating enzyme
6677997556Isocitrate/isopropylmalate dehydrogenase
2222212215Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2222232217Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2212111111Dihydrofolate reductase
35158936756Chitin recognition protein
2354626331Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
23745510137Cupin
2222222115Annexin
112116Eukaryotic-type carbonic anhydrase
111211119Chalcone and stilbene synthases, N-terminal domain
33343333252-oxoacid dehydrogenases acyltransferase (catalytic domain)
3710711113860Catalase
1122219Disintegrin
1647119UDP-glucoronosyl and UDP-glucosyl transferase
7681310158673Aminotransferase class-III
2222222216Ribosomal protein S19
111111118DNA gyrase B
448910147460Thiamine pyrophosphate enzyme, central domain
4355455334Lyase
2223332219Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1122221112Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
1121212111Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
112113312Aromatic amino acid lyase
112111119Pyruvate kinase, barrel domain
81112121110101084Kinesin motor domain
2831313534283432253DnaJ domain
1414141414141414112Proteasome subunit
31113101368973Major intrinsic protein
111111118ATP synthase
25445133339Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
111111118Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
1113221723121510123Ubiquitin family
5455544537Cofilin/tropomyosin-type actin-binding protein
222223211614-3-3 protein
2243322220Alkaline phosphatase
1311111312Zinc carboxypeptidase
2235554965683525354Aldo/keto reductase family
1615171718171814132Myb-like DNA-binding domain
4445434432Forkhead domain
223441117Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
221212212Ribosomal protein S14p/S29e
3354533329FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
2222211214
9812811137674Flavodoxin
111111118Calreticulin family
4920111777479Common central domain of tyrosinase
76121113136977Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
4239424244374440330DEAD/DEAH box helicase
7668869192818877659Helicase conserved C-terminal domain
11212119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
1311112111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2222222216Ribosomal protein L5
65688137659Pyridoxal-dependent decarboxylase conserved domain
3223233321Citrate synthase, C-terminal domain
5575556543GHMP kinases N terminal domain
8787977659Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
98111110139879Pyridoxal-phosphate dependent enzyme
1211192123171211126NUDIX domain
5457556441pfkB family carbohydrate kinase
31822162221917128Glycosyl hydrolases family 28
141313114Luciferase-like monooxygenase
2222222216Ribosomal protein L3
2222222216Ribosomal protein L11, RNA binding domain
1514191722161516134Histidine phosphatase superfamily (branch 1)
111112119Thymidylate synthase
311229Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
5455545538Calponin homology (CH) domain
4464465437Glutamine amidotransferases class-II
2122222215Ribosomal protein S15
11'Cold-shock' DNA-binding domain
1232311215Thaumatin family
111121119Fructose-1-6-bisphosphatase, N-terminal domain
1121211110Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
3126452326SRF-type transcription factor (DNA-binding and dimerisation domain)
88911889970GATA zinc finger
3138646157544336384Amino acid permease
33835106341Prolyl oligopeptidase family
2121222214Ribosomal protein L30p/L7e
910131213981084Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5454965442Aconitase family (aconitate hydratase)
1274522225Glycosyl hydrolase family 10
4454335533Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
1113Tetraspanin family
2122221113Ribosomal protein S10p/S20e
53759106449Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
11111117SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
33333103432Polyprenyl synthetase
4545453434Hexokinase
34911979456Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
4455554436Rieske [2Fe-2S] domain
4138Phytochrome region
108101011109876Biotin-requiring enzyme
121111119Phosphofructokinase
2222222216Ribosomal protein S17
1112121110Hydroxymethylglutaryl-coenzyme A reductase
3344533429FGGY family of carbohydrate kinases, N-terminal domain
1111181620191112118Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
8510101198667Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
71581187101985Chromo (CHRromatin Organisation MOdifier) domain
2133222217Phosphatidylinositol-specific phospholipase C, Y domain
3333222220Phosphatidylinositol-specific phospholipase C, X domain
849111178462D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3333332222Malic enzyme, N-terminal domain
21222122146-phosphogluconate dehydrogenase, C-terminal domain
111229322626118155Multicopper oxidase
11101510141411994WW domain
111111219Ribosomal RNA adenine dimethylase
121111119Yeast PIR protein repeat
10698113135122146113116949WD domain, G-beta repeat
7479665549Heavy-metal-associated domain
11Transferrin
3434434328Adenylate kinase
2122232216Phosphoglucomutase/phosphomannomutase, C-terminal domain
2211121212Ribosomal protein S8
111111118Ribosomal protein S11
4444444331LIM domain
11Matrixin
2343323323Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
2223332219chorismate binding enzyme
323333332360s Acidic ribosomal protein
4445455435Prenyltransferase and squalene oxidase repeat
6555557341Protein kinase C terminal domain
111111118Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
7799866759Bromodomain
131115131619139109Acyl-CoA dehydrogenase, C-terminal domain
1515151516151615122Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
2434453328Ribonuclease T2 family
3343333325HSF-type DNA-binding
2322222217SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
91122162012119110Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
8888888763Phosphatidylinositol 3- and 4-kinase
1234342120Transketolase, thiamine diphosphate binding domain
285883337Glycosyl hydrolases family 11
2343343325Inositol monophosphatase family
4344434430Glutaredoxin
4455743335Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
3254566233Iron-containing alcohol dehydrogenase
2222222216Ribosomal protein L10
2432222421KOW motif
1111116Ribosomal protein L34
2122223216RF-1 domain
6244436130Sodium:solute symporter family
111211119Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
5576658547Protein phosphatase 2C
2233223219Nucleotidyl transferase
441389114255Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
5791010115663Fatty acid desaturase
6666666648MutS domain V
111112119Delta-aminolevulinic acid dehydratase
6485654442Arginase family
6666666648MCM P-loop domain
1223212215Squalene/phytoene synthase
98101010711570FHA domain
3258656365755641455AMP-binding enzyme
3364537334G-protein alpha subunit
7888878761HMG (high mobility group) box
1117272225131115141His Kinase A (phospho-acceptor) domain
3333333324Armadillo/beta-catenin-like repeat
2426334633723426294Tetratricopeptide repeat
3454534129Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
9911111111121185BRCA1 C Terminus (BRCT) domain
5599975756Glycosyl transferases group 1
5577875549Glycosyl transferase family 2
2134422220SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
7112415Pectate lyase
114123113ribonuclease
111111118Urease, gamma subunit
6454644437CoA-ligase
826262919464519218Phosphopantetheine attachment site
2234323322Formyl transferase
11910101110101081Metallopeptidase family M24
1810181717141316123Leucine Rich Repeat
33351085191864628478alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
4444444432PB1 domain
2222222216Staphylococcal nuclease homologue
11710101010111079Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
3576444437Zinc finger, ZZ type
2111117HRDC domain
97101010107871CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
3453334429S1 RNA binding domain
11111117HIUase/Transthyretin family
4678743342AhpC/TSA family
4445445636tRNA synthetases class I (W and Y)
212211110UvrD/REP helicase N-terminal domain
5445565539Rhodanese-like domain
2223222116Universal stress protein family
3536946995765731493Acetyltransferase (GNAT) family
21111118SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
99999109771tRNA synthetase class II core domain (G, H, P, S and T)
111111118SpoU rRNA Methylase family
2122222215Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
11111117PDZ domain
65757156354Class II Aldolase and Adducin N-terminal domain
4344444431Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
4455535435Fes/CIP4, and EFC/F-BAR homology domain
3644445535IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4567645441Phospholipase D Active site motif
1221211111Regulator of G protein signaling domain
4444444432GTPase-activator protein for Ras-like GTPase
4445444433RasGEF domain
4445444433RasGEF N-terminal motif
8898988866RhoGAP domain
6557666445RhoGEF domain
3453335329SPRY domain
3333333324RNA polymerase Rpb1, domain 2
2122221113Guanylate kinase
5444445333Gelsolin repeat
61054689957UBA/TS-N domain
1715212123171716147PHD-finger
11Filamin/ABP280 repeat
11111117GGL domain
6666666648HECT-domain (ubiquitin-transferase)
3122231317Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
4665745340Ribonuclease III domain
2232222116Region in Clathrin and VPS
2333323322RanBP1 domain
2222222115PPIC-type PPIASE domain
4253443328Zn-finger in Ran binding protein and others
1915222521181516151Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1143311115Poly(ADP-ribose) polymerase catalytic domain
111111118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
61408375100694940517F-box domain
111111118Elongation factor 1 gamma, conserved domain
4466452435Calpain family cysteine protease
3232332220Copper fist DNA binding domain
5455555539CRAL/TRIO domain
132346324952114203BTB/POZ domain
2165742128Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3344433327Voltage gated chloride channel
32810442134Caspase domain
47171818194996GDSL-like Lipase/Acylhydrolase
111111219Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
1627533141413022261ABC transporter transmembrane region
20123457Integrase core domain
8787796557FAD binding domain
31411107179778Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111112119HAMP domain
2222222216ribosomal L5P family C-terminus
5566675444Insulinase (Peptidase family M16)
3334443327Dehydrogenase E1 component
11111117Lumazine binding domain
6566666647Elongation factor G C-terminus
5454567440HMGL-like
4444444432DnaJ central domain
2333423323Starch binding domain
2223322218Ribosomal protein L1p/L10e family
589121074661Cation transporting ATPase, C-terminus
7910111396873Cation transporter/ATPase, N-terminus
1122211111dUTPase
53541064340Aconitase C-terminal domain
4433343327Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
822302920504919227Acyl transferase domain
111111118Urease beta subunit
3366983543Dihydrodipicolinate synthetase family
2727424442403127280haloacid dehalogenase-like hydrolase
3213612143154Glycosyl hydrolases family 2
107232421271512139Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
1111116Acylphosphatase
112111119Adenylosuccinate synthetase
1211121211Asparaginase, N-terminal
3133222218Peptidase S24-like
111111118Inorganic pyrophosphatase
9111713161091095Glycosyl hydrolases family 16
3433343427Glycosyl hydrolases family 15
781912191011591NADH:flavin oxidoreductase / NADH oxidase family
41535411243-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2143342120Glycosyl hydrolase family 20, catalytic domain
4444444432HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
927472636263421226GMC oxidoreductase
2222242218Asparagine synthase
214151317351017123Fungal cellulose binding domain
6555555541Septin
11212119EF-1 guanine nucleotide exchange domain
112111119Homoserine dehydrogenase
1244835128Flavin-binding monooxygenase-like
3345434329tRNA synthetases class I (E and Q), catalytic domain
2144442122tRNA synthetases class I (R)
4344544331XPG N-terminal domain
81122142723127124Metallo-beta-lactamase superfamily
212141112F5/8 type C domain
2324224625Choline/Carnitine o-acyltransferase
111111118Putative esterase
121111119Ferrochelatase
2222222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1212132113Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
3333333324RNB domain
3511813107562Dioxygenase
2233353223CNH domain
1222332318Diacylglycerol kinase catalytic domain
7786887657Dual specificity phosphatase, catalytic domain
2223223218P21-Rho-binding domain
121011121211111190PX domain
3355643332Ras association (RalGDS/AF-6) domain
6456646441UBX domain
4444444432VHS domain
111111118Phosphoinositide 3-kinase C2
2232232218DAHP synthetase I family
14131313111081092Carbon-nitrogen hyd