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PFAM Domains • Kockovaella imperatae NRRL Y-17943 v1.0
Annotations/GenomesCryne_H99_1Cryne_JEC21_1Diocr1Felpe1Fibin1Kocim1Sirint1Treen1Treme1TotalAnnotation Description
PFAMs
5,7325,7909,5568,2137,4007,1887,8297,6625,56564,935
1112277 transmembrane receptor (rhodopsin family)
313157343736353336330ATPase family associated with various cellular activities (AAA)
343383383539383734371ABC transporter
44544454438ATP synthase alpha/beta family, nucleotide-binding domain
21115EGF-like domain
131319131313131213122Elongation factor Tu GTP binding domain
991277889877Helix-loop-helix DNA-binding domain
89977787769Hsp70 protein
881176766766KH domain
112SH2 domain
222029151414101122157SH3 domain
101219101091010999Actin
1815337323615102Ankyrin repeat
112215PAN domain
881288888876ADP-ribosylation factor family
8811111011912989Eukaryotic aspartyl protease
33333333327Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
111111118Cytochrome c
2211221112Double-stranded RNA binding motif
161622222341582EF hand
224194Fe-4S binding domain
112Fibronectin type III domain
1113Globin
861354365252Glutathione S-transferase, C-terminal domain
22322322119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
65857444447Homeodomain
11Laminin EGF domain
22622232223lactate/malate dehydrogenase, NAD binding domain
447556139760Myosin head (motor domain)
552210912910890Cytochrome P450
8996166102991021009596945Protein kinase domain
111016111212111311107Pyridine nucleotide-disulphide oxidoreductase
232531262525282524232Ras family
1010171012914129103Response regulator receiver domain
11121133215RNase H
626581585552535459539RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
81220Reverse transcriptase (RNA-dependent DNA polymerase)
11211111110Copper/zinc superoxide dismutase (SODC)
11211111110Iron/manganese superoxide dismutases, alpha-hairpin domain
33633633333Subtilase family
6257742226578798825750Sugar (and other) transporter
81012999109884Thioredoxin
44744444439Tubulin/FtsZ family, GTPase domain
2619von Willebrand factor type A domain
2426391098101128165Zinc finger, C2H2 type
323660871210637208Zinc finger, C3HC4 type (RING finger)
11102059879150229Zinc knuckle
22323322221Protein-tyrosine phosphatase
353485575540517234463short chain dehydrogenase
252854253017252717248Zinc-binding dehydrogenase
33524233328Thiolase, N-terminal domain
11211111110Beta-ketoacyl synthase, N-terminal domain
357222224292Fe-2S iron-sulfur cluster binding domain
23111111112Enolase, C-terminal TIM barrel domain
1326Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
7711787109874Glutamine amidotransferase class-I
1010131010101081091TCP-1/cpn60 chaperonin family
112ATP synthase A chain
22272532227Glutamine synthetase, catalytic domain
1111111119Triosephosphate isomerase
10101616141516159121E1-E2 ATPase
88161011911101194Core histone H2A/H2B/H3/H4
9112013111210129107Alpha amylase, catalytic domain
33433233327Phorbol esters/diacylglycerol binding domain (C1 domain)
991546456866Bacterial transferase hexapeptide (six repeats)
33634444334tRNA synthetases class I (I, L, M and V)
99141111101110994Cyclin, N-terminal domain
456118867560Carboxylesterase family
44644444438DNA polymerase family B
52333333328ATP synthase subunit C
12211119Legume lectin domain
22422232221Peroxidase
17881037255Beta-lactamase
22222111C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
192032191521161818178Calcineurin-like phosphoesterase
551116151414156101Cellulase (glycosyl hydrolase family 5)
66955666554tRNA synthetases class II (D, K and N)
343457353736363433336Mitochondrial carrier protein
161522201716182116161Aminotransferase class I and II
771144433649Phosphoribosyl transferase domain
131318131212121212117Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
12111111110Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22322222219Ribosomal protein S12/S23
121111119Chaperonin 10 Kd subunit
121217111010111112106C2 domain
1616211091011817118PH domain
79971291211581bZIP transcription factor
14141517161217159129Aldehyde dehydrogenase family
7777101146818213513653888Fungal Zn(2)-Cys(6) binuclear cluster domain
192032201918182117184Cytochrome b5-like Heme/Steroid binding domain
771085577561Oxidoreductase NAD-binding domain
212135202322222319206SNF2 family N-terminal domain
21422222219Ribosomal protein S7p/S5e
191928192019201820182Ubiquitin-conjugating enzyme
781196686566Isocitrate/isopropylmalate dehydrogenase
22322221218Ribosomal Proteins L2, RNA binding domain
22422222220Hsp90 protein
22322222219Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11211118Dihydrofolate reductase
21623233325Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
121111310Cupin
12211111111Annexin
22Eukaryotic-type carbonic anhydrase
335333333292-oxoacid dehydrogenases acyltransferase (catalytic domain)
45332152126Catalase
22211111112Disintegrin
3118877852UDP-glucoronosyl and UDP-glucosyl transferase
891010116714681Aminotransferase class-III
22422222220Ribosomal protein S19
11211111110DNA gyrase B
22322222219Thiamine pyrophosphate enzyme, central domain
33563365337Lyase
22222122217Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
213Sodium:neurotransmitter symporter family
11211111110Adenylate and Guanylate cyclase catalytic domain
11211111110ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
11211111110Indole-3-glycerol phosphate synthase
12111121111Pyruvate kinase, barrel domain
1010131010121091296Kinesin motor domain
232635252422252425229DnaJ domain
141419141414141414131Proteasome subunit
11753143126Major intrinsic protein
11211111110ATP synthase
321322114Glycosyl hydrolase family 1
11111111193'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
1111111119Profilin
11122222114Ribosomal protein L22p/L17e
22322222219Ribosomal protein L14p/L23e
12141711912121110108Ubiquitin family
56855455548Cofilin/tropomyosin-type actin-binding protein
1121111111014-3-3 protein
131139Alkaline phosphatase
1111111119Zinc carboxypeptidase
211948373335282923273Aldo/keto reductase family
7812545461162Myb-like DNA-binding domain
65745445444Forkhead domain
1126123117Glycosyl hydrolases family 32 N-terminal domain
11122222114Ribosomal protein L16p/L10e
22522222221Ribosomal protein S14p/S29e
33733333331FKBP-type peptidyl-prolyl cis-trans isomerase
22322222219Glutathione peroxidase
11215
11Dehydrin
55463333436Flavodoxin
11211111110Calreticulin family
56865565450Aminotransferase class-V
22322222219Ribonucleotide reductase, small chain
414062444443464937406DEAD/DEAH box helicase
7172109627165707265657Helicase conserved C-terminal domain
11211111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22421222219Ribosomal protein L23
11211111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22211111213Ribosomal protein L5
34845555544Pyridoxal-dependent decarboxylase conserved domain
11122122113Citrate synthase, C-terminal domain
57854555448GHMP kinases N terminal domain
65655577551Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
8911967108674Pyridoxal-phosphate dependent enzyme
91022101210121010105NUDIX domain
651156676456pfkB family carbohydrate kinase
1166413325Glycosyl hydrolases family 28
112Luciferase-like monooxygenase
22322221218Ribosomal protein L3
22422222220Ribosomal protein L11, RNA binding domain
99241212111599110Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
11Lipoxygenase
44544454438ATP synthase alpha/beta chain, C terminal domain
34534343433Calponin homology (CH) domain
44922123431Glutamine amidotransferases class-II
22322212218Ribosomal protein S15
2232222318Thaumatin family
11211111110Fructose-1-6-bisphosphatase, N-terminal domain
1111111119Ribonucleotide reductase, all-alpha domain
22322222219Ribosomal protein S2
22322222219SRF-type transcription factor (DNA-binding and dimerisation domain)
1210161210912109100GATA zinc finger
161417169717115112Amino acid permease
454105764247Prolyl oligopeptidase family
11322222217Ribosomal protein L30p/L7e
567105776558Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
55555444441Aconitase family (aconitate hydratase)
11114Glycosyl hydrolase family 10
1111111119Glycosyl hydrolases family 17
22222222117Ribosomal protein S5, N-terminal domain
22322122117Nucleoside diphosphate kinase
1112222112Tetraspanin family
22222222117Ribosomal protein S10p/S20e
22322333222Arrestin (or S-antigen), N-terminal domain
11211111110Phosphoglucose isomerase
11211111110Carbohydrate phosphorylase
1111111119SecY translocase
11211111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222218Ribosomal protein L6
33534333330Polyprenyl synthetase
22322222219Hexokinase
33965655345Dynamin family
11211111110Transcription factor TFIID (or TATA-binding protein, TBP)
33523232427Rieske [2Fe-2S] domain
1111111119Phytochrome region
213Proton-conducting membrane transporter
871077797668Biotin-requiring enzyme
11211111110Phosphofructokinase
22322222219Ribosomal protein S17
1111111119Hydroxymethylglutaryl-coenzyme A reductase
34533333229FGGY family of carbohydrate kinases, N-terminal domain
213Sodium:dicarboxylate symporter family
551076455451Enoyl-CoA hydratase/isomerase
22322222219Ribosomal protein S9/S16
23322222119Transcription factor TFIIB repeat
1010556447455Cytidine and deoxycytidylate deaminase zinc-binding region
11211111110Molybdopterin oxidoreductase
8888977122794Chromo (CHRromatin Organisation MOdifier) domain
11211111110Phosphatidylinositol-specific phospholipase C, Y domain
21421311116Phosphatidylinositol-specific phospholipase C, X domain
91010121171113992D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33433333227Malic enzyme, N-terminal domain
112222222166-phosphogluconate dehydrogenase, C-terminal domain
55152514432Multicopper oxidase
71314991087885WW domain
11222222115Ribosomal RNA adenine dimethylase
10210415892100941019197939WD domain, G-beta repeat
11644435331Heavy-metal-associated domain
33533333329Adenylate kinase
11322222217Phosphoglucomutase/phosphomannomutase, C-terminal domain
11122222114Ribosomal protein S8
11121222113Ribosomal protein S11
44845665446LIM domain
11Matrixin
11122434220Regulator of chromosome condensation (RCC1) repeat
22222222218Ribosomal protein S13/S18
22422222220chorismate binding enzyme
3333333332760s Acidic ribosomal protein
44743442436Prenyltransferase and squalene oxidase repeat
44933333436Protein kinase C terminal domain
11311111111Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
101016101011119996Bromodomain
78757577760Acyl-CoA dehydrogenase, C-terminal domain
141524161517161418149Ubiquitin carboxyl-terminal hydrolase
11211111110Ribosomal protein L36
2111117Ribonuclease T2 family
44956257547HSF-type DNA-binding
22422222220SRP54-type protein, GTPase domain
1111111119Urease alpha-subunit, N-terminal domain
77644557348Serine carboxypeptidase
881288888876Phosphatidylinositol 3- and 4-kinase
55543324233Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
33823233229Inositol monophosphatase family
46654444441Glutaredoxin
11231142116Isocitrate lyase family
11211111110Serine hydroxymethyltransferase
11112111110Iron-containing alcohol dehydrogenase
22222222218Ribosomal protein L10
44644434538KOW motif
11211111110Ribosomal protein L34
1111111119Ribosomal protein L33
32533333328RF-1 domain
1122211212Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
551266685558Protein phosphatase 2C
22422432223Nucleotidyl transferase
22533224225Carbonic anhydrase
12112213215Phosphoribulokinase / Uridine kinase family
44655565545Fatty acid desaturase
661176666660MutS domain V
11211111110Delta-aminolevulinic acid dehydratase
32122125119Arginase family
66966666657MCM P-loop domain
12333333223Squalene/phytoene synthase
77109710108775FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
910161610131298103AMP-binding enzyme
33533333329G-protein alpha subunit
77865566656HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
7714796128777His Kinase A (phospho-acceptor) domain
22422323222Armadillo/beta-catenin-like repeat
222325101012141016142Tetratricopeptide repeat
33833323331Ion transport protein
11211111110DNA gyrase/topoisomerase IV, subunit A
7615668771072BRCA1 C Terminus (BRCT) domain
771166666762Glycosyl transferases group 1
22421222219Glycosyl transferase family 2
111216SAM domain (Sterile alpha motif)
22211111112linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
1111111119Urease, gamma subunit
33733233330CoA-ligase
23854553237Phosphopantetheine attachment site
33533333329Formyl transferase
101013119111010993Metallopeptidase family M24
1719271121986Leucine Rich Repeat
91023645431276alpha/beta hydrolase fold
33433333328RNA polymerase Rpb2, domain 6
34644434335PB1 domain
22322222219Staphylococcal nuclease homologue
9101812131213138108Rab-GTPase-TBC domain
11211111110Tudor domain
1111111119WH1 domain
34444444435Zinc finger, ZZ type
22422222220HRDC domain
771156666761CBS domain
22322221218Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
1111111119Clp protease
34744444438S1 RNA binding domain
11111117HIUase/Transthyretin family
33544434434AhpC/TSA family
33544444435tRNA synthetases class I (W and Y)
112111119UvrD/REP helicase N-terminal domain
44876598354Rhodanese-like domain
23322222220Universal stress protein family
181358171624161817197Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22422222220AIR synthase related protein, N-terminal domain
66855555651tRNA synthetase class II core domain (G, H, P, S and T)
123Phage integrase family
22422222220Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
214115158138Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
12334243224Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55655543442Fes/CIP4, and EFC/F-BAR homology domain
76322332331IQ calmodulin-binding motif
22322221218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
45611121425Phospholipase D Active site motif
11134444123Regulator of G protein signaling domain
32334334429GTPase-activator protein for Ras-like GTPase
33533333329RasGEF domain
32333333326RasGEF N-terminal motif
91118111110111111103RhoGAP domain
141217131213131212118RhoGEF domain
33533323227SPRY domain
33433333328RNA polymerase Rpb1, domain 2
11211111110Guanylate kinase
34422222324Gelsolin repeat
8101497445768UBA/TS-N domain
152021151313161313139PHD-finger
212222213GGL domain
44644444438HECT-domain (ubiquitin-transferase)
222118Helix-hairpin-helix motif
11211111110MSP (Major sperm protein) domain
551144351846Ribonuclease III domain
22235454229Region in Clathrin and VPS
33423333226RanBP1 domain
1111111119PPIC-type PPIASE domain
1422112316Zn-finger in Ran binding protein and others
1917251281010914124Zinc finger C-x8-C-x5-C-x3-H type (and similar)
211116Poly(ADP-ribose) polymerase catalytic domain
1111111119Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
20183005448319381F-box domain
1111111119Elongation factor 1 gamma, conserved domain
111115Calpain family cysteine protease
11211111110Copper fist DNA binding domain
54955646549CRAL/TRIO domain
511656793860BTB/POZ domain
551781310641179Ricin-type beta-trefoil lectin domain
11211111110Inhibitor of Apoptosis domain
22322222219Voltage gated chloride channel
22423222221Caspase domain
33864532236GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
11211111110POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
151441191721171819181ABC transporter transmembrane region
341320Integrase core domain
33563333332FAD binding domain
11Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111111119HAMP domain
22422222220ribosomal L5P family C-terminus
55755555547Insulinase (Peptidase family M16)
33344443432Dehydrogenase E1 component
1111111119Lumazine binding domain
55855555548Elongation factor G C-terminus
44644444438HMGL-like
46844444442DnaJ central domain
11Starch binding domain
22233333223Ribosomal protein L1p/L10e family
44864786350Cation transporting ATPase, C-terminus
661076787562Cation transporter/ATPase, N-terminus
22222222218dUTPase
55555444441Aconitase C-terminal domain
34433333329Amino acid kinase family
11211111110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
11211111110Acyl transferase domain
1111111119Urease beta subunit
4427