PFAM Domains • Yarrowia lipolytica FKP355 v1.0
Annotations/GenomesArtfe1_2Hypbu1Kurca1Nadfu1Spola1Yarli1Yarlip1TotalAnnotation Description
PFAMs
4,7415,3496,6555,3246,2005,7376,77540,781
33333337323330231ATPase family associated with various cellular activities (AAA)
22292926243232194ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
1314131414141496Elongation factor Tu GTP binding domain
10998129764Helix-loop-helix DNA-binding domain
42422216Hsp20/alpha crystallin family
99810711357Hsp70 protein
87691011859KH domain
1113SH2 domain
18231521102013120SH3 domain
1110111111101074Actin
1217415420476Ankyrin repeat
678777648ADP-ribosylation factor family
30107643740134Eukaryotic aspartyl protease
333434424Cyclic nucleotide-binding domain
11121118Cytochrome c
321222113Double-stranded RNA binding motif
151315217466EF hand
111254Fe-4S binding domain
111216Fibronectin type III domain
221213112Globin
4554110837Glutathione S-transferase, C-terminal domain
221221111Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
542635530Homeodomain
11Laminin EGF domain
233222216lactate/malate dehydrogenase, NAD binding domain
313535525Myosin head (motor domain)
39448171762Cytochrome P450
97959898938386650Protein kinase domain
6711955750Pyridine nucleotide-disulphide oxidoreductase
22202224232424159Ras family
576947745Response regulator receiver domain
1111121329RNase H
47474858575551363RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
2020Reverse transcriptase (RNA-dependent DNA polymerase)
222112212Copper/zinc superoxide dismutase (SODC)
121112210Iron/manganese superoxide dismutases, alpha-hairpin domain
56354161756Subtilase family
18325514202637202Sugar (and other) transporter
888999960Thioredoxin
11125Trypsin
333444425Tubulin/FtsZ family, GTPase domain
3238194112349185Zinc finger, C2H2 type
30352312363139Zinc finger, C3HC4 type (RING finger)
323336323Zinc knuckle
232222215Protein-tyrosine phosphatase
14313020202926170short chain dehydrogenase
12231815192010117Zinc-binding dehydrogenase
222343420Thiolase, N-terminal domain
222222214Beta-ketoacyl synthase, N-terminal domain
3323231172Fe-2S iron-sulfur cluster binding domain
13111119Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
777888752Glutamine amidotransferase class-I
1011101010101071TCP-1/cpn60 chaperonin family
211212211Glutamine synthetase, catalytic domain
11111229Triosephosphate isomerase
71011111591477E1-E2 ATPase
12118138101072Core histone H2A/H2B/H3/H4
131411112Alpha amylase, catalytic domain
11111117Phorbol esters/diacylglycerol binding domain (C1 domain)
556656235Bacterial transferase hexapeptide (six repeats)
435453428tRNA synthetases class I (I, L, M and V)
11111010108969Cyclin, N-terminal domain
4314416Carboxylesterase family
444444428DNA polymerase family B
333333321ATP synthase subunit C
222233317Peroxidase
12323314Beta-lactamase
19181718173230151Calcineurin-like phosphoesterase
435333324Cellulase (glycosyl hydrolase family 5)
666666642tRNA synthetases class II (D, K and N)
31333238343937244Mitochondrial carrier protein
1014161112141491Aminotransferase class I and II
10861048450Phosphoribosyl transferase domain
79101212101171Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222322215Ribosomal protein S4/S9 N-terminal domain
222322215Ribosomal protein S12/S23
12227Bacterial regulatory helix-turn-helix proteins, AraC family
11121118Chaperonin 10 Kd subunit
9109998660C2 domain
917121511181193PH domain
646877846bZIP transcription factor
71114910131579Aldehyde dehydrogenase family
48779439565151416Fungal Zn(2)-Cys(6) binuclear cluster domain
1314121315151496Cytochrome b5-like Heme/Steroid binding domain
11Oxidoreductase molybdopterin binding domain
687797650Oxidoreductase NAD-binding domain
17181918181920129SNF2 family N-terminal domain
222322215Ribosomal protein S7p/S5e
1213131513161698Ubiquitin-conjugating enzyme
665665539Isocitrate/isopropylmalate dehydrogenase
232322216Ribosomal Proteins L2, RNA binding domain
11121118Hsp90 protein
232222215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
342312217Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
1113Annexin
2223233172-oxoacid dehydrogenases acyltransferase (catalytic domain)
121223314Catalase
11114Disintegrin
11114UDP-glucoronosyl and UDP-glucosyl transferase
488846644Aminotransferase class-III
322322216Ribosomal protein S19
11111117DNA gyrase B
435464430Thiamine pyrophosphate enzyme, central domain
443333323Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11121118Adenylate and Guanylate cyclase catalytic domain
11121118ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11122119Pyruvate kinase, barrel domain
6761069953Kinesin motor domain
23232325243126175DnaJ domain
1414141414141498Proteasome subunit
111133313Major intrinsic protein
11111117ATP synthase
134Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
212222213Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
7771199959Ubiquitin family
444243425Cofilin/tropomyosin-type actin-binding protein
11122221114-3-3 protein
1111116Alkaline phosphatase
11111117Zinc carboxypeptidase
8162381417692Aldo/keto reductase family
1213914414571Myb-like DNA-binding domain
333333321Forkhead domain
13116Glycosyl hydrolases family 32 N-terminal domain
112121210Ribosomal protein L16p/L10e
222321214Ribosomal protein S14p/S29e
333333321FKBP-type peptidyl-prolyl cis-trans isomerase
221211110Glutathione peroxidase
11114
5747510846Flavodoxin
11121118Calreticulin family
656466639Aminotransferase class-V
21111118Ribonucleotide reductase, small chain
33323936333438245DEAD/DEAH box helicase
55565859536259402Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
1111127Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112221110Ribosomal protein L5
133333319Pyridoxal-dependent decarboxylase conserved domain
211332315Citrate synthase, C-terminal domain
454545532GHMP kinases N terminal domain
555557739Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
687869953Pyridoxal-phosphate dependent enzyme
8871089959NUDIX domain
444444428pfkB family carbohydrate kinase
11Glycosyl hydrolases family 28
66Luciferase-like monooxygenase
222222214Ribosomal protein L3
222322215Ribosomal protein L11, RNA binding domain
1116131312101085Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
443545530Calponin homology (CH) domain
552635329Glutamine amidotransferases class-II
222232215Ribosomal protein S15
11111117Fructose-1-6-bisphosphatase, N-terminal domain
122122212Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
211222212SRF-type transcription factor (DNA-binding and dimerisation domain)
8991077757GATA zinc finger
13341323103117141Amino acid permease
223221113Prolyl oligopeptidase family
333432220Ribosomal protein L30p/L7e
665834436Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444428Aconitase family (aconitate hydratase)
624334325Glycosyl hydrolases family 17
222222113Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
212221212Ribosomal protein S10p/S20e
266374533Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
122222213SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
323322217Ribosomal protein L6
333333321Polyprenyl synthetase
334423322Hexokinase
334454528Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
122121110Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
676779850Biotin-requiring enzyme
222321113Phosphofructokinase
222322215Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
334333322FGGY family of carbohydrate kinases, N-terminal domain
4334410937Enoyl-CoA hydratase/isomerase
222322215Ribosomal protein S9/S16
223222215Transcription factor TFIIB repeat
667666643Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
222222214Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
112121210Phosphatidylinositol-specific phospholipase C, X domain
4464814343D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11111117Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
232213316Multicopper oxidase
4771066545WW domain
222222214Ribosomal RNA adenine dimethylase
5238725Yeast PIR protein repeat
859086104929499650WD domain, G-beta repeat
234344424Heavy-metal-associated domain
333333321Adenylate kinase
223233318Phosphoglucomutase/phosphomannomutase, C-terminal domain
123222315Ribosomal protein S8
11121118Ribosomal protein S11
533324424LIM domain
112231414Regulator of chromosome condensation (RCC1) repeat
222422216Ribosomal protein S13/S18
222222214chorismate binding enzyme
55554443260s Acidic ribosomal protein
443444326Prenyltransferase and squalene oxidase repeat
774857442Protein kinase C terminal domain
11111117Single-strand binding protein family
11122119S-adenosylmethionine synthetase, N-terminal domain
10981189964Bromodomain
156111033Acyl-CoA dehydrogenase, C-terminal domain
1315141312141394Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
321112212Ribonuclease T2 family
444443326HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
43333101036Serine carboxypeptidase
987788956Phosphatidylinositol 3- and 4-kinase
123221213Transketolase, thiamine diphosphate binding domain
112122211Inositol monophosphatase family
464744433Glutaredoxin
211222212Isocitrate lyase family
222222214Serine hydroxymethyltransferase
1113Iron-containing alcohol dehydrogenase
223332217Ribosomal protein L10
351743225KOW motif
11111117Ribosomal protein L34
232232317RF-1 domain
445125627Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11211118IMP dehydrogenase / GMP reductase domain
11121118Glucose-6-phosphate dehydrogenase, NAD binding domain
666856643Protein phosphatase 2C
133343320Nucleotidyl transferase
11112118Carbonic anhydrase
222231517Phosphoribulokinase / Uridine kinase family
565544433Fatty acid desaturase
454444429MutS domain V
11111117Delta-aminolevulinic acid dehydratase
233122215Arginase family
666666642MCM P-loop domain
112131211Squalene/phytoene synthase
679877852FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
9981113181886AMP-binding enzyme
222222214G-protein alpha subunit
544668841HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
233714424His Kinase A (phospho-acceptor) domain
422332218Armadillo/beta-catenin-like repeat
1715132292210108Tetratricopeptide repeat
12121119Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
8759310951BRCA1 C Terminus (BRCT) domain
443435427Glycosyl transferases group 1
222222214Glycosyl transferase family 2
111227SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
222333318CoA-ligase
333233320Phosphopantetheine attachment site
222222214Formyl transferase
789897856Metallopeptidase family M24
1525316110171Leucine Rich Repeat
1423511717582alpha/beta hydrolase fold
333433322RNA polymerase Rpb2, domain 6
323213216PB1 domain
222222214Staphylococcal nuclease homologue
6791013111167Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
313123316Zinc finger, ZZ type
11111117HRDC domain
8871189859CBS domain
222222214Ribosomal protein L13
112321212Ribosomal protein L4/L1 family
11114Clp protease
334454326S1 RNA binding domain
11111117HIUase/Transthyretin family
344544428AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
222212112UvrD/REP helicase N-terminal domain
5365761042Rhodanese-like domain
132212314Universal stress protein family
1112918102621107Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
887878753tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
122222213Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
11114PDZ domain
123322215Class II Aldolase and Adducin N-terminal domain
143434524Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
343555631Fes/CIP4, and EFC/F-BAR homology domain
212324216IQ calmodulin-binding motif
122222213Phosphoinositide 3-kinase family, accessory domain (PIK domain)
221222112Phospholipase D Active site motif
1515416Regulator of G protein signaling domain
533534427GTPase-activator protein for Ras-like GTPase
344444427RasGEF domain
343434425RasGEF N-terminal motif
897119101064RhoGAP domain
323235523RhoGEF domain
432544426SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
443344325Gelsolin repeat
486659543UBA/TS-N domain
111311148141182PHD-finger
111115GGL domain
555576639HECT-domain (ubiquitin-transferase)
112Helix-hairpin-helix motif
11111229MSP (Major sperm protein) domain
241132114Ribonuclease III domain
223242520Region in Clathrin and VPS
233323319RanBP1 domain
12111118PPIC-type PPIASE domain
11111117Zn-finger in Ran binding protein and others
78714910762Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11114B-box zinc finger
112Poly(ADP-ribose) polymerase catalytic domain
11Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
10173154320108F-box domain
111212210Elongation factor 1 gamma, conserved domain
111115Calpain family cysteine protease
222322215Copper fist DNA binding domain
565447738CRAL/TRIO domain
11423152046BTB/POZ domain
11111117Inhibitor of Apoptosis domain
323323319Voltage gated chloride channel
132211111Caspase domain
111227GDSL-like Lipase/Acylhydrolase
111212210Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
123Seripauperin and TIP1 family
71511127161684ABC transporter transmembrane region
1010Integrase core domain
233333320FAD binding domain
112Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1113118HAMP domain
222322215ribosomal L5P family C-terminus
788787752Insulinase (Peptidase family M16)
222323317Dehydrogenase E1 component
11111117Lumazine binding domain
666767745Elongation factor G C-terminus
455544330HMGL-like
454444429DnaJ central domain
224242420Ribosomal protein L1p/L10e family
362444528Cation transporting ATPase, C-terminus
553665535Cation transporter/ATPase, N-terminus
1111116dUTPase
444444428Aconitase C-terminal domain
333443323Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
112122211Acyl transferase domain
114118Dihydrodipicolinate synthetase family
112281911219101haloacid dehalogenase-like hydrolase
314Glycosyl hydrolases family 2
2131323336Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11111117Adenylosuccinate synthetase
21115Asparaginase, N-terminal
322333319Peptidase S24-like
221222213Inorganic pyrophosphatase
742223323Glycosyl hydrolases family 16
11111117Glycosyl hydrolases family 15
365246834NADH:flavin oxidoreductase / NADH oxidase family
21143-hydroxyacyl-CoA dehydrogenase, C-terminal domain
112Glycosyl hydrolase family 20, catalytic domain
233133318HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
31116GMC oxidoreductase
222222214Asparagine synthase
1113Fungal cellulose binding domain
777497950Septin
11121118EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
53331318Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
335334324XPG N-terminal domain
322223317Metallo-beta-lactamase superfamily
1113F5/8 type C domain
333242219Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
333433322Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
434434426RNB domain
123Dioxygenase
324242320CNH domain
212122212Diacylglycerol kinase catalytic domain
776876748Dual specificity phosphatase, catalytic domain
112122211P21-Rho-binding domain
1314131314131292PX domain
222313215Ras association (RalGDS/AF-6) domain
355356532UBX domain
343544427VHS domain
1111116Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
469454436Carbon-nitrogen hydrolase
11111117Prephenate dehydratase
531426526Syntaxin
664735334Pumilio-family RNA binding repeat
576676542Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222322215Glycoprotease family
11111117Histidinol dehydrogenase
222222214impB/mucB/samB family
11114
11121118Ribosomal L15
113231314Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11114Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1121117Ribosomal L39 protein
11121118Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
415Ring hydroxylating alpha subunit (catalytic domain)
331322216RNA pseudouridylate synthase
355555533Histone deacetylase domain
12227721POT family
322111111PWWP domain
8971110101166SET domain
11111117Isochorismatase family
112132212Permease family
11121118Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
345344427XPG I-region
1113DNA photolyase
11Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
1113Zinc dependent phospholipase C
111115Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
122122212Acyl CoA binding protein
344444427Cullin family
25233116FAD binding domain
243434424EamA-like transporter family
22228
887888855ThiF family
12111118Ribosomal family S4e
422132216Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
243256628Ammonium Transporter Family
343343323Sulfate permease family
1111116MATH domain
11111117Dehydratase family
114211111Transaldolase/Fructose-6-phosphate aldolase
1113Mechanosensitive ion channel
112121210GTP cyclohydrolase II
111111173,4-dihydroxy-2-butanone 4-phosphate synthase
455555534Adaptor complexes medium subunit family
555666639Exonuclease
222221112Dipeptidyl peptidase IV (DPP IV) N-terminal region
139116627Glycosyl hydrolase family 3 N terminal domain
1121117Ribosomal protein L44
2114Sodium:sulfate symporter transmembrane region
221131111DNA-dependent RNA polymerase
112FAD binding domain in molybdopterin dehydrogenase
11111117Glycosyl transferase family 4
11111117HCO3- transporter family
222