PFAM Domains • Alternaria alternata MPI-PUGE-AT-0064 v1.0
Annotations/GenomesAltal1Altalt1Altbr1CocheC5_3Decga1Pyrtr1Pyrtt1Settur1TotalAnnotation Description
PFAMs
9,61111,6725,9039,2957,9316,7138,5168,65768,298
1127 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
5049324144394638339ATPase family associated with various cellular activities (AAA)
4141374236404038315ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1416131414121314110Elongation factor Tu GTP binding domain
121411131211121499Helix-loop-helix DNA-binding domain
3313312319Hsp20/alpha crystallin family
71168777760Hsp70 protein
7688998863KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
2314212222242323172SH3 domain
1010910107101076Actin
6519358871585254442Ankyrin repeat
4148422429PAN domain
7777777756ADP-ribosylation factor family
11148229121313102Eukaryotic aspartyl protease
4424444430Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
22Cytochrome b/b6/petB
111111118Cytochrome c
1121121211Double-stranded RNA binding motif
172181815191717123EF hand
121112194Fe-4S binding domain
3124232219Fibronectin type III domain
111111118Globin
1614109764874Glutathione S-transferase, C-terminal domain
111111118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
116589910866Homeodomain
4444333429lactate/malate dehydrogenase, NAD binding domain
4465455437Myosin head (motor domain)
12412663156678798132853Cytochrome P450
12713384115130104112107912Protein kinase domain
141291713121415106Pyridine nucleotide-disulphide oxidoreductase
2627222624222325195Ras family
2727212723242625200Response regulator receiver domain
2121045327RNase H
5650495861585659447RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
32629Reverse transcriptase (RNA-dependent DNA polymerase)
2412222217Copper/zinc superoxide dismutase (SODC)
2222222216Iron/manganese superoxide dismutases, alpha-hairpin domain
171771212991396Subtilase family
8997747052886264596Sugar (and other) transporter
1112101310991286Thioredoxin
5452222325Trypsin
4444444432Tubulin/FtsZ family, GTPase domain
3115334424von Willebrand factor type A domain
8227566865705568491Zinc finger, C2H2 type
556355465436056374Zinc finger, C3HC4 type (RING finger)
521612102320391Zinc knuckle
2222222216Protein-tyrosine phosphatase
16915798132921131131321,006short chain dehydrogenase
7162526944606367488Zinc-binding dehydrogenase
6697676653Thiolase, N-terminal domain
1413102814232632160Beta-ketoacyl synthase, N-terminal domain
64464666422Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
111111118Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
81078769964Glutamine amidotransferase class-I
101010101010111081TCP-1/cpn60 chaperonin family
4333333325Glutamine synthetase, catalytic domain
2222222216Triosephosphate isomerase
1823131916161517137E1-E2 ATPase
885118317987Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
6666667649Alpha amylase, catalytic domain
2121222214Phorbol esters/diacylglycerol binding domain (C1 domain)
8768788860Bacterial transferase hexapeptide (six repeats)
4573385439tRNA synthetases class I (I, L, M and V)
7859787960Cyclin, N-terminal domain
3537242917222223209Carboxylesterase family
4444444432DNA polymerase family B
4434444431ATP synthase subunit C
11Legume lectin domain
7878577756Peroxidase
141487478567Beta-lactamase
3322333322C-5 cytosine-specific DNA methylase
2926232827262926214Calcineurin-like phosphoesterase
13191091069783Cellulase (glycosyl hydrolase family 5)
8877777758tRNA synthetases class II (D, K and N)
3938364139404141315Mitochondrial carrier protein
19217171491516118Aminotransferase class I and II
95681099965Phosphoribosyl transferase domain
121211131212121296Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
1121218Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
131011121211121293C2 domain
1810162218182019141PH domain
101669889874bZIP transcription factor
2224202715212219170Aldehyde dehydrogenase family
24021479192147921071801,251Fungal Zn(2)-Cys(6) binuclear cluster domain
2423182420222426181Cytochrome b5-like Heme/Steroid binding domain
4434433328Oxidoreductase molybdopterin binding domain
161591813101616113Oxidoreductase NAD-binding domain
2727212525262624201SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2725212226212525192Ubiquitin-conjugating enzyme
7777677654Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2112222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
149910965567Chitin recognition protein
4431322322Cysteine-rich secretory protein family
112111119Ribosomal protein S3, C-terminal domain
7734366642Cupin
2212222215Annexin
2211111110Eukaryotic-type carbonic anhydrase
11111117Chalcone and stilbene synthases, N-terminal domain
33243333242-oxoacid dehydrogenases acyltransferase (catalytic domain)
6844455440Catalase
111111118Disintegrin
279UDP-glucoronosyl and UDP-glucosyl transferase
99610789866Aminotransferase class-III
2212222215Ribosomal protein S19
111111118DNA gyrase B
4446534434Thiamine pyrophosphate enzyme, central domain
4444444432Lyase
2212222215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
3311232318Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
112Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
99101181010976Kinesin motor domain
3434302935323031255DnaJ domain
1414121414141414110Proteasome subunit
9977977863Major intrinsic protein
111111118ATP synthase
3323133321Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
111211119Profilin
1221111110Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
121010111211121189Ubiquitin family
5525525534Cofilin/tropomyosin-type actin-binding protein
233222221814-3-3 protein
6356445639Alkaline phosphatase
99108477862Zinc carboxypeptidase
3740222525213227229Aldo/keto reductase family
1310111516141315107Myb-like DNA-binding domain
4424444430Forkhead domain
4323133322Glycosyl hydrolases family 32 N-terminal domain
121111119Ribosomal protein L16p/L10e
3313213319Ribosomal protein S14p/S29e
5555555540FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
11111117
8769677858Flavodoxin
123Protamine P1
11111117Calreticulin family
2123812961011100Common central domain of tyrosinase
8938838956Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
4546443941524741355DEAD/DEAH box helicase
7874657773778073597Helicase conserved C-terminal domain
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2122222215Ribosomal protein L5
6666666648Pyridoxal-dependent decarboxylase conserved domain
2323322219Citrate synthase, C-terminal domain
5555555540GHMP kinases N terminal domain
7777667754Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
1112814910141189Pyridoxal-phosphate dependent enzyme
1617111615141316118NUDIX domain
5555455539pfkB family carbohydrate kinase
8865365647Glycosyl hydrolases family 28
1211117Luciferase-like monooxygenase
2232222217Ribosomal protein L3
2212212214Ribosomal protein L11, RNA binding domain
1515101514101312104Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
1135Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
5555545438Calponin homology (CH) domain
5167455538Glutamine amidotransferases class-II
2213222216Ribosomal protein S15
111111118Thaumatin family
2222222216Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2223222217Ribosomal protein S2
2122223216SRF-type transcription factor (DNA-binding and dimerisation domain)
7657656648GATA zinc finger
4518223927323331247Amino acid permease
6928426643Prolyl oligopeptidase family
3323322321Ribosomal protein L30p/L7e
12126121010121286Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5544445435Aconitase family (aconitate hydratase)
7755444541Glycosyl hydrolase family 10
3212323319Glycosyl hydrolases family 17
2222212215Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
1111127Tetraspanin family
1221221112Ribosomal protein S10p/S20e
5734544436Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
7758455344Polyprenyl synthetase
5554555438Hexokinase
3847795952Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
11RTX calcium-binding nonapeptide repeat (4 copies)
8745655545Rieske [2Fe-2S] domain
123Phytochrome region
77Proton-conducting membrane transporter
99611899970Biotin-requiring enzyme
111111118Phosphofructokinase
2222122215Ribosomal protein S17
111111129Hydroxymethylglutaryl-coenzyme A reductase
3333333324FGGY family of carbohydrate kinases, N-terminal domain
111111118Sodium:dicarboxylate symporter family
131381279101082Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
6656665646Cytidine and deoxycytidylate deaminase zinc-binding region
1121211110Molybdopterin oxidoreductase
55457212848Chromo (CHRromatin Organisation MOdifier) domain
3323333323Phosphatidylinositol-specific phospholipase C, Y domain
3433443327Phosphatidylinositol-specific phospholipase C, X domain
1010998781172D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2212222215Malic enzyme, N-terminal domain
22122122146-phosphogluconate dehydrogenase, C-terminal domain
910512798868Multicopper oxidase
1213911910111186WW domain
121111119Ribosomal RNA adenine dimethylase
221222213Yeast PIR protein repeat
10310197127111103101118861WD domain, G-beta repeat
7764544441Heavy-metal-associated domain
3444444330Adenylate kinase
2332232219Phosphoglucomutase/phosphomannomutase, C-terminal domain
2222211113Ribosomal protein S8
121111119Ribosomal protein S11
4434444431LIM domain
1113Matrixin
1211222213Regulator of chromosome condensation (RCC1) repeat
2232222217Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
11REV protein (anti-repression trans-activator protein)
2322223218chorismate binding enzyme
444433342960s Acidic ribosomal protein
4444444432Prenyltransferase and squalene oxidase repeat
5356556540Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
7867779859Bromodomain
1312141512121214104Acyl-CoA dehydrogenase, C-terminal domain
1516151417171414122Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
2223222217Ribonuclease T2 family
3324333324HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
1111913710101182Serine carboxypeptidase
8878878862Phosphatidylinositol 3- and 4-kinase
3322122217Transketolase, thiamine diphosphate binding domain
5545334534Glycosyl hydrolases family 11
5555545539Inositol monophosphatase family
4414424427Glutaredoxin
5323323324Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
4436444433Iron-containing alcohol dehydrogenase
2212222215Ribosomal protein L10
3453463331KOW motif
11114Ribosomal protein L34
112Negative factor, (F-Protein) or Nef
2312222216RF-1 domain
3413234323Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
7768777756Protein phosphatase 2C
3323333323Nucleotidyl transferase
3312232218Carbonic anhydrase
1221111110Phosphoribulokinase / Uridine kinase family
9967666756Fatty acid desaturase
6666666648MutS domain V
111111118Delta-aminolevulinic acid dehydratase
6645455439Arginase family
6667666649MCM P-loop domain
2322222217Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 3
98788910867FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
49483457345010953434AMP-binding enzyme
4434444431G-protein alpha subunit
67771098761HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
2424162220232321173His Kinase A (phospho-acceptor) domain
3213333321Armadillo/beta-catenin-like repeat
3013233123282728203Tetratricopeptide repeat
2322233219Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
12910111211111187BRCA1 C Terminus (BRCT) domain
7736677649Glycosyl transferases group 1
6245485337Glycosyl transferase family 2
3463452229SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
11211118Ribosomal protein L7/L12 C-terminal domain
101075222442Pectate lyase
1312112112ribonuclease
11111117Urease, gamma subunit
4435444432CoA-ligase
181882914256032204Phosphopantetheine attachment site
3433333325Formyl transferase
8959878963Metallopeptidase family M24
151131815151615108Leucine Rich Repeat
579224235213937262alpha/beta hydrolase fold
3333334325RNA polymerase Rpb2, domain 6
4533434430PB1 domain
2222221215Staphylococcal nuclease homologue
121212121210111293Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
5633433330Zinc finger, ZZ type
3333322322HRDC domain
9888899867CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
4424334327S1 RNA binding domain
1111116HIUase/Transthyretin family
6466677446AhpC/TSA family
4444444432tRNA synthetases class I (W and Y)
1121128UvrD/REP helicase N-terminal domain
41044634439Rhodanese-like domain
2212222215Universal stress protein family
4731214533323635280Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2123222216AIR synthase related protein, N-terminal domain
87899910868tRNA synthetase class II core domain (G, H, P, S and T)
2222222216SpoU rRNA Methylase family
11Phage integrase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
1111122312PDZ domain
7758657752Class II Aldolase and Adducin N-terminal domain
4444444432Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5555555540Fes/CIP4, and EFC/F-BAR homology domain
5266667644IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
5356554538Phospholipase D Active site motif
1411111111Regulator of G protein signaling domain
3323333323GTPase-activator protein for Ras-like GTPase
4434444431RasGEF domain
4424434429RasGEF N-terminal motif
7879888863RhoGAP domain
6766566648RhoGEF domain
3222332219SPRY domain
3333333324RNA polymerase Rpb1, domain 2
111121119Guanylate kinase
4333333426Gelsolin repeat
105889108967UBA/TS-N domain
1915171717161717135PHD-finger
1111116GGL domain
5545555539HECT-domain (ubiquitin-transferase)
122221212Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
94310645647Ribonuclease III domain
2412212216Region in Clathrin and VPS
2222222216RanBP1 domain
2222222216PPIC-type PPIASE domain
3111111110Zn-finger in Ran binding protein and others
199181718202018139Zinc finger C-x8-C-x5-C-x3-H type (and similar)
2312312216Poly(ADP-ribose) polymerase catalytic domain
22211210Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
8918506958725961476F-box domain
111111118Elongation factor 1 gamma, conserved domain
3323333323Calpain family cysteine protease
112122211Copper fist DNA binding domain
5555545539CRAL/TRIO domain
19312191561519126BTB/POZ domain
11114Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
4433344328Voltage gated chloride channel
2413322219Caspase domain
1771191210111087GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1819192016182218150ABC transporter transmembrane region
2121Integrase core domain
7749557852FAD binding domain
775116155712120Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
2222222216ribosomal L5P family C-terminus
5555555540Insulinase (Peptidase family M16)
3333333324Dehydrogenase E1 component
111111118Lumazine binding domain
6646656645Elongation factor G C-terminus
4444445433HMGL-like
4424444430DnaJ central domain
2222322217Starch binding domain
2323222218Ribosomal protein L1p/L10e family
89810778966Cation transporting ATPase, C-terminus
1011911107101179Cation transporter/ATPase, N-terminus
11111117dUTPase
5534445434Aconitase C-terminal domain
3312334322Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
131292613202431148Acyl transferase domain
111111118Urease beta subunit
7757455848Dihydrodipicolinate synthetase family
3920293832323236258haloacid dehalogenase-like hydrolase
7778365649Glycosyl hydrolases family 2
121171614910988Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
111111118Acylphosphatase
111111118Adenylosuccinate synthetase
333113317Asparaginase, N-terminal
111111118Peptidase S24-like
111111118Inorganic pyrophosphatase
1016109998980Glycosyl hydrolases family 16
2222322217Glycosyl hydrolases family 15
8775466649NADH:flavin oxidoreductase / NADH oxidase family
33232223203-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3434233325Glycosyl hydrolase family 20, catalytic domain
4734544435HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
3940192912262326214GMC oxidoreductase
3324223423Asparagine synthase
1315911119101088Fungal cellulose binding domain
6656666647Septin
112111119EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
2521212Flavin-binding monooxygenase-like
3313333322tRNA synthetases class I (E and Q), catalytic domain
2222221215tRNA synthetases class I (R)
4544444534XPG N-terminal domain
161381312591288Metallo-beta-lactamase superfamily
3211123114F5/8 type C domain
2212