PFAM Domains • Dichomitus squalens LYAD-421 SS1 v1.0
Annotations/GenomesCersu1Dicsq1Hetan2Phchr1Pospl1SerlaS7_3_2Serla_S7_9TotalAnnotation Description
PFAMs
7,6368,0727,7115,9273,2607,3986,93646,940
45444238134239263ATPase family associated with various cellular activities (AAA)
48383250173838261ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
11114EGF-like domain
141416156141392Elongation factor Tu GTP binding domain
1010121188867Helix-loop-helix DNA-binding domain
514665440Hsp20/alpha crystallin family
8141078855Hsp70 protein
8147838755KH domain
1111116SH2 domain
25242622142415150SH3 domain
11TNFR/NGFR cysteine-rich region
1110116101058Actin
38175122223729216Ankyrin repeat
677616639ADP-ribosylation factor family
41442853172824235Eukaryotic aspartyl protease
333313319Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
311122212Cytochrome c
1076317741Double-stranded RNA binding motif
1719152491515114EF hand
11122184Fe-4S binding domain
111115Fibronectin type III domain
112Globin
1918111492121113Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
778767951Homeodomain
11Laminin EGF domain
22222212lactate/malate dehydrogenase, NAD binding domain
56556633Myosin head (motor domain)
20717213411365155152998Cytochrome P450
18914713212079143133943Protein kinase domain
131615165171698Pyridine nucleotide-disulphide oxidoreductase
1922222852222140Ras family
10879159967Response regulator receiver domain
38943128RNase H
59606759226049376RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1101223Reverse transcriptase (RNA-dependent DNA polymerase)
111115Copper/zinc superoxide dismutase (SODC)
433312218Iron/manganese superoxide dismutases, alpha-hairpin domain
96541126Subtilase family
3731324793535226Sugar (and other) transporter
781010110955Thioredoxin
456525532Tubulin/FtsZ family, GTPase domain
44342219von Willebrand factor type A domain
535089521763628484Zinc finger, C2H2 type
60595826154140299Zinc finger, C3HC4 type (RING finger)
323115471146186177797Zinc knuckle
222223114Protein-tyrosine phosphatase
83825875557370496short chain dehydrogenase
56643757313939323Zinc-binding dehydrogenase
545634431Thiolase, N-terminal domain
4442211936Beta-ketoacyl synthase, N-terminal domain
224333172Fe-2S iron-sulfur cluster binding domain
2112118Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
77778844Glutamine amidotransferase class-I
10101091101060TCP-1/cpn60 chaperonin family
11ATP synthase A chain
233423320Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
161414117111184E1-E2 ATPase
1419161631618102Core histone H2A/H2B/H3/H4
687836644Alpha amylase, catalytic domain
665534332Phorbol esters/diacylglycerol binding domain (C1 domain)
35443221Bacterial transferase hexapeptide (six repeats)
333613322tRNA synthetases class I (I, L, M and V)
131210145121682Cyclin, N-terminal domain
3324199202728160Carboxylesterase family
44344423DNA polymerase family B
333333321ATP synthase subunit C
1714121711163Peroxidase
352364427Beta-lactamase
344534326C-5 cytosine-specific DNA methylase
26252319142424155Calcineurin-like phosphoesterase
91211812141480Cellulase (glycosyl hydrolase family 5)
675616536tRNA synthetases class II (D, K and N)
3637363483736224Mitochondrial carrier protein
161814135141494Aminotransferase class I and II
66755534Phosphoribosyl transferase domain
151213147111183Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222221112Ribosomal protein S12/S23
111115Chaperonin 10 Kd subunit
1212191610141295C2 domain
1622221841614112PH domain
655857743bZIP transcription factor
2419141931516110Aldehyde dehydrogenase family
70775835284031339Fungal Zn(2)-Cys(6) binuclear cluster domain
25232323112525155Cytochrome b5-like Heme/Steroid binding domain
432414422Oxidoreductase molybdopterin binding domain
1212101328865Oxidoreductase NAD-binding domain
26212112102222134SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
1820212051618118Ubiquitin-conjugating enzyme
5510515536Isocitrate/isopropylmalate dehydrogenase
222212213Ribosomal Proteins L2, RNA binding domain
32232113Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111115Dihydrofolate reductase
221112211Cysteine-rich secretory protein family
122117Ribosomal protein S3, C-terminal domain
973922234Cupin
33Chalcone and stilbene synthases, N-terminal domain
3332133182-oxoacid dehydrogenases acyltransferase (catalytic domain)
333574429Catalase
11114Disintegrin
56112UDP-glucoronosyl and UDP-glucosyl transferase
555525431Aminotransferase class-III
122232214Ribosomal protein S19
1211117DNA gyrase B
34233318Thiamine pyrophosphate enzyme, central domain
333313319Lyase
1112117Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
111115Orotidine 5'-phosphate decarboxylase / HUMPS family
1211117Indole-3-glycerol phosphate synthase
23313315Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
99910991065Kinesin motor domain
22283322132927174DnaJ domain
121414145141487Proteasome subunit
853812330Major intrinsic protein
1111116ATP synthase
342223319Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
212232214Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
151719125151396Ubiquitin family
555425531Cofilin/tropomyosin-type actin-binding protein
2122121014-3-3 protein
32229Alkaline phosphatase
2111117Zinc carboxypeptidase
58614253364444338Aldo/keto reductase family
101312134121175Myb-like DNA-binding domain
555535331Forkhead domain
213Glycosyl hydrolases family 32 N-terminal domain
11112118Ribosomal protein L16p/L10e
1121229Ribosomal protein S14p/S29e
333343221FKBP-type peptidyl-prolyl cis-trans isomerase
111115Glutathione peroxidase
212221111
9661335547Flavodoxin
11Protamine P1
11Tropomyosin
1111116Calreticulin family
4334317Common central domain of tyrosinase
57738737Aminotransferase class-V
22241112Ribonucleotide reductase, small chain
53524344154542294DEAD/DEAH box helicase
88897759319078512Helicase conserved C-terminal domain
1113Fructose-bisphosphate aldolase class-I
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
221232214Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11112118Ribosomal protein L5
44535526Pyridoxal-dependent decarboxylase conserved domain
433323321Citrate synthase, C-terminal domain
555415530GHMP kinases N terminal domain
76666637Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
8981049957Pyridoxal-phosphate dependent enzyme
91517118151590NUDIX domain
43423420pfkB family carbohydrate kinase
678377745Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222232215Ribosomal protein L11, RNA binding domain
878626643Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444414425ATP synthase alpha/beta chain, C terminal domain
444415527Calponin homology (CH) domain
55546631Glutamine amidotransferases class-II
222122213Ribosomal protein S15
34436525Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
332222216Ribosomal protein S2
222222113SRF-type transcription factor (DNA-binding and dimerisation domain)
101097410858GATA zinc finger
2524191692422139Amino acid permease
4452291036Prolyl oligopeptidase family
12112119Ribosomal protein L30p/L7e
9141084111268Histidine phosphatase superfamily (branch 2)
111115Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44344423Aconitase family (aconitate hydratase)
652641125Glycosyl hydrolase family 10
1111116Glycosyl hydrolases family 17
222231113Ribosomal protein S5, N-terminal domain
22221110Nucleoside diphosphate kinase
12212210Tetraspanin family
11Galactoside-binding lectin
221231112Ribosomal protein S10p/S20e
17333219Arrestin (or S-antigen), N-terminal domain
1112111118Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
11111117SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
122222213Ribosomal protein L6
585335534Polyprenyl synthetase
22222212Hexokinase
767519843Dynamin family
2111117Transcription factor TFIID (or TATA-binding protein, TBP)
43434321Rieske [2Fe-2S] domain
11Proton-conducting membrane transporter
888818849Biotin-requiring enzyme
1111116Phosphofructokinase
232222114Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
334323321FGGY family of carbohydrate kinases, N-terminal domain
688838849Enoyl-CoA hydratase/isomerase
222122213Ribosomal protein S9/S16
24322215Transcription factor TFIIB repeat
567546538Cytidine and deoxycytidylate deaminase zinc-binding region
111115Molybdopterin oxidoreductase
71121615115166Chromo (CHRromatin Organisation MOdifier) domain
1121229Phosphatidylinositol-specific phospholipase C, Y domain
1121229Phosphatidylinositol-specific phospholipase C, X domain
676646641D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333323320Malic enzyme, N-terminal domain
22121196-phosphogluconate dehydrogenase, C-terminal domain
91320566665Multicopper oxidase
878648647WW domain
122112211Ribosomal RNA adenine dimethylase
17819212611658128126924WD domain, G-beta repeat
544443327Heavy-metal-associated domain
23633320Adenylate kinase
1112229Phosphoglucomutase/phosphomannomutase, C-terminal domain
212251114Ribosomal protein S8
211122110Ribosomal protein S11
665554435LIM domain
422312216Regulator of chromosome condensation (RCC1) repeat
112221110Ribosomal protein S13/S18
23222213chorismate binding enzyme
33333121860s Acidic ribosomal protein
444414425Prenyltransferase and squalene oxidase repeat
566416735Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
88171069967Bromodomain
8108959958Acyl-CoA dehydrogenase, C-terminal domain
131413148141389Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
22222212Ribonuclease T2 family
254423222HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
12112119Urease alpha-subunit, N-terminal domain
141810212121289Serine carboxypeptidase
22Apoptosis regulator proteins, Bcl-2 family
88877745Phosphatidylinositol 3- and 4-kinase
222212213Transketolase, thiamine diphosphate binding domain
112Glycosyl hydrolases family 11
1113WHEP-TRS domain
232212113Inositol monophosphatase family
34434422Glutaredoxin
44323319Isocitrate lyase family
1111116Serine hydroxymethyltransferase
33232215Iron-containing alcohol dehydrogenase
222322215Ribosomal protein L10
345664230KOW motif
1111116Ribosomal protein L34
433223320RF-1 domain
223313317Sodium:solute symporter family
11114Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1211117IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
471054101050Protein phosphatase 2C
23313214Nucleotidyl transferase
46544427Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
1091165111163Fatty acid desaturase
656696745MutS domain V
11112118Delta-aminolevulinic acid dehydratase
45333321Arginase family
866636641MCM P-loop domain
1111116Squalene/phytoene synthase
111210848760FHA domain
3534323084344226AMP-binding enzyme
131512918141495G-protein alpha subunit
14161915201415113HMG (high mobility group) box
112Haemagglutinin
553695437His Kinase A (phospho-acceptor) domain
33422317Armadillo/beta-catenin-like repeat
31263523173234198Tetratricopeptide repeat
322122214Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
1289669757BRCA1 C Terminus (BRCT) domain
676416636Glycosyl transferases group 1
334624527Glycosyl transferase family 2
11136SAM domain (Sterile alpha motif)
12223212linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
22Pectate lyase
531112316ribonuclease
12112119Urease, gamma subunit
333313319CoA-ligase
8976192271Phosphopantetheine attachment site
222132214Formyl transferase
10101094101063Metallopeptidase family M24
151615145121390Leucine Rich Repeat
35433123103436212alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
355313323PB1 domain
22222212Staphylococcal nuclease homologue
991078952Rab-GTPase-TBC domain
1111116Tudor domain
222222113WH1 domain
44543323Zinc finger, ZZ type
11111117HRDC domain
10109819956CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
434233322S1 RNA binding domain
1113HIUase/Transthyretin family
64464428AhpC/TSA family
34444423tRNA synthetases class I (W and Y)
2121118UvrD/REP helicase N-terminal domain
44465528Rhodanese-like domain
222132214Universal stress protein family
28302624152627176Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
666616637tRNA synthetase class II core domain (G, H, P, S and T)
33Phage integrase family
222212213Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
223119Class II Aldolase and Adducin N-terminal domain
333213318Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
54525425Fes/CIP4, and EFC/F-BAR homology domain
34543221IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
633414425Phospholipase D Active site motif
2111117Regulator of G protein signaling domain
344414424GTPase-activator protein for Ras-like GTPase
777616640RasGEF domain
778117738RasGEF N-terminal motif
121212118111076RhoGAP domain
1213138510970RhoGEF domain
324434424SPRY domain
33433218RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
34445525Gelsolin repeat
777728644UBA/TS-N domain
19171511101915106PHD-finger
11114GGL domain
44545426HECT-domain (ubiquitin-transferase)
121421112Helix-hairpin-helix motif
2111117MSP (Major sperm protein) domain
978237642Ribonuclease III domain
22222111Region in Clathrin and VPS
122312213RanBP1 domain
232222215PPIC-type PPIASE domain
25311113Zn-finger in Ran binding protein and others
2122201891613119Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11114B-box zinc finger
3211181540Poly(ADP-ribose) polymerase catalytic domain
322112112Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
95100631001304443575F-box domain
1111116Elongation factor 1 gamma, conserved domain
2114Calpain family cysteine protease
312352218Copper fist DNA binding domain
666625536CRAL/TRIO domain
2430207211917138BTB/POZ domain
10814132240Ricin-type beta-trefoil lectin domain
11112118Inhibitor of Apoptosis domain
33322215Voltage gated chloride channel
131011275553Caspase domain
5109635543GDSL-like Lipase/Acylhydrolase
111115Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
2918112071717119ABC transporter transmembrane region
124716571Integrase core domain
754823332FAD binding domain
421391029Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11112118HAMP domain
222121212ribosomal L5P family C-terminus
66566635Insulinase (Peptidase family M16)
44443423Dehydrogenase E1 component
11111117Lumazine binding domain
666736640Elongation factor G C-terminus
345424426HMGL-like
34454424DnaJ central domain
423222217Starch binding domain
122231112Ribosomal protein L1p/L10e family
976415537Cation transporting ATPase, C-terminus
977436642Cation transporter/ATPase, N-terminus
1011671181dUTPase
44344423Aconitase C-terminal domain
333313319Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
443148832Acyl transferase domain
12112119Urease beta subunit
32342216Dihydrodipicolinate synthetase family
3034282583030185haloacid dehalogenase-like hydrolase
222132113Glycosyl hydrolases family 2
1114910148874Glycosyl hydrolases family 18
111115Proliferating cell nuclear antigen, N-terminal domain
112Acylphosphatase
1111116Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
123223316Peptidase S24-like
11111117Inorganic pyrophosphatase
665372231Glycosyl hydrolases family 16
325222218Glycosyl hydrolases family 15
13131259111073NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
344342222Glycosyl hydrolase family 20, catalytic domain
656456436HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
22373431171414169GMC oxidoreductase
22213313Asparagine synthase
161717288894Fungal cellulose binding domain
676516637Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
3463319Flavin-binding monooxygenase-like
32323316tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
556625433XPG N-terminal domain
1212975101166Metallo-beta-lactamase superfamily
11114F5/8 type C domain
44654427Choline/Carnitine o-acyltransferase
1111116Putative esterase
11114Glycosyl hydrolase family 9
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333313319RNB domain
424421118Dioxygenase
44425524CNH domain
1221129Diacylglycerol kinase catalytic domain
1411135810768Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
533532122P21-Rho-binding domain
151411142141383PX domain
342213116Ras association (RalGDS/AF-6) domain
444414425UBX domain
555515329VHS domain
1112117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
348414428Carbon-nitrogen hydrolase
224Geminivirus Rep catalytic domain
1111116Prephenate dehydratase
555435532Syntaxin
55555530Pumilio-family RNA binding repeat
757515535Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
11111117ER lumen protein retaining receptor
222122213Glycoprotease family
1111116Histidinol dehydrogenase
333313319impB/mucB/samB family
311121110
11113119Ribosomal L15
11112118Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1113Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
111115Ribosomal S17
11114Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
341715Glycosyl hydrolase family 7
212232214RNA pseudouridylate synthase
787828848Histone deacetylase domain
2211118POT family
221218PWWP domain
18161754151590SET domain
55483328Isochorismatase family
22422214Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
765735437XPG I-region
1111116Acetokinase family
11111117DNA photolyase
111115Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
111141110Cytosol aminopeptidase family, catalytic domain
123Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
223323318Acyl CoA binding protein
55537732Cullin family
111115Elongation factor TS
45826631FAD binding domain
13510876655O-methyltransferase domain
45224522EamA-like transporter family
222312214
778818847ThiF family
11111117Ribosomal family S4e
2111218Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22222212Ammonium Transporter Family
54343322Sulfate permease family
1111116MATH domain
222212213Dehydratase family
22213313Transaldolase/Fructose-6-phosphate aldolase
33321113Mechanosensitive ion channel
1112117GTP cyclohydrolase II
1111153,4-dihydroxy-2-butanone 4-phosphate synthase
444314424Adaptor complexes medium subunit family
109847