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PFAM Domains • Trichoderma atroviride F7 v1.0
Annotations/GenomesTrias1Triasp1Triat2Triatr1Triatro1Triatrov1Trigam1TotalAnnotation Description
PFAMs
9,1179,0729,14011,41611,45811,50811,20572,916
222287 transmembrane receptor (Secretin family)
46485153535351355ATPase family associated with various cellular activities (AAA)
56534747464748344ABC transporter
444444630ATP synthase alpha/beta family, nucleotide-binding domain
14141315151515101Elongation factor Tu GTP binding domain
1211101010101174Helix-loop-helix DNA-binding domain
555555535Hsp20/alpha crystallin family
8881615161485Hsp70 protein
989777855KH domain
1113SH2 domain
22222112121214115SH3 domain
1010101010101070Actin
11711713536383748528Ankyrin repeat
442323220PAN domain
767777647ADP-ribosylation factor family
20202022222223149Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
11111117Cytochrome c
1214Double-stranded RNA binding motif
181918222162EF hand
111144Fe-4S binding domain
433222117Fibronectin type III domain
222222214Globin
18222315161518127Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
131110555453Homeodomain
333333321lactate/malate dehydrogenase, NAD binding domain
112Lipocalin / cytosolic fatty-acid binding protein family
445444530Myosin head (motor domain)
72756670707071494Cytochrome P450
105108112130132133111831Protein kinase domain
22212217171717133Pyridine nucleotide-disulphide oxidoreductase
24252425252524172Ras family
15161515161515107Response regulator receiver domain
213444725RNase H
59616053545453394RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
44Reverse transcriptase (RNA-dependent DNA polymerase)
222333318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
27233655555446296Subtilase family
78797480808089560Sugar (and other) transporter
1212121313131287Thioredoxin
222111110Trypsin
555555535Tubulin/FtsZ family, GTPase domain
4451115von Willebrand factor type A domain
64666216192015262Zinc finger, C2H2 type
3939385555136Zinc finger, C3HC4 type (RING finger)
559232632Zinc knuckle
333333321Protein-tyrosine phosphatase
1601621701591571601671,135short chain dehydrogenase
79778877767779553Zinc-binding dehydrogenase
665777745Thiolase, N-terminal domain
20222223222323155Beta-ketoacyl synthase, N-terminal domain
5553333272Fe-2S iron-sulfur cluster binding domain
11114Papain family cysteine protease
222222113Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
888888856Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
232222215Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
17181620202021132E1-E2 ATPase
877888753Core histone H2A/H2B/H3/H4
554444834Alpha amylase, catalytic domain
112222212Phorbol esters/diacylglycerol binding domain (C1 domain)
10812788962Bacterial transferase hexapeptide (six repeats)
444666636tRNA synthetases class I (I, L, M and V)
888777752Cyclin, N-terminal domain
20201920202021140Carboxylesterase family
444444428DNA polymerase family B
446666638ATP synthase subunit C
666666642Peroxidase
16181919202017129Beta-lactamase
222222214C-5 cytosine-specific DNA methylase
29313027272727198Calcineurin-like phosphoesterase
1111101111111176Cellulase (glycosyl hydrolase family 5)
887888956tRNA synthetases class II (D, K and N)
38383839383937267Mitochondrial carrier protein
21222022222225154Aminotransferase class I and II
8810767854Phosphoribosyl transferase domain
1011101010101071Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
444444327Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
14141210910978C2 domain
191817888886PH domain
12111217181619105bZIP transcription factor
26252525242527177Aldehyde dehydrogenase family
3253182763133143202082,074Fungal Zn(2)-Cys(6) binuclear cluster domain
24232424242424167Cytochrome b5-like Heme/Steroid binding domain
433333322Oxidoreductase molybdopterin binding domain
20201816161616122Oxidoreductase NAD-binding domain
26252730293026193SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
19202020202020139Ubiquitin-conjugating enzyme
777777850Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
655688341Chitin recognition protein
333333321Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
445555533Cupin
333334322Annexin
11111117Eukaryotic-type carbonic anhydrase
3343333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
787777851Catalase
11111117Disintegrin
1555622UDP-glucoronosyl and UDP-glucosyl transferase
1088888959Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
9108888960Thiamine pyrophosphate enzyme, central domain
433444426Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
111115Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
98109891063Kinesin motor domain
25242626252526177DnaJ domain
1414141414141498Proteasome subunit
667777747Major intrinsic protein
11111117ATP synthase
234444324Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
111222211Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
1112129109871Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
22233331814-3-3 protein
222111110Alkaline phosphatase
444444428Zinc carboxypeptidase
36383638383840264Aldo/keto reductase family
141513788772Myb-like DNA-binding domain
444444428Forkhead domain
221111210Glycosyl hydrolases family 32 N-terminal domain
111222211Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
333333321FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
2226
897666648Flavodoxin
11111117Calreticulin family
443333424Common central domain of tyrosinase
998888858Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
38383743424348289DEAD/DEAH box helicase
72747473727373511Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222222214Ribosomal protein L5
978888957Pyridoxal-dependent decarboxylase conserved domain
332333320Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
556666640Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1414131313131393Pyridoxal-phosphate dependent enzyme
18171819191916126NUDIX domain
454555432pfkB family carbohydrate kinase
556666640Glycosyl hydrolases family 28
333312Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1111111011111176Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
11111128Lipoxygenase
444444630ATP synthase alpha/beta chain, C terminal domain
555555535Calponin homology (CH) domain
455222222Glutamine amidotransferases class-II
222222214Ribosomal protein S15
11111117Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
312244319SRF-type transcription factor (DNA-binding and dimerisation domain)
888677751GATA zinc finger
36343518181818177Amino acid permease
333555630Prolyl oligopeptidase family
222222214Ribosomal protein L30p/L7e
888777651Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
666666642Aconitase family (aconitate hydratase)
231212314Glycosyl hydrolase family 10
333111113Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
111222211Ribosomal protein S10p/S20e
322333319Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11122119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
453333324Polyprenyl synthetase
444444428Hexokinase
1010101212121177Dynamin family
21111118Transcription factor TFIID (or TATA-binding protein, TBP)
444333223Rieske [2Fe-2S] domain
111115Phytochrome region
778888854Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333321FGGY family of carbohydrate kinases, N-terminal domain
15151515151517107Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
677777748Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
667666744Chromo (CHRromatin Organisation MOdifier) domain
444444428Phosphatidylinositol-specific phospholipase C, Y domain
555666639Phosphatidylinositol-specific phospholipase C, X domain
1010101313131382D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
112PEP-utilising enzyme, mobile domain
2222222146-phosphogluconate dehydrogenase, C-terminal domain
1010101111111073Multicopper oxidase
111011101091071WW domain
111222211Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
128128138134138139124929WD domain, G-beta repeat
555444431Heavy-metal-associated domain
433433424Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121222212Ribosomal protein S8
111222211Ribosomal protein S11
443444326LIM domain
112222111Matrixin
222222214Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222222214chorismate binding enzyme
33333332160s Acidic ribosomal protein
444444327Prenyltransferase and squalene oxidase repeat
667444334Protein kinase C terminal domain
11111139Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
777888853Bromodomain
109101010101069Acyl-CoA dehydrogenase, C-terminal domain
1414131313131393Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
334444426Ribonuclease T2 family
333333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
677767848Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
222222315Transketolase, thiamine diphosphate binding domain
444444428Glycosyl hydrolases family 11
434444427Inositol monophosphatase family
444444428Glutaredoxin
554222222Isocitrate lyase family
222222315Serine hydroxymethyltransferase
222222214Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
333222217KOW motif
1113Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
1113Ribosomal protein L33
332333219RF-1 domain
554444430Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
666666642Protein phosphatase 2C
333444425Nucleotidyl transferase
76991010556Carbonic anhydrase
111222110Phosphoribulokinase / Uridine kinase family
777888954Fatty acid desaturase
666656641MutS domain V
11111117Delta-aminolevulinic acid dehydratase
543334426Arginase family
666666642MCM P-loop domain
111222211Squalene/phytoene synthase
9910101010866FHA domain
58594949494949362AMP-binding enzyme
333333321G-protein alpha subunit
766987750HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1212121212121284His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
29313515151514154Tetratricopeptide repeat
444333223Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
1112117771065BRCA1 C Terminus (BRCT) domain
666555639Glycosyl transferases group 1
334222218Glycosyl transferase family 2
11111117SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
111115Pectate lyase
332222216ribonuclease
11111117Urease, gamma subunit
555555535CoA-ligase
33312937373637240Phosphopantetheine attachment site
333333321Formyl transferase
98111112121174Metallopeptidase family M24
151514444460Leucine Rich Repeat
57636914141416247alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
344444427PB1 domain
222222214Staphylococcal nuclease homologue
1010101212121278Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
454444328Zinc finger, ZZ type
11111117HRDC domain
999767754CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
555555535S1 RNA binding domain
11111117HIUase/Transthyretin family
534555431AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
111115UvrD/REP helicase N-terminal domain
6641111111059Rhodanese-like domain
222222214Universal stress protein family
55565235353531299Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
9810777755tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
444444529Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
553555533Fes/CIP4, and EFC/F-BAR homology domain
566223327IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
666333330Phospholipase D Active site motif
111777731Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
444444428RasGEF N-terminal motif
878888855RhoGAP domain
566666641RhoGEF domain
335778437SPRY domain
433333322RNA polymerase Rpb1, domain 2
222222214Guanylate kinase
444333324Gelsolin repeat
9810333440UBA/TS-N domain
1917181311139100PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
111115Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
555555434Ribonuclease III domain
333444425Region in Clathrin and VPS
313233318RanBP1 domain
222111110PPIC-type PPIASE domain
312222214Zn-finger in Ran binding protein and others
181816888884Zinc finger C-x8-C-x5-C-x3-H type (and similar)
222222214Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5855631313148224F-box domain
11111117Elongation factor 1 gamma, conserved domain
333333321Calpain family cysteine protease
222333217Copper fist DNA binding domain
655555536CRAL/TRIO domain
6661010101260BTB/POZ domain
56611120Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
223333420Caspase domain
567555538GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
31302425252525185ABC transporter transmembrane region
786666645FAD binding domain
21181414151513110Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555666639Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
666666642Elongation factor G C-terminus
544444429HMGL-like
444344427DnaJ central domain
333332219Starch binding domain
222333318Ribosomal protein L1p/L10e family
998887958Cation transporting ATPase, C-terminus
1111101010101173Cation transporter/ATPase, N-terminus
21122210dUTPase
766666643Aconitase C-terminal domain
434444427Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
20212223222222152Acyl transferase domain
11111117Urease beta subunit
887777751Dihydrodipicolinate synthetase family
37363517171718177haloacid dehalogenase-like hydrolase
779999858Glycosyl hydrolases family 2
26272725262624181Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
112222212Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
222222214Peptidase S24-like
333333220Inorganic pyrophosphatase
1111111616161697Glycosyl hydrolases family 16
333333321Glycosyl hydrolases family 15
18141717171721121NADH:flavin oxidoreductase / NADH oxidase family
5544444303-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333333321Glycosyl hydrolase family 20, catalytic domain
445666637HhH-GPD superfamily base excision DNA repair protein
22111119AIR carboxylase
1314121313131593GMC oxidoreductase
222222214Asparagine synthase
22202121222219147Fungal cellulose binding domain
555666639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
312888838Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
333333321tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
444334426XPG N-terminal domain
1514159992192Metallo-beta-lactamase superfamily
213111110F5/8 type C domain
333333321Choline/Carnitine o-acyltransferase
21111118Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
232222417Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
544333426Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
786888752Dual specificity phosphatase, catalytic domain
232222215P21-Rho-binding domain
1211121313131387PX domain
333222217Ras association (RalGDS/AF-6) domain
555444431UBX domain
444555532VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
13131414151516100Carbon-nitrogen hydrolase
11111117N-acetyltransferase
11111117Prephenate dehydratase
444444428Syntaxin
555444431Pumilio-family RNA binding repeat
666777645Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
111333315Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
222222214Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
433444426POT family
11111117PWWP domain
13151320212119122SET domain
1212131313131591Isochorismatase family
333333321Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
444444428XPG I-region
11111117Acetokinase family
223333319DNA photolyase
11114Cation-independent mannose-6-phosphate receptor repeat
112444319Nitroreductase family
1089999963Sulfatase
121111186,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
222222214Acyl CoA binding protein
444444428Cullin family