PFAM Domains • Naematella encephela UCDFST 68-887.2 v1.0
Annotations/GenomesCryne_H99_1Diocr1Fibin1Treen1Treme1Trich1Triol1TotalAnnotation Description
PFAMs
5,7329,5567,4007,6625,5656,1756,30948,399
11247 transmembrane receptor (rhodopsin family)
31573733363634264ATPase family associated with various cellular activities (AAA)
34833537343537295ABC transporter
454444429ATP synthase alpha/beta family, nucleotide-binding domain
2114EGF-like domain
1319131213131396Elongation factor Tu GTP binding domain
9127988962Helix-loop-helix DNA-binding domain
897778753Hsp70 protein
8116677853KH domain
112SH2 domain
22291411222223143SH3 domain
1019101099976Actin
183336151719111Ankyrin repeat
11213PAN domain
8128888860ADP-ribosylation factor family
81110129141882Eukaryotic aspartyl protease
333333321Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
1111116Cytochrome c
2111117Double-stranded RNA binding motif
16222415161691EF hand
2411194Fe-4S binding domain
1124Fibronectin type III domain
1113Globin
8134528747Glutathione S-transferase, C-terminal domain
232212214Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
687445438Homeodomain
11Laminin EGF domain
262223219lactate/malate dehydrogenase, NAD binding domain
475975643Myosin head (motor domain)
5229108111681Cytochrome P450
891669995969595735Protein kinase domain
1116121311131591Pyridine nucleotide-disulphide oxidoreductase
23312525242423175Ras family
101712129131386Response regulator receiver domain
111321211RNase H
62815554595755423RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1212Reverse transcriptase (RNA-dependent DNA polymerase)
121113413Copper/zinc superoxide dismutase (SODC)
12111219Iron/manganese superoxide dismutases, alpha-hairpin domain
363332222Subtilase family
62746588255239405Sugar (and other) transporter
812998101066Thioredoxin
474444431Tubulin/FtsZ family, GTPase domain
2614417von Willebrand factor type A domain
2439911282928168Zinc finger, C2H2 type
326076373841221Zinc finger, C3HC4 type (RING finger)
11209915077213Zinc knuckle
233222216Protein-tyrosine phosphatase
35855572344449374short chain dehydrogenase
25543027173636225Zinc-binding dehydrogenase
354337833Thiolase, N-terminal domain
12111118Beta-ketoacyl synthase, N-terminal domain
3722434252Fe-2S iron-sulfur cluster binding domain
21111118Enolase, C-terminal TIM barrel domain
33Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
7118987757Glutamine amidotransferase class-I
101310810111072TCP-1/cpn60 chaperonin family
11ATP synthase A chain
222222214Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
101614159101185E1-E2 ATPase
816111011111279Core histone H2A/H2B/H3/H4
920111297775Alpha amylase, catalytic domain
343332422Phorbol esters/diacylglycerol binding domain (C1 domain)
9156686656Bacterial transferase hexapeptide (six repeats)
364433326tRNA synthetases class I (I, L, M and V)
914111099971Cyclin, N-terminal domain
46875101151Carboxylesterase family
464444430DNA polymerase family B
533333323ATP synthase subunit C
1214Legume lectin domain
242222317Peroxidase
1787281153Beta-lactamase
221229C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
112Nitrogenase component 1 type Oxidoreductase
19321518182116139Calcineurin-like phosphoesterase
511151564460Cellulase (glycosyl hydrolase family 5)
695656542tRNA synthetases class II (D, K and N)
34573734333936270Mitochondrial carrier protein
16221721162116129Aminotransferase class I and II
7114367745Phosphoribosyl transferase domain
1318121212121291Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
232222215Ribosomal protein S12/S23
12111118Chaperonin 10 Kd subunit
1217101112111487C2 domain
162198171416101PH domain
79121156656bZIP transcription factor
1415161591819106Aldehyde dehydrogenase family
771018113653100102650Fungal Zn(2)-Cys(6) binuclear cluster domain
19321921172123152Cytochrome b5-like Heme/Steroid binding domain
7105759952Oxidoreductase NAD-binding domain
21352323192120162SNF2 family N-terminal domain
242222216Ribosomal protein S7p/S5e
19282018201919143Ubiquitin-conjugating enzyme
7116657648Isocitrate/isopropylmalate dehydrogenase
232122214Ribosomal Proteins L2, RNA binding domain
242222216Hsp90 protein
232222215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1211117Dihydrofolate reductase
263334526Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
21339Cupin
12111118Annexin
22Eukaryotic-type carbonic anhydrase
3533343242-oxoacid dehydrogenases acyltransferase (catalytic domain)
432212216Catalase
22111119Disintegrin
387826UDP-glucoronosyl and UDP-glucosyl transferase
8101114691068Aminotransferase class-III
242222216Ribosomal protein S19
12111118DNA gyrase B
232223418Thiamine pyrophosphate enzyme, central domain
353534326Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
213Sodium:neurotransmitter symporter family
12111118Adenylate and Guanylate cyclase catalytic domain
12111118ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
12111118Indole-3-glycerol phosphate synthase
11Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1013109129972Kinesin motor domain
23352424252623180DnaJ domain
14191414141414103Proteasome subunit
173314322Major intrinsic protein
12111118ATP synthase
31212211Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
11111117Profilin
112212110Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
12179111091078Ubiquitin family
585555538Cofilin/tropomyosin-type actin-binding protein
1211111814-3-3 protein
31116Alkaline phosphatase
11111117Zinc carboxypeptidase
21483329232020194Aldo/keto reductase family
7124611121163Myb-like DNA-binding domain
675545436Forkhead domain
1211128Glycosyl hydrolases family 32 N-terminal domain
11221119Ribosomal protein L16p/L10e
252222217Ribosomal protein S14p/S29e
373333325FKBP-type peptidyl-prolyl cis-trans isomerase
232222215Glutathione peroxidase
121116
11Dehydrin
543346732Flavodoxin
11Tropomyosin
12111118Calreticulin family
585546437Aminotransferase class-V
232222215Ribonucleotide reductase, small chain
41624449373638307DEAD/DEAH box helicase
711097172656566519Helicase conserved C-terminal domain
12111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
241222215Ribosomal protein L23
121111310Pyridoxal-dependent decarboxylase, C-terminal sheet domain
221122111Ribosomal protein L5
385554434Pyridoxal-dependent decarboxylase conserved domain
11221119Citrate synthase, C-terminal domain
584545435GHMP kinases N terminal domain
665757743Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
811686101160Pyridoxal-phosphate dependent enzyme
922121010131490NUDIX domain
6116647646pfkB family carbohydrate kinase
16431116Glycosyl hydrolases family 28
134Luciferase-like monooxygenase
232122214Ribosomal protein L3
242222216Ribosomal protein L11, RNA binding domain
9241299121085Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
454444429ATP synthase alpha/beta chain, C terminal domain
354344427Calponin homology (CH) domain
492345431Glutamine amidotransferases class-II
232222215Ribosomal protein S15
232310Thaumatin family
12111118Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
232222215Ribosomal protein S2
232222215SRF-type transcription factor (DNA-binding and dimerisation domain)
12161010910976GATA zinc finger
161791153036124Amino acid permease
445422223Prolyl oligopeptidase family
132222113Ribosomal protein L30p/L7e
575654537Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
555444431Aconitase family (aconitate hydratase)
112Glycosyl hydrolase family 10
111115Glycosyl hydrolases family 17
222212213Ribosomal protein S5, N-terminal domain
232212214Nucleoside diphosphate kinase
122117Tetraspanin family
222211111Ribosomal protein S10p/S20e
232321215Arrestin (or S-antigen), N-terminal domain
12111219Phosphoglucose isomerase
12111118Carbohydrate phosphorylase
11111117SecY translocase
12111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
354333324Polyprenyl synthetase
232222215Hexokinase
395533331Dynamin family
12111118Transcription factor TFIID (or TATA-binding protein, TBP)
353243323Rieske [2Fe-2S] domain
1111116Phytochrome region
22Proton-conducting membrane transporter
8107769956Biotin-requiring enzyme
12111219Phosphofructokinase
232222215Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
353324424FGGY family of carbohydrate kinases, N-terminal domain
22Sodium:dicarboxylate symporter family
510654121456Enoyl-CoA hydratase/isomerase
232222215Ribosomal protein S9/S16
232212214Transcription factor TFIIB repeat
1056746846Cytidine and deoxycytidylate deaminase zinc-binding region
12111118Molybdopterin oxidoreductase
88912276575Chromo (CHRromatin Organisation MOdifier) domain
12111129Phosphatidylinositol-specific phospholipase C, Y domain
241112415Phosphatidylinositol-specific phospholipase C, X domain
910111399768D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
343322219Malic enzyme, N-terminal domain
1222211116-phosphogluconate dehydrogenase, C-terminal domain
512444525Multicopper oxidase
71497810863WW domain
122212111Ribosomal RNA adenine dimethylase
1021581009197102102752WD domain, G-beta repeat
164534326Heavy-metal-associated domain
353333323Adenylate kinase
132222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
11221119Ribosomal protein S8
11121118Ribosomal protein S11
485544434LIM domain
112426218Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
242222216chorismate binding enzyme
33333232060s Acidic ribosomal protein
473244428Prenyltransferase and squalene oxidase repeat
493343430Protein kinase C terminal domain
131112211Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
10161099111176Bromodomain
77777111763Acyl-CoA dehydrogenase, C-terminal domain
14241514181414113Ubiquitin carboxyl-terminal hydrolase
12111118Ribosomal protein L36
2114Ribonuclease T2 family
11Gonadotropin-releasing hormone
496756542HSF-type DNA-binding
242222216SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
764732332Serine carboxypeptidase
8128887758Phosphatidylinositol 3- and 4-kinase
553422122Transketolase, thiamine diphosphate binding domain
383324326Inositol monophosphatase family
464444430Glutaredoxin
121213212Isocitrate lyase family
12111118Serine hydroxymethyltransferase
11211129Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
464454532KOW motif
12111118Ribosomal protein L34
1111116Ribosomal protein L33
353333323RF-1 domain
1222119Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
5126555543Protein phosphatase 2C
242222216Nucleotidyl transferase
253424525Carbonic anhydrase
112321111Phosphoribulokinase / Uridine kinase family
465556536Fatty acid desaturase
6116667749MutS domain V
12111118Delta-aminolevulinic acid dehydratase
312513217Arginase family
696666645MCM P-loop domain
133321114Squalene/phytoene synthase
7107878754FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
91610982533110AMP-binding enzyme
353333323G-protein alpha subunit
785666644HMG (high mobility group) box
112Cytochrome c oxidase subunit III
714987101065His Kinase A (phospho-acceptor) domain
242322217Armadillo/beta-catenin-like repeat
22251010162219124Tetratricopeptide repeat
383333427Ion transport protein
12111118DNA gyrase/topoisomerase IV, subunit A
71567108760BRCA1 C Terminus (BRCT) domain
7116677650Glycosyl transferases group 1
241222215Glycosyl transferase family 2
11215SAM domain (Sterile alpha motif)
22111119linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
11ribonuclease
11111117Urease, gamma subunit
373334427CoA-ligase
284323224Phosphopantetheine attachment site
353334324Formyl transferase
10139109111173Metallopeptidase family M24
172712192016102Leucine Rich Repeat
9234312212193alpha/beta hydrolase fold
343333322RNA polymerase Rpb2, domain 6
364433326PB1 domain
232222215Staphylococcal nuclease homologue
91813138101081Rab-GTPase-TBC domain
12111118Tudor domain
11111117WH1 domain
344444326Zinc finger, ZZ type
242222115HRDC domain
7116678853CBS domain
232122214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
374444430S1 RNA binding domain
1111217HIUase/Transthyretin family
354444327AhpC/TSA family
354444428tRNA synthetases class I (W and Y)
12111118UvrD/REP helicase N-terminal domain
486834538Rhodanese-like domain
232222215Universal stress protein family
18581618173839204Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
242222216AIR synthase related protein, N-terminal domain
685566642tRNA synthetase class II core domain (G, H, P, S and T)
123Phage integrase family
242222216Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
245813629Class II Aldolase and Adducin N-terminal domain
134323218Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
565343329Fes/CIP4, and EFC/F-BAR homology domain
732233626IQ calmodulin-binding motif
232122214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
461145425Phospholipase D Active site motif
114411113Regulator of G protein signaling domain
334444426GTPase-activator protein for Ras-like GTPase
353333323RasGEF domain
333333321RasGEF N-terminal motif
918111111101080RhoGAP domain
1417121212111189RhoGEF domain
353323322SPRY domain
343333322RNA polymerase Rpb1, domain 2
12111219Guanylate kinase
342232218Gelsolin repeat
81475717765UBA/TS-N domain
15211313131617108PHD-finger
212218GGL domain
464444430HECT-domain (ubiquitin-transferase)
2211118Helix-hairpin-helix motif
12111118MSP (Major sperm protein) domain
5114183436Ribonuclease III domain
225422219Region in Clathrin and VPS
343323321RanBP1 domain
11111117PPIC-type PPIASE domain
142231417Zn-finger in Ran binding protein and others
192589141719111Zinc finger C-x8-C-x5-C-x3-H type (and similar)
211127Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2030043192631403F-box domain
11111117Elongation factor 1 gamma, conserved domain
1113Calpain family cysteine protease
12111118Copper fist DNA binding domain
595656642CRAL/TRIO domain
5166382444BTB/POZ domain
51713411112990Ricin-type beta-trefoil lectin domain
12111118Inhibitor of Apoptosis domain
232222215Voltage gated chloride channel
243222217Caspase domain
384223426GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
12111118POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
15411718191416140ABC transporter transmembrane region
41317Integrase core domain
353334526FAD binding domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
242222216ribosomal L5P family C-terminus
575556538Insulinase (Peptidase family M16)
334344425Dehydrogenase E1 component
11111117Lumazine binding domain
585555538Elongation factor G C-terminus
464444430HMGL-like
484444432DnaJ central domain
223322216Ribosomal protein L1p/L10e family
484635636Cation transporting ATPase, C-terminus
6106756747Cation transporter/ATPase, N-terminus
222222214dUTPase
555444431Aconitase C-terminal domain
343333322Amino acid kinase family
12111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
12111118Acyl transferase domain
11111117Urease beta subunit
424412219Dihydrodipicolinate synthetase family
26351013192226151haloacid dehalogenase-like hydrolase
63312318Glycosyl hydrolases family 2
345433224Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
12111118Adenylosuccinate synthetase
141111110Asparaginase, N-terminal
243333321Peptidase S24-like
141111110Inorganic pyrophosphatase
165221219Glycosyl hydrolases family 16
232222215Glycosyl hydrolases family 15
574435331NADH:flavin oxidoreductase / NADH oxidase family
2322246213-hydroxyacyl-CoA dehydrogenase, C-terminal domain
131113212Glycosyl hydrolase family 20, catalytic domain
354233323HhH-GPD superfamily base excision DNA repair protein
12111118AIR carboxylase
264325628GMC oxidoreductase
253222218Asparagine synthase
585544435Septin
11111117EF-1 guanine nucleotide exchange domain
12111118Homoserine dehydrogenase
253735227Flavin-binding monooxygenase-like
333333422tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
695564641XPG N-terminal domain
71255711956Metallo-beta-lactamase superfamily
333334322Choline/Carnitine o-acyltransferase
12121119Putative esterase
12111118Glycosyl hydrolase family 9
12111118Ferrochelatase
232232317Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
12111118Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
343333322RNB domain
1348Dioxygenase
344532324CNH domain
242222216Diacylglycerol kinase catalytic domain
6126566647Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
453344326P21-Rho-binding domain
1217131311131291PX domain
222311112Ras association (RalGDS/AF-6) domain
253335425UBX domain
465444431VHS domain
1211117Phosphoinositide 3-kinase C2
252222217DAHP synthetase I family
6135668852Carbon-nitrogen hydrolase
213N-acetyltransferase
12111118Prephenate dehydratase
342233320Syntaxin
453234425Pumilio-family RNA binding repeat
586636640Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
1111116ER lumen protein retaining receptor
232222215Glycoprotease family
11211118Histidinol dehydrogenase
383533328impB/mucB/samB family
11Ice nucleation protein repeat
11Ribonuclease P
111115
12111118Ribosomal L15
13311110Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112Ribosomal L28 family
1111116Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
11111117RNA pseudouridylate synthase
786556643Histone deacetylase domain
161322217POT family
132222214PWWP domain
12291514118897SET domain
310235326Isochorismatase family
12112310Permease family
12111118Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
396644537XPG I-region
11111117Acetokinase family
533213DNA photolyase
12111118Cation-independent mannose-6-phosphate receptor repeat
1232210Nitroreductase family
123Cytosol aminopeptidase family, catalytic domain
2281417Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
343333322Acyl CoA binding protein
474444431Cullin family
1111116Elongation factor TS
252124622FAD binding domain
5106354437EamA-like transporter family
121116