PFAM Domains • Coccodinium bartschii CBS 121709 v1.0
Annotations/GenomesAspfo1Cocba1Colsu1Gymci1_1Monpu1Pseel1Xanpa2TotalAnnotation Description
PFAMs
10,1596,9359,7227,1557,2858,9307,13657,322
1127 transmembrane receptor (rhodopsin family)
50435538436250341ATPase family associated with various cellular activities (AAA)
65356241425637338ABC transporter
544444429ATP synthase alpha/beta family, nucleotide-binding domain
1414141414141498Elongation factor Tu GTP binding domain
9101181010563Helix-loop-helix DNA-binding domain
412832222Hsp20/alpha crystallin family
879778753Hsp70 protein
8888810959KH domain
11111117SH2 domain
23222223222720159SH3 domain
101091010101069Actin
72401091173115677602Ankyrin repeat
111115PAN domain
777778750ADP-ribosylation factor family
11101569221487Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
221121110Double-stranded RNA binding motif
19172017171917126EF hand
111112184Fe-4S binding domain
323222216Fibronectin type III domain
2121118Globin
2016910919992Glutathione S-transferase, C-terminal domain
21111118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
748889549Homeodomain
322252218lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
454445531Myosin head (motor domain)
14960163603614298708Cytochrome P450
144101114132114135114854Protein kinase domain
1710171013141394Pyridine nucleotide-disulphide oxidoreductase
23232324232422162Ras family
1418151010161295Response regulator receiver domain
725514428RNase H
65616261626967447RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
134Reverse transcriptase (RNA-dependent DNA polymerase)
11Serpin (serine protease inhibitor)
322112112Copper/zinc superoxide dismutase (SODC)
213221112Iron/manganese superoxide dismutases, alpha-hairpin domain
6331457359Subtilase family
100518437435832405Sugar (and other) transporter
128129911768Thioredoxin
314111112Trypsin
446544330Tubulin/FtsZ family, GTPase domain
145312319von Willebrand factor type A domain
77487149526949415Zinc finger, C2H2 type
45474144415443315Zinc finger, C3HC4 type (RING finger)
86612213754Zinc knuckle
222222214Protein-tyrosine phosphatase
14489130616914986728short chain dehydrogenase
119437438397643432Zinc-binding dehydrogenase
655765438Thiolase, N-terminal domain
4911419135029202Beta-ketoacyl synthase, N-terminal domain
6555653352Fe-2S iron-sulfur cluster binding domain
11122119Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
1088989860Glutamine amidotransferase class-I
101010109101069TCP-1/cpn60 chaperonin family
112ATP synthase A chain
443334223Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
20132214151112107E1-E2 ATPase
788978754Core histone H2A/H2B/H3/H4
1613145137775Alpha amylase, catalytic domain
224232217Phorbol esters/diacylglycerol binding domain (C1 domain)
11867910657Bacterial transferase hexapeptide (six repeats)
333334423tRNA synthetases class I (I, L, M and V)
779787449Cyclin, N-terminal domain
466301212218135Carboxylesterase family
444444428DNA polymerase family B
645346432ATP synthase subunit C
3211328231Peroxidase
66106811855Beta-lactamase
233324421C-5 cytosine-specific DNA methylase
30192826262625180Calcineurin-like phosphoesterase
93115414854Cellulase (glycosyl hydrolase family 5)
887777650tRNA synthetases class II (D, K and N)
41384336363636266Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
33152217181813136Aminotransferase class I and II
1081010109663Phosphoribosyl transferase domain
109101010101170Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
221112211Ribosomal protein S4/S9 N-terminal domain
222221213Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1012131210111280C2 domain
17191815181715119PH domain
12814899868bZIP transcription factor
31172315261512139Aldehyde dehydrogenase family
339139242119187122741,222Fungal Zn(2)-Cys(6) binuclear cluster domain
29213123212019164Cytochrome b5-like Heme/Steroid binding domain
336221219Oxidoreductase molybdopterin binding domain
19152212151411108Oxidoreductase NAD-binding domain
27232825243524186SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
22212221211922148Ubiquitin-conjugating enzyme
8710667650Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
4114616638Chitin recognition protein
234226625Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
446110328Cupin
332322217Annexin
14117Eukaryotic-type carbonic anhydrase
111115Chalcone and stilbene synthases, N-terminal domain
3344333232-oxoacid dehydrogenases acyltransferase (catalytic domain)
1026353231Catalase
21111118Disintegrin
13116UDP-glucoronosyl and UDP-glucosyl transferase
9119878456Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
946697445Thiamine pyrophosphate enzyme, central domain
445335327Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
2215Sodium:neurotransmitter symporter family
12111118Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
21111219Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
3123312Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
111011101010971Kinesin motor domain
28252828273428198DnaJ domain
1414141414141498Proteasome subunit
756248436Major intrinsic protein
11111117ATP synthase
211239Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
11111117Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
910101110151277Ubiquitin family
545444430Cofilin/tropomyosin-type actin-binding protein
22222231514-3-3 protein
247632529Alkaline phosphatase
1211311221Zinc carboxypeptidase
39273217273518195Aldo/keto reductase family
14121516131815103Myb-like DNA-binding domain
546444532Forkhead domain
3531113Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
22212211Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
121221211
889667751Flavodoxin
11111117Calreticulin family
6718317345Common central domain of tyrosinase
969756749Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
45403938384441285DEAD/DEAH box helicase
77697773748874532Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
111222211Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111228Ribosomal protein L5
976667748Pyridoxal-dependent decarboxylase conserved domain
524233423Citrate synthase, C-terminal domain
556656538GHMP kinases N terminal domain
777687648Biotin carboxylase, N-terminal domain
31111119Tryptophan synthase alpha chain
14101512129981Pyridoxal-phosphate dependent enzyme
16152016131212104NUDIX domain
547556739pfkB family carbohydrate kinase
1991938Glycosyl hydrolases family 28
12238Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
10111298151378Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
22Lipoxygenase
544444429ATP synthase alpha/beta chain, C terminal domain
555555535Calponin homology (CH) domain
547545636Glutamine amidotransferases class-II
222222214Ribosomal protein S15
11'Cold-shock' DNA-binding domain
12115Thaumatin family
11211118Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
622222218SRF-type transcription factor (DNA-binding and dimerisation domain)
10810549854GATA zinc finger
65384239394337303Amino acid permease
545436330Prolyl oligopeptidase family
222122213Ribosomal protein L30p/L7e
141013798667Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
745455434Aconitase family (aconitate hydratase)
2921216Glycosyl hydrolase family 10
544325629Glycosyl hydrolases family 17
212122212Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
112Tetraspanin family
221221212Ribosomal protein S10p/S20e
1022446230Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
936633737Polyprenyl synthetase
645463432Hexokinase
75111079857Dynamin family
11311119Transcription factor TFIID (or TATA-binding protein, TBP)
937264435Rieske [2Fe-2S] domain
11Phytochrome region
33Proton-conducting membrane transporter
8910889860Biotin-requiring enzyme
11111117Phosphofructokinase
112212211Ribosomal protein S17
413111112Hydroxymethylglutaryl-coenzyme A reductase
334453325FGGY family of carbohydrate kinases, N-terminal domain
112Sodium:dicarboxylate symporter family
10111214811874Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
7910788756Cytidine and deoxycytidylate deaminase zinc-binding region
11112118Molybdopterin oxidoreductase
4194510437Chromo (CHRromatin Organisation MOdifier) domain
224212215Phosphatidylinositol-specific phospholipase C, Y domain
325312319Phosphatidylinositol-specific phospholipase C, X domain
11611798557D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222132113Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
2212222136-phosphogluconate dehydrogenase, C-terminal domain
137191811261Multicopper oxidase
9911101011969WW domain
11112219Ribosomal RNA adenine dimethylase
111811Yeast PIR protein repeat
118102103114108113108766WD domain, G-beta repeat
446575536Heavy-metal-associated domain
344334425Adenylate kinase
321322316Phosphoglucomutase/phosphomannomutase, C-terminal domain
222221112Ribosomal protein S8
11111128Ribosomal protein S11
444444428LIM domain
112Matrixin
312423217Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
422322217chorismate binding enzyme
33333332160s Acidic ribosomal protein
644445532Prenyltransferase and squalene oxidase repeat
655777744Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
767776646Bromodomain
91111131313979Acyl-CoA dehydrogenase, C-terminal domain
15151416151614105Ubiquitin carboxyl-terminal hydrolase
1113Ribosomal protein L36
222123113Ribonuclease T2 family
333333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
127103611857Serine carboxypeptidase
778778751Phosphatidylinositol 3- and 4-kinase
412122113Transketolase, thiamine diphosphate binding domain
462315Glycosyl hydrolases family 11
534333223Inositol monophosphatase family
444444428Glutaredoxin
722553327Isocitrate lyase family
222222214Serine hydroxymethyltransferase
522436224Iron-containing alcohol dehydrogenase
222122213Ribosomal protein L10
423432220KOW motif
11114Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
323223318RF-1 domain
422156222Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11121118DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111128Glucose-6-phosphate dehydrogenase, NAD binding domain
766668746Protein phosphatase 2C
223323318Nucleotidyl transferase
323134319Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
857555641Fatty acid desaturase
566646639MutS domain V
11112118Delta-aminolevulinic acid dehydratase
655454433Arginase family
666666642MCM P-loop domain
422112214Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
89971011963FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
84414944395646359AMP-binding enzyme
333337527G-protein alpha subunit
1589668961HMG (high mobility group) box
1014116511865His Kinase A (phospho-acceptor) domain
333233320Armadillo/beta-catenin-like repeat
27232924233423183Tetratricopeptide repeat
343224321Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
12118101112973BRCA1 C Terminus (BRCT) domain
1489575553Glycosyl transferases group 1
567455941Glycosyl transferase family 2
121212413SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
773118Pectate lyase
5141112ribonuclease
11111117Urease, gamma subunit
445454430CoA-ligase
60163414184527214Phosphopantetheine attachment site
324233219Formyl transferase
127109910865Metallopeptidase family M24
1512141416131296Leucine Rich Repeat
44374824274634260alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
424444224PB1 domain
222222214Staphylococcal nuclease homologue
111091011111274Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443444326Zinc finger, ZZ type
211221211HRDC domain
9911897861CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
323434322S1 RNA binding domain
11111117HIUase/Transthyretin family
444233323AhpC/TSA family
444445429tRNA synthetases class I (W and Y)
11125UvrD/REP helicase N-terminal domain
546635433Rhodanese-like domain
222222214Universal stress protein family
33314230345732259Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
978889857tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
411111110PDZ domain
556356232Class II Aldolase and Adducin N-terminal domain
112Influenza non-structural protein (NS1)
334444426Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
535555533Fes/CIP4, and EFC/F-BAR homology domain
655465536IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
554555433Phospholipase D Active site motif
11212119Regulator of G protein signaling domain
334334323GTPase-activator protein for Ras-like GTPase
544444429RasGEF domain
544444429RasGEF N-terminal motif
788778853RhoGAP domain
656666641RhoGEF domain
224225522SPRY domain
333333321RNA polymerase Rpb1, domain 2
21211119Guanylate kinase
534445328Gelsolin repeat
788779955UBA/TS-N domain
15171716181718118PHD-finger
111115GGL domain
666666642HECT-domain (ubiquitin-transferase)
222121212Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
853555839Ribonuclease III domain
413332319Region in Clathrin and VPS
323233319RanBP1 domain
222222214PPIC-type PPIASE domain
323233319Zn-finger in Ran binding protein and others
15131620151517111Zinc finger C-x8-C-x5-C-x3-H type (and similar)
232211213Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
66424181384956373F-box domain
11111117Elongation factor 1 gamma, conserved domain
235122318Calpain family cysteine protease
222232215Copper fist DNA binding domain
755755539CRAL/TRIO domain
1058155211781BTB/POZ domain
11226Ricin-type beta-trefoil lectin domain
11211129Inhibitor of Apoptosis domain
344333424Voltage gated chloride channel
224122316Caspase domain
6115634742GDSL-like Lipase/Acylhydrolase
11111218Poly-adenylate binding protein, unique domain
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
33163215233016165ABC transporter transmembrane region
22Integrase core domain
7711456545FAD binding domain
30620111091298Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
654665537Insulinase (Peptidase family M16)
433333322Dehydrogenase E1 component
1111116Lumazine binding domain
666666642Elongation factor G C-terminus
545457434HMGL-like
444444428DnaJ central domain
1113Sulfotransferase domain
21413112Starch binding domain
223222215Ribosomal protein L1p/L10e family
11713864655Cation transporting ATPase, C-terminus
14915996769Cation transporter/ATPase, N-terminus
21121119dUTPase
744454432Aconitase C-terminal domain
434333424Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
519378104927191Acyl transferase domain
11111117Urease beta subunit
759453336Dihydrodipicolinate synthetase family
44304030323128235haloacid dehalogenase-like hydrolase
53622321Glycosyl hydrolases family 2
1622119615685Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
11111117Adenylosuccinate synthetase
213121111Asparaginase, N-terminal
33Beta defensin
322222215Peptidase S24-like
11211118Inorganic pyrophosphatase
89186491165Glycosyl hydrolases family 16
213233115Glycosyl hydrolases family 15
164124711256NADH:flavin oxidoreductase / NADH oxidase family
6143411203-hydroxyacyl-CoA dehydrogenase, C-terminal domain
313312215Glycosyl hydrolase family 20, catalytic domain
546544331HhH-GPD superfamily base excision DNA repair protein
11111128AIR carboxylase
3382812133425153GMC oxidoreductase
327222422Asparagine synthase
819210140Fungal cellulose binding domain
555655637Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
32232517Flavin-binding monooxygenase-like
333434424tRNA synthetases class I (E and Q), catalytic domain
11211219tRNA synthetases class I (R)
544454430XPG N-terminal domain
16711131112979Metallo-beta-lactamase superfamily
1135F5/8 type C domain
223324218Choline/Carnitine o-acyltransferase
21111118Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
311112110Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
1246437137Dioxygenase
11BTK motif
222233216CNH domain
211222212Diacylglycerol kinase catalytic domain
777687850Dual specificity phosphatase, catalytic domain
223223216P21-Rho-binding domain
1413121514111392PX domain
333323320Ras association (RalGDS/AF-6) domain
545556535UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
158141098670Carbon-nitrogen hydrolase
51111110N-acetyltransferase
11Geminivirus Rep catalytic domain
11111117Prephenate dehydratase
335532324Syntaxin
555555535Pumilio-family RNA binding repeat
666666642Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222111211ER lumen protein retaining receptor
222222214Glycoprotease family
212112110Histidinol dehydrogenase
444444428impB/mucB/samB family
11111218
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111218Translationally controlled tumour protein
283316Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
454445430Histone deacetylase domain
536471228POT family
11111117PWWP domain
1614191592111105SET domain
11596610754Isochorismatase family
324142117Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
545444430XPG I-region
11111117Acetokinase family
2423415DNA photolyase
1113NlpC/P60 family
11Cation-independent mannose-6-phosphate receptor repeat
1113Nitroreductase family
1017583135Sulfatase
11