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PFAM Domains • Schizosaccharomyces pombe
Annotations/GenomesAscru1Canca1Cybja1Lipst1_1Nadfu1Picme2Saico1Schpo1Wican1TotalAnnotation Description
PFAMs
5,3294,4745,4876,3675,3244,8886,1175,2835,80749,076
313033353732363333300ATPase family associated with various cellular activities (AAA)
302528562630321936282ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
171214141414141614129Elongation factor Tu GTP binding domain
13799810841078Helix-loop-helix DNA-binding domain
424432221Hsp20/alpha crystallin family
10797109781077Hsp70 protein
85899898872KH domain
1111111119SH2 domain
221621212118202121181SH3 domain
108111011910101190Actin
121012161513211416129Ankyrin repeat
11PAN domain
77677554654ADP-ribosylation factor family
114138681321277Eukaryotic aspartyl protease
24344443331Cyclic nucleotide-binding domain
21112111111Cytochrome c
51232222524Double-stranded RNA binding motif
201414151510221411135EF hand
1111111184Fe-4S binding domain
112121210Fibronectin type III domain
7222221220Globin
921074866860Glutathione S-transferase, C-terminal domain
21212112214Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
52466463440Homeodomain
42322322323lactate/malate dehydrogenase, NAD binding domain
33255235129Myosin head (motor domain)
4552145142565Cytochrome P450
10279968698969610697856Protein kinase domain
75121097116976Pyridine nucleotide-disulphide oxidoreductase
351923232419211721202Ras family
447795235973Response regulator receiver domain
11111117RNase H
514057625846586759498RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
14216Reverse transcriptase (RNA-dependent DNA polymerase)
21211211213Copper/zinc superoxide dismutase (SODC)
11311112213Iron/manganese superoxide dismutases, alpha-hairpin domain
106655434548Subtilase family
810291031414371139265Sugar (and other) transporter
9710897891077Thioredoxin
3122111213Trypsin
45354334334Tubulin/FtsZ family, GTPase domain
1124von Willebrand factor type A domain
373032414133291839300Zinc finger, C2H2 type
303032343130383837300Zinc finger, C3HC4 type (RING finger)
43493357442Zinc knuckle
62322223325Protein-tyrosine phosphatase
162025802017492140288short chain dehydrogenase
212323401516321229211Zinc-binding dehydrogenase
33253261530Thiolase, N-terminal domain
22252222221Beta-ketoacyl synthase, N-terminal domain
333333523282Fe-2S iron-sulfur cluster binding domain
21211112213Enolase, C-terminal TIM barrel domain
87988888771Glutamine amidotransferase class-I
11911910109101190TCP-1/cpn60 chaperonin family
12112121112Glutamine synthetase, catalytic domain
11131111111Triosephosphate isomerase
12812171199913100E1-E2 ATPase
145107131011121092Core histone H2A/H2B/H3/H4
1121941512449Alpha amylase, catalytic domain
22121354121Phorbol esters/diacylglycerol binding domain (C1 domain)
54566556749Bacterial transferase hexapeptide (six repeats)
44334334331tRNA synthetases class I (I, L, M and V)
1161171078111182Cyclin, N-terminal domain
1732101428Carboxylesterase family
44444454437DNA polymerase family B
33343333328ATP synthase subunit C
2112222113Peroxidase
1311219Beta-lactamase
314C-5 cytosine-specific DNA methylase
191521291820172221182Calcineurin-like phosphoesterase
31233172325Cellulase (glycosyl hydrolase family 5)
66666576654tRNA synthetases class II (D, K and N)
343339353830382335305Mitochondrial carrier protein
151115111110131114111Aminotransferase class I and II
1068810888874Phosphoribosyl transferase domain
64991261191177Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
21223223219Ribosomal protein S4/S9 N-terminal domain
22223223220Ribosomal protein S12/S23
224Bacterial regulatory helix-turn-helix proteins, AraC family
11112111110Chaperonin 10 Kd subunit
106889610121180C2 domain
121415141512111718128PH domain
63578554447bZIP transcription factor
1010141191014715100Aldehyde dehydrogenase family
6143821253980463193600Fungal Zn(2)-Cys(6) binuclear cluster domain
17121419131218613124Cytochrome b5-like Heme/Steroid binding domain
1315Oxidoreductase molybdopterin binding domain
5712878108974Oxidoreductase NAD-binding domain
191719191819222019172SNF2 family N-terminal domain
22223223220Ribosomal protein S7p/S5e
131516211514181416142Ubiquitin-conjugating enzyme
95666665655Isocitrate/isopropylmalate dehydrogenase
22223324222Ribosomal Proteins L2, RNA binding domain
11112111110Hsp90 protein
22222222218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
224Chitin recognition protein
443323322Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
112Cupin
1113Annexin
11Eukaryotic-type carbonic anhydrase
112Trypsin and protease inhibitor
232232322212-oxoacid dehydrogenases acyltransferase (catalytic domain)
12262131220Catalase
11114Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
63848957858Aminotransferase class-III
22223223220Ribosomal protein S19
1111111119DNA gyrase B
25554436438Thiamine pyrophosphate enzyme, central domain
43333335330Lyase
22222222218Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22112111112Adenylate and Guanylate cyclase catalytic domain
11112111110ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111119Indole-3-glycerol phosphate synthase
33Aromatic amino acid lyase
21112111111Pyruvate kinase, barrel domain
787610489867Kinesin motor domain
242124242523262425216DnaJ domain
141414141414141414126Proteasome subunit
21221181220Major intrinsic protein
1111111119ATP synthase
11Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
21212113114Ribosomal protein L22p/L17e
21222233219Ribosomal protein L14p/L23e
988111171113886Ubiquitin family
42442454534Cofilin/tropomyosin-type actin-binding protein
1212212211414-3-3 protein
12331141319Alkaline phosphatase
111111118Zinc carboxypeptidase
1061541817181524154Aldo/keto reductase family
151113131413171314123Myb-like DNA-binding domain
23333334428Forkhead domain
1842217Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
22223222219Ribosomal protein S14p/S29e
53333333329FKBP-type peptidyl-prolyl cis-trans isomerase
41112111214Glutathione peroxidase
12121122214
868107855764Flavodoxin
11212112112Calreticulin family
46464565646Aminotransferase class-V
1111111119Ribonucleotide reductase, small chain
353033363633403634313DEAD/DEAH box helicase
585360705958706959556Helicase conserved C-terminal domain
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222223219Ribosomal protein L23
1111111119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11112222214Ribosomal protein L5
4336334329Pyridoxal-dependent decarboxylase conserved domain
22233121218Citrate synthase, C-terminal domain
55475455545GHMP kinases N terminal domain
57565664650Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
8710887971175Pyridoxal-phosphate dependent enzyme
7999107118777NUDIX domain
34434354333pfkB family carbohydrate kinase
11Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
22222223219Ribosomal protein L3
22223223220Ribosomal protein L11, RNA binding domain
13101211131210912102Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
44444444436ATP synthase alpha/beta chain, C terminal domain
64445476343Calponin homology (CH) domain
55466444442Glutamine amidotransferases class-II
22222222218Ribosomal protein S15
11Thaumatin family
21111111110Fructose-1-6-bisphosphatase, N-terminal domain
11211211212Ribonucleotide reductase, all-alpha domain
22222123218Ribosomal protein S2
12322233220SRF-type transcription factor (DNA-binding and dimerisation domain)
951171071051074GATA zinc finger
46144092330162243243Amino acid permease
22322223321Prolyl oligopeptidase family
22214313220Ribosomal protein L30p/L7e
13698355646Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
54444444437Aconitase family (aconitate hydratase)
12433541326Glycosyl hydrolases family 17
21222222217Ribosomal protein S5, N-terminal domain
1111111119Nucleoside diphosphate kinase
21212222216Ribosomal protein S10p/S20e
4546354435Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11212211213SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
32323223323Ribosomal protein L6
33333333327Polyprenyl synthetase
33224332325Hexokinase
33334333328Dynamin family
1111111119Transcription factor TFIID (or TATA-binding protein, TBP)
31321252322Rieske [2Fe-2S] domain
11Phytochrome region
69677765760Biotin-requiring enzyme
21213211215Phosphofructokinase
22223223220Ribosomal protein S17
1111111119Hydroxymethylglutaryl-coenzyme A reductase
33333241426FGGY family of carbohydrate kinases, N-terminal domain
37444271436Enoyl-CoA hydratase/isomerase
22223223220Ribosomal protein S9/S16
22232222219Transcription factor TFIIB repeat
66646756551Cytidine and deoxycytidylate deaminase zinc-binding region
11111218Molybdopterin oxidoreductase
21242257227Chromo (CHRromatin Organisation MOdifier) domain
1111111119Phosphatidylinositol-specific phospholipase C, Y domain
11211111110Phosphatidylinositol-specific phospholipase C, X domain
85684445650D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11111121110Malic enzyme, N-terminal domain
211111211116-phosphogluconate dehydrogenase, C-terminal domain
21592351533Multicopper oxidase
637810567658WW domain
22222122217Ribosomal RNA adenine dimethylase
3133515Yeast PIR protein repeat
8884871001048611510893865WD domain, G-beta repeat
33353332429Heavy-metal-associated domain
43333332327Adenylate kinase
22222233321Phosphoglucomutase/phosphomannomutase, C-terminal domain
12312323219Ribosomal protein S8
11112122112Ribosomal protein S11
43333344229LIM domain
22212121114Regulator of chromosome condensation (RCC1) repeat
22214223220Ribosomal protein S13/S18
22222222218chorismate binding enzyme
5353552754060s Acidic ribosomal protein
44444444335Prenyltransferase and squalene oxidase repeat
95568669559Protein kinase C terminal domain
111111118Single-strand binding protein family
11112111110S-adenosylmethionine synthetase, N-terminal domain
9897111099981Bromodomain
72658230Acyl-CoA dehydrogenase, C-terminal domain
151214171314171515132Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
11211118Ribonuclease T2 family
43434442533HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
112Urease alpha-subunit, N-terminal domain
72323343330Serine carboxypeptidase
888877810872Phosphatidylinositol 3- and 4-kinase
11132111213Transketolase, thiamine diphosphate binding domain
11WHEP-TRS domain
12221141317Inositol monophosphatase family
52547555442Glutaredoxin
22222131217Isocitrate lyase family
22212222217Serine hydroxymethyltransferase
1113219Iron-containing alcohol dehydrogenase
22323212219Ribosomal protein L10
34647279446KOW motif
1111111119Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
2222222418RF-1 domain
12921433732Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
11212113113Glucose-6-phosphate dehydrogenase, NAD binding domain
86758666658Protein phosphatase 2C
33233244125Nucleotidyl transferase
21121111212Carbonic anhydrase
11212121213Phosphoribulokinase / Uridine kinase family
74665752648Fatty acid desaturase
74464564646MutS domain V
11111121110Delta-aminolevulinic acid dehydratase
35411425328Arginase family
66666666755MCM P-loop domain
11121121111Squalene/phytoene synthase
899987107875FHA domain
1616101211618912110AMP-binding enzyme
23222232220G-protein alpha subunit
55566568450HMG (high mobility group) box
224573183549His Kinase A (phospho-acceptor) domain
22233245225Armadillo/beta-catenin-like repeat
211318202215192016164Tetratricopeptide repeat
23112231217Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
71189991210984BRCA1 C Terminus (BRCT) domain
44564468445Glycosyl transferases group 1
22232222219Glycosyl transferase family 2
111111118SAM domain (Sterile alpha motif)
11111218linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
11ribonuclease
112Urease, gamma subunit
33233263227CoA-ligase
33332363329Phosphopantetheine attachment site
22222232219Formyl transferase
89988798874Metallopeptidase family M24
125111212169121011218Leucine Rich Repeat
121318201114271123149alpha/beta hydrolase fold
33334333328RNA polymerase Rpb2, domain 6
13322143322PB1 domain
22222222218Staphylococcal nuclease homologue
87810107912980Rab-GTPase-TBC domain
11111117Tudor domain
1111111119WH1 domain
32141223220Zinc finger, ZZ type
21111122112HRDC domain
7989117106976CBS domain
21222224219Ribosomal protein L13
22223123219Ribosomal protein L4/L1 family
111115Clp protease
24344355333S1 RNA binding domain
1111111119HIUase/Transthyretin family
44455443437AhpC/TSA family
44444444436tRNA synthetases class I (W and Y)
1212212314UvrD/REP helicase N-terminal domain
45645367545Rhodanese-like domain
122212212Universal stress protein family
121113251811181711136Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
11111211110C-terminal regulatory domain of Threonine dehydratase
24322222221AIR synthase related protein, N-terminal domain
118888898977tRNA synthetase class II core domain (G, H, P, S and T)
21212221215SpoU rRNA Methylase family
22222222319Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111119Glycosyl transferase family, a/b domain
31111119PDZ domain
21213724224Class II Aldolase and Adducin N-terminal domain
42434245432Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
43435357438Fes/CIP4, and EFC/F-BAR homology domain
22233245225IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
22222232118Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
53335242330GTPase-activator protein for Ras-like GTPase
52444452434RasGEF domain
42444432431RasGEF N-terminal motif
1359811789979RhoGAP domain
34252277436RhoGEF domain
44435333433SPRY domain
33333333327RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
41533344532Gelsolin repeat
557667712863UBA/TS-N domain
121113141411181715125PHD-finger
1111116GGL domain
45565567548HECT-domain (ubiquitin-transferase)
11237Helix-hairpin-helix motif
11111112110MSP (Major sperm protein) domain
41431553733Ribonuclease III domain
22222322219Region in Clathrin and VPS
32323333325RanBP1 domain
11121121111PPIC-type PPIASE domain
11121131112Zn-finger in Ran binding protein and others
1112111414101699106Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11B-box zinc finger
11125Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
221316391511281224180F-box domain
21222111113Elongation factor 1 gamma, conserved domain
111216Calpain family cysteine protease
1231322418Copper fist DNA binding domain
53554455541CRAL/TRIO domain
32352133426BTB/POZ domain
22Ricin-type beta-trefoil lectin domain
1111111119Inhibitor of Apoptosis domain
23233222322Voltage gated chloride channel
8112111217Caspase domain
31151111115GDSL-like Lipase/Acylhydrolase
11112111110Poly-adenylate binding protein, unique domain
1111111119POLO box duplicated region
121610Seripauperin and TIP1 family
11131233121012917129ABC transporter transmembrane region
13114Integrase core domain
34453455336FAD binding domain
1111318Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1121311313HAMP domain
22223223220ribosomal L5P family C-terminus
96657856759Insulinase (Peptidase family M16)
23223222220Dehydrogenase E1 component
1111111119Lumazine binding domain
66667677657Elongation factor G C-terminus
34345543334HMGL-like
44544544539DnaJ central domain
22212223218Ribosomal protein L1p/L10e family
33684443641Cation transporting ATPase, C-terminus
847106656658Cation transporter/ATPase, N-terminus
111111118dUTPase
54444444437Aconitase C-terminal domain
43334333329Amino acid kinase family
1111111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
11141222115Acyl transferase domain
112Urease beta subunit
11417Dihydrodipicolinate synthetase family
201925321919211623194haloacid dehalogenase-like hydrolase
1225Glycosyl hydrolases family 2
42353351430Glycosyl hydrolases family 18
1111111119Proliferating cell nuclear antigen, N-terminal domain
112Acylphosphatase
1111111119Adenylosuccinate synthetase
1114512Asparaginase, N-terminal
11Interferon gamma
32233243224Peptidase S24-like
21212212215Inorganic pyrophosphatase
55342291334Glycosyl hydrolases family 16
21111122314Glycosyl hydrolases family 15
72532463840NADH:flavin oxidoreductase / NADH oxidase family
122273-hydroxyacyl-CoA dehydrogenase, C-terminal domain
11Glycosyl hydrolase family 20, catalytic domain
22321264224HhH-GPD superfamily base excision DNA repair protein
1111111119AIR carboxylase
325GMC oxidoreductase