PFAM Domains • Setomelanomma holmii CBS 110217 v1.0
Annotations/GenomesCocca1Coclu2Cocmi1Cocsa1Cucbe1Pyrtr1Setho1Stano2TotalAnnotation Description
PFAMs
8,9078,8208,7108,8298,8066,7139,5618,29168,637
111147 transmembrane receptor (rhodopsin family)
4040394048394848342ATPase family associated with various cellular activities (AAA)
4342384142404343332ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
1414141414121415111Elongation factor Tu GTP binding domain
1314151612111212105Helix-loop-helix DNA-binding domain
3333413323Hsp20/alpha crystallin family
7777877757Hsp70 protein
8888899967KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
111111118SH2 domain
2323232324242221183SH3 domain
10101010107101077Actin
7286707554588668569Ankyrin repeat
7785326442PAN domain
7777877757ADP-ribosylation factor family
1713141511121212106Eukaryotic aspartyl protease
4444444432Cyclic nucleotide-binding domain
1113Cytochrome b(C-terminal)/b6/petD
112Cytochrome b/b6/petB
111111118Cytochrome c
1111122110Double-stranded RNA binding motif
1817201817191717143EF hand
12111112104Fe-4S binding domain
3233333323Fibronectin type III domain
111111118Globin
88810136191183Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
998899121074Homeodomain
4444534432lactate/malate dehydrogenase, NAD binding domain
5444454535Myosin head (motor domain)
1431061241279487118117916Cytochrome P450
108103104110175104140115959Protein kinase domain
1616141319121915124Pyridine nucleotide-disulphide oxidoreductase
2525232425222423191Ras family
2524252523242522193Response regulator receiver domain
945624RNase H
5860585764585855468RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
2222323319Copper/zinc superoxide dismutase (SODC)
2222222115Iron/manganese superoxide dismutases, alpha-hairpin domain
131112128991084Subtilase family
6971666875889881616Sugar (and other) transporter
11111111119121389Thioredoxin
3433223424Trypsin
4445444433Tubulin/FtsZ family, GTPase domain
3444334328von Willebrand factor type A domain
6158605973706547493Zinc finger, C2H2 type
5451565169436447435Zinc finger, C3HC4 type (RING finger)
421166235562Zinc knuckle
2222222216Protein-tyrosine phosphatase
1321401251271351131631211,056short chain dehydrogenase
7159666263607561517Zinc-binding dehydrogenase
6666675648Thiolase, N-terminal domain
2918222115231322163Beta-ketoacyl synthase, N-terminal domain
66766656482Fe-2S iron-sulfur cluster binding domain
111111118Enolase, C-terminal TIM barrel domain
1214Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
8888968863Glutamine amidotransferase class-I
10101010101010979TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
3333333324Glutamine synthetase, catalytic domain
2222222216Triosephosphate isomerase
1617171814161716131E1-E2 ATPase
88867318682Core histone H2A/H2B/H3/H4
1113Copper binding proteins, plastocyanin/azurin family
6776668652Alpha amylase, catalytic domain
1212221213Phorbol esters/diacylglycerol binding domain (C1 domain)
9778786860Bacterial transferase hexapeptide (six repeats)
3433383532tRNA synthetases class I (I, L, M and V)
7778788658Cyclin, N-terminal domain
2525252823223331212Carboxylesterase family
4444420DNA polymerase family B
4444444432ATP synthase subunit C
7877577654Peroxidase
8678117141172Beta-lactamase
2322332219C-5 cytosine-specific DNA methylase
213NADH dehydrogenase
2525262630262624208Calcineurin-like phosphoesterase
98810116111376Cellulase (glycosyl hydrolase family 5)
7877777858tRNA synthetases class II (D, K and N)
4540424138404041327Mitochondrial carrier protein
112recA bacterial DNA recombination protein
162115171791714126Aminotransferase class I and II
9889999970Phosphoribosyl transferase domain
121212111212111092Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
11114Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
121312121411111095C2 domain
1921191920181920155PH domain
99991188669bZIP transcription factor
2525262423212319186Aldehyde dehydrogenase family
17217917918219892163811,246Fungal Zn(2)-Cys(6) binuclear cluster domain
2424262421222723191Cytochrome b5-like Heme/Steroid binding domain
4344436533Oxidoreductase molybdopterin binding domain
1715181812101414118Oxidoreductase NAD-binding domain
2525272425262626204SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2125222226212523185Ubiquitin-conjugating enzyme
7677679756Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
1212111111610679Chitin recognition protein
1231325421Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
4464566540Cupin
2222222216Annexin
1111212211Eukaryotic-type carbonic anhydrase
11111117Chalcone and stilbene synthases, N-terminal domain
43333333252-oxoacid dehydrogenases acyltransferase (catalytic domain)
4444356434Catalase
111111118Disintegrin
112UDP-glucoronosyl and UDP-glucosyl transferase
12911127810978Aminotransferase class-III
2222222115Ribosomal protein S19
111111118DNA gyrase B
7656639547Thiamine pyrophosphate enzyme, central domain
4444443431Lyase
2222222216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111131211Sodium:neurotransmitter symporter family
111111118Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
1124Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
1010109101091381Kinesin motor domain
2930293035323628249DnaJ domain
1414141414141414112Proteasome subunit
6865779755Major intrinsic protein
111111118ATP synthase
3333333223Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
111111118Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
91211111211151091Ubiquitin family
5555525436Cofilin/tropomyosin-type actin-binding protein
222222221614-3-3 protein
6666645645Alkaline phosphatase
8888978864Zinc carboxypeptidase
2627252930213524217Aldo/keto reductase family
1513141313141512109Myb-like DNA-binding domain
4444445433Forkhead domain
3435233528Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
3333212320Ribosomal protein S14p/S29e
5555555540FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
111121119
8889678660Flavodoxin
22Protamine P1
111111118Calreticulin family
1212119106161086Common central domain of tyrosinase
81188737658Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
4139394040524438333DEAD/DEAH box helicase
7575747676777776606Helicase conserved C-terminal domain
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
1111212110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2222222216Ribosomal protein L5
6767666751Pyridoxal-dependent decarboxylase conserved domain
3332222219Citrate synthase, C-terminal domain
5555556440GHMP kinases N terminal domain
7777668654Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
10101010910111282Pyridoxal-phosphate dependent enzyme
1616151515141813122NUDIX domain
6565657646pfkB family carbohydrate kinase
4344768440Glycosyl hydrolases family 28
1111116Luciferase-like monooxygenase
2222222216Ribosomal protein L3
2222212215Ribosomal protein L11, RNA binding domain
1313131413101414104Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
4444444331ATP synthase alpha/beta chain, C terminal domain
5555545337Calponin homology (CH) domain
6565656342Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
111111118Thaumatin family
2122221113Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
2222222216SRF-type transcription factor (DNA-binding and dimerisation domain)
6667657548GATA zinc finger
4045413738324233308Amino acid permease
5665525741Prolyl oligopeptidase family
3333323222Ribosomal protein L30p/L7e
121212121210121294Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4444445433Aconitase family (aconitate hydratase)
6655544843Glycosyl hydrolase family 10
2232424322Glycosyl hydrolases family 17
2222212215Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
1111116Tetraspanin family
1211122212Ribosomal protein S10p/S20e
5444445535Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
8487454343Polyprenyl synthetase
4444557538Hexokinase
7544899551Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
5565857647Rieske [2Fe-2S] domain
11Phytochrome region
434112Proton-conducting membrane transporter
10810108910671Biotin-requiring enzyme
111111118Phosphofructokinase
2222222115Ribosomal protein S17
1111113110Hydroxymethylglutaryl-coenzyme A reductase
3333333324FGGY family of carbohydrate kinases, N-terminal domain
11111117Sodium:dicarboxylate symporter family
11121111129161193Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
6766769552Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
5757727646Chromo (CHRromatin Organisation MOdifier) domain
3333333324Phosphatidylinositol-specific phospholipase C, Y domain
3433443327Phosphatidylinositol-specific phospholipase C, X domain
98779791066D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2222222216Malic enzyme, N-terminal domain
22222122156-phosphogluconate dehydrogenase, C-terminal domain
1011111089121081Multicopper oxidase
111111101110111186WW domain
111111118Ribosomal RNA adenine dimethylase
222222113Yeast PIR protein repeat
116117114132102103133100917WD domain, G-beta repeat
5656446440Heavy-metal-associated domain
4333545330Adenylate kinase
2223232218Phosphoglucomutase/phosphomannomutase, C-terminal domain
2222212215Ribosomal protein S8
111121119Ribosomal protein S11
4444444432LIM domain
231111110Matrixin
2221222215Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222222216chorismate binding enzyme
444443443160s Acidic ribosomal protein
5455444435Prenyltransferase and squalene oxidase repeat
5655655744Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
77771079862Bromodomain
1614151514121714117Acyl-CoA dehydrogenase, C-terminal domain
1514151515171417122Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
2222222216Ribonuclease T2 family
3333333223HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
11111111810131186Serine carboxypeptidase
8888878863Phosphatidylinositol 3- and 4-kinase
2222222216Transketolase, thiamine diphosphate binding domain
5555335738Glycosyl hydrolases family 11
5555545539Inositol monophosphatase family
4444424430Glutaredoxin
3333425326Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
5444443432Iron-containing alcohol dehydrogenase
2222222216Ribosomal protein L10
4333364430KOW motif
11111117Ribosomal protein L34
11111117Negative factor, (F-Protein) or Nef
2222222216RF-1 domain
2432335224Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
7777777756Protein phosphatase 2C
3333333223Nucleotidyl transferase
2322234321Carbonic anhydrase
111111118Phosphoribulokinase / Uridine kinase family
7877868758Fatty acid desaturase
6666666648MutS domain V
111111118Delta-aminolevulinic acid dehydratase
5456455539Arginase family
6666666648MCM P-loop domain
2222222216Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
8977898864FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
5750416042505448402AMP-binding enzyme
4444444432G-protein alpha subunit
7889997663HMG (high mobility group) box
1113NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
2020202220232317165His Kinase A (phospho-acceptor) domain
3333333324Armadillo/beta-catenin-like repeat
2837273127282823229Tetratricopeptide repeat
2322331218Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
10119111111121287BRCA1 C Terminus (BRCT) domain
6776778654Glycosyl transferases group 1
6467385342Glycosyl transferase family 2
3233354427SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
5655626338Pectate lyase
112111119ribonuclease
111111118Urease, gamma subunit
4444444432CoA-ligase
2726213116251823187Phosphopantetheine attachment site
3333333324Formyl transferase
99999710971Metallopeptidase family M24
1615161714151313119Leucine Rich Repeat
3953424146215342337alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
3433334427PB1 domain
2222222216Staphylococcal nuclease homologue
12101212121012989Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
3434435632Zinc finger, ZZ type
1112323215HRDC domain
88878910967CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
3334333325S1 RNA binding domain
11111117HIUase/Transthyretin family
4555675643AhpC/TSA family
4444544433tRNA synthetases class I (W and Y)
111111118UvrD/REP helicase N-terminal domain
4544436434Rhodanese-like domain
2122222114Universal stress protein family
4245413746324936328Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
9999999871tRNA synthetase class II core domain (G, H, P, S and T)
2222222216SpoU rRNA Methylase family
11114Phage integrase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
2122121112PDZ domain
7987757656Class II Aldolase and Adducin N-terminal domain
4444444432Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5555555439Fes/CIP4, and EFC/F-BAR homology domain
6655666545IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
5554555741Phospholipase D Active site motif
111111118Regulator of G protein signaling domain
3333333324GTPase-activator protein for Ras-like GTPase
4444444432RasGEF domain
4444434431RasGEF N-terminal motif
8788788862RhoGAP domain
6666666648RhoGEF domain
2222333421SPRY domain
3333333324RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
3433434226Gelsolin repeat
710888108766UBA/TS-N domain
1817181818161715137PHD-finger
11111117GGL domain
5555555540HECT-domain (ubiquitin-transferase)
1211122212Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
8598548855Ribonuclease III domain
2222212215Region in Clathrin and VPS
2222222216RanBP1 domain
2222222216PPIC-type PPIASE domain
111115Zn-finger in Ran binding protein and others
1818171721202213146Zinc finger C-x8-C-x5-C-x3-H type (and similar)
2222312216Poly(ADP-ribose) polymerase catalytic domain
222222113Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
6667645984728651549F-box domain
111111118Elongation factor 1 gamma, conserved domain
3333333122Calpain family cysteine protease
222221112Copper fist DNA binding domain
5555545539CRAL/TRIO domain
161118201962112123BTB/POZ domain
1225Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3333444428Voltage gated chloride channel
2233222218Caspase domain
10999151011881GDSL-like Lipase/Acylhydrolase
111121119Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
2019172018182019151ABC transporter transmembrane region
8889557555FAD binding domain
141162161591092Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2222222216ribosomal L5P family C-terminus
5555555439Insulinase (Peptidase family M16)
3333333324Dehydrogenase E1 component
111111118Lumazine binding domain
6666656647Elongation factor G C-terminus
6444445435HMGL-like
4444444432DnaJ central domain
2222423320Starch binding domain
2222322217Ribosomal protein L1p/L10e family
8999879968Cation transporting ATPase, C-terminus
111111101079877Cation transporter/ATPase, N-terminus
111121119dUTPase
4444445332Aconitase C-terminal domain
3333334325Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2818221915201322157Acyl transferase domain
111111118Urease beta subunit
5766755647Dihydrodipicolinate synthetase family
3434373532323334271haloacid dehalogenase-like hydrolase
77667661055Glycosyl hydrolases family 2
141314181291413107Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
111111118Acylphosphatase
111111118Adenylosuccinate synthetase
3333313322Asparaginase, N-terminal
111111129Peptidase S24-like
111111118Inorganic pyrophosphatase
1091095911871Glycosyl hydrolases family 16
2222323319Glycosyl hydrolases family 15
6654668647NADH:flavin oxidoreductase / NADH oxidase family
44342243263-hydroxyacyl-CoA dehydrogenase, C-terminal domain
3333333324Glycosyl hydrolase family 20, catalytic domain
4444444432HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
2524252523263133212GMC oxidoreductase
3333424224Asparagine synthase
1212111189131086Fungal cellulose binding domain
6666666547Septin
111111219EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
1125413Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
3333333324tRNA synthetases class I (E and Q), catalytic domain
2122222215tRNA synthetases class I (R)
4444444331XPG N-terminal domain
1312