Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
PFAM Domains • Colletotrichum salicis CBS607.94
<
Annotations/GenomesColca1Coler1Colfa1Colgr1Colhi1Colsa1Colso1Colsu1Colzo1Gloac1Gloci1TotalAnnotation Description
PFAMs
9,3809,8389,2689,26810,28912,6829,7859,7229,68411,08712,746113,749
1121211112137 transmembrane receptor (rhodopsin family)
337 transmembrane receptor (Secretin family)
5163534755574855535162595ATPase family associated with various cellular activities (AAA)
6266625675626862606073706ABC transporter
4444444444444ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
1414141416151414141414157Elongation factor Tu GTP binding domain
1111111111111111111112122Helix-loop-helix DNA-binding domain
2222322222223Hsp20/alpha crystallin family
910981212999108105Hsp70 protein
9899989899996KH domain
111111111110SH2 domain
2222212223112222222324234SH3 domain
999910119991010104Actin
759382696628861098391170952Ankyrin repeat
2313222144933PAN domain
7777777777777ADP-ribosylation factor family
1616151519221615161918187Eukaryotic aspartyl protease
4444344444443Cyclic nucleotide-binding domain
1111111111111Cytochrome c
111111118Double-stranded RNA binding motif
202020191621920191818191EF hand
11122111111134Fe-4S binding domain
3333312334331Fibronectin type III domain
2222322222223Globin
10118108779121616114Glutathione S-transferase, C-terminal domain
1111111111111Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
87679478791183Homeodomain
2222332223326lactate/malate dehydrogenase, NAD binding domain
1111116Low-density lipoprotein receptor repeat class B
4445754445551Myosin head (motor domain)
1551651511352111941851631772182722,026Cytochrome P450
1101161031011311201101141131111271,256Protein kinase domain
1818202021151917202627221Pyridine nucleotide-disulphide oxidoreductase
2323232322242323232423254Ras family
1614141417141615161515166Response regulator receiver domain
34241043535548RNase H
6063626061556162606264670RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
3418Reverse transcriptase (RNA-dependent DNA polymerase)
1112131211115Copper/zinc superoxide dismutase (SODC)
3333323333332Iron/manganese superoxide dismutases, alpha-hairpin domain
2232272047382531254144352Subtilase family
818579851341408384841381791,172Sugar (and other) transporter
1311121313131412131313140Thioredoxin
3323233432432Trypsin
6666656675564Tubulin/FtsZ family, GTPase domain
443454554644von Willebrand factor type A domain
6669666256217171747888722Zinc finger, C2H2 type
454244414054341424540428Zinc finger, C3HC4 type (RING finger)
99789546651078Zinc knuckle
2222322222223Protein-tyrosine phosphatase
1201421161231501561341301271872351,620short chain dehydrogenase
69746069848081747898129896Zinc-binding dehydrogenase
5555555555555Thiolase, N-terminal domain
3644334448253941423047429Beta-ketoacyl synthase, N-terminal domain
55555255558552Fe-2S iron-sulfur cluster binding domain
1111111111111Enolase, C-terminal TIM barrel domain
981089118889896Glutamine amidotransferase class-I
1010101011101010101010111TCP-1/cpn60 chaperonin family
3333343333435Glutamine synthetase, catalytic domain
2222222222222Triosephosphate isomerase
2222212228282222222327259E1-E2 ATPase
9109989138998101Core histone H2A/H2B/H3/H4
11114Copper binding proteins, plastocyanin/azurin family
1212121214141414131312142Alpha amylase, catalytic domain
2423323422229Phorbol esters/diacylglycerol binding domain (C1 domain)
8791012686781394Bacterial transferase hexapeptide (six repeats)
3333653333338tRNA synthetases class I (I, L, M and V)
7666698967676Cyclin, N-terminal domain
2930272642423230294462393Carboxylesterase family
4444544444445DNA polymerase family B
5555555555555ATP synthase subunit C
911910101191191213114Peroxidase
9121099121010111720129Beta-lactamase
3333333333434C-5 cytosine-specific DNA methylase
2528272823262728302929300Calcineurin-like phosphoesterase
12119101320111191817141Cellulase (glycosyl hydrolase family 5)
7777988788884tRNA synthetases class II (D, K and N)
4444414254434443444544488Mitochondrial carrier protein
1626171822281622202634245Aminotransferase class I and II
1010910851010109899Phosphoribosyl transferase domain
1010101011101010101010111Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111111111Phosphoglycerate kinase
2222222122221Ribosomal protein S4/S9 N-terminal domain
2222322222223Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
1111111111111Chaperonin 10 Kd subunit
1313131413101313141214142C2 domain
181818191681818181918188PH domain
1514141511161414141413154bZIP transcription factor
2121212429302223232844286Aldehyde dehydrogenase family
2422432332001952102612422554054502,936Fungal Zn(2)-Cys(6) binuclear cluster domain
2729312732303031332934333Cytochrome b5-like Heme/Steroid binding domain
5555536664555Oxidoreductase molybdopterin binding domain
2223211818202322202228237Oxidoreductase NAD-binding domain
2628272527272828302828302SNF2 family N-terminal domain
2222222222222Ribosomal protein S7p/S5e
2022212020221922202121228Ubiquitin-conjugating enzyme
78778971079887Isocitrate/isopropylmalate dehydrogenase
2222222222222Ribosomal Proteins L2, RNA binding domain
1111111111111Hsp90 protein
2222222222222Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111111111Dihydrofolate reductase
1014101210131414131212134Chitin recognition protein
4545545455551Cysteine-rich secretory protein family
1111111111111Ribosomal protein S3, C-terminal domain
6624785669867Cupin
2222222222222Annexin
3433444434440Eukaryotic-type carbonic anhydrase
1111111111212Chalcone and stilbene synthases, N-terminal domain
44445444444452-oxoacid dehydrogenases acyltransferase (catalytic domain)
6645456664557Catalase
1111111111111Disintegrin
4334284332642UDP-glucoronosyl and UDP-glucosyl transferase
99101010129991416117Aminotransferase class-III
2222222222222Ribosomal protein S19
1111111111111DNA gyrase B
6755665657967Thiamine pyrophosphate enzyme, central domain
4645554545653Lyase
1222332222223Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1212321212219Sodium:neurotransmitter symporter family
1111111111111Adenylate and Guanylate cyclase catalytic domain
1111111111111ATP synthase delta (OSCP) subunit
1111111111212Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111111111Indole-3-glycerol phosphate synthase
2221231212119Aromatic amino acid lyase
1111111111111Pyruvate kinase, barrel domain
1111111113111111111011122Kinesin motor domain
2829262723262728272829298DnaJ domain
1414141413141414141414153Proteasome subunit
5655686676666Major intrinsic protein
1111211111112ATP synthase
1111161124625Glycosyl hydrolase family 1
11111111111113'5'-cyclic nucleotide phosphodiesterase
1111111111111Profilin
1111121111112Ribosomal protein L22p/L17e
2222222222222Ribosomal protein L14p/L23e
10910111181010111015115Ubiquitin family
5555555555555Cofilin/tropomyosin-type actin-binding protein
222223222222314-3-3 protein
7747746778872Alkaline phosphatase
1111101111101111111113121Zinc carboxypeptidase
3033293141393132304253391Aldo/keto reductase family
151613141461515151615154Myb-like DNA-binding domain
5444466644552Forkhead domain
232323323326Glycosyl hydrolases family 32 N-terminal domain
1111121111112Ribosomal protein L16p/L10e
2222222222222Ribosomal protein S14p/S29e
3333433333334FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
112111111212
10109111011119101213116Flavodoxin
1111212111113Calreticulin family
1319131220281218142733209Common central domain of tyrosinase
108987139981012103Aminotransferase class-V
111111111110Ribonucleotide reductase, small chain
3839383841453839393940434DEAD/DEAH box helicase
7577737778737477767677833Helicase conserved C-terminal domain
1111111111111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222222222Ribosomal protein L23
1111111111111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111211112113Ribosomal protein L5
6666776668771Pyridoxal-dependent decarboxylase conserved domain
4444354444444Citrate synthase, C-terminal domain
6555455655556GHMP kinases N terminal domain
6777886768878Biotin carboxylase, N-terminal domain
1111111111111Tryptophan synthase alpha chain
1213121113161315121719153Pyridoxal-phosphate dependent enzyme
2020202021152120202019216NUDIX domain
6777976777777pfkB family carbohydrate kinase
798712177981520119Glycosyl hydrolases family 28
2222172222327Luciferase-like monooxygenase
2222322222223Ribosomal protein L3
2222222222222Ribosomal protein L11, RNA binding domain
1112111212121312131215135Histidine phosphatase superfamily (branch 1)
1111111111111Thymidylate synthase
1135Lipoxygenase
4444444444444ATP synthase alpha/beta chain, C terminal domain
5545555555554Calponin homology (CH) domain
77761037778877Glutamine amidotransferases class-II
2222222222222Ribosomal protein S15
1111113211114Thaumatin family
2222322222223Fructose-1-6-bisphosphatase, N-terminal domain
1111111111111Ribonucleotide reductase, all-alpha domain
2222212222221Ribosomal protein S2
2222221222221SRF-type transcription factor (DNA-binding and dimerisation domain)
12109107411101198101GATA zinc finger
3840383942294142395674478Amino acid permease
5556475556659Prolyl oligopeptidase family
2222223222223Ribosomal protein L30p/L7e
1210141313101013121010127Histidine phosphatase superfamily (branch 2)
1111111111111Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4455766556760Aconitase family (aconitate hydratase)
109101076109126796Glycosyl hydrolase family 10
4454434436546Glycosyl hydrolases family 17
2222222222222Ribosomal protein S5, N-terminal domain
1111111111111Nucleoside diphosphate kinase
1111116Tetraspanin family
1111121111112Ribosomal protein S10p/S20e
3232343234231Arrestin (or S-antigen), N-terminal domain
1111211111112Phosphoglucose isomerase
1111111111111Carbohydrate phosphorylase
1111111111111SecY translocase
1111111111111Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222222222Ribosomal protein L6
69859311684776Polyprenyl synthetase
5545555555554Hexokinase
9111081015111110910114Dynamin family
1211212311116Transcription factor TFIID (or TATA-binding protein, TBP)
7777568788979Rieske [2Fe-2S] domain
11Phytochrome region
910910111191091111110Biotin-requiring enzyme
1111211111112Phosphofructokinase
2222222222222Ribosomal protein S17
1211312321118Hydroxymethylglutaryl-coenzyme A reductase
4444444444444FGGY family of carbohydrate kinases, N-terminal domain
1111211111112Sodium:dicarboxylate symporter family
1112141318171212111818156Enoyl-CoA hydratase/isomerase
2223322222224Ribosomal protein S9/S16
2222222222222Transcription factor TFIIB repeat
10101010981010101010107Cytidine and deoxycytidylate deaminase zinc-binding region
1111112111112Molybdopterin oxidoreductase
9111110899910713106Chromo (CHRromatin Organisation MOdifier) domain
4455554455551Phosphatidylinositol-specific phospholipase C, Y domain
5576685567767Phosphatidylinositol-specific phospholipase C, X domain
101210911131111111418130D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2222222222222Malic enzyme, N-terminal domain
11111111112126-phosphogluconate dehydrogenase, C-terminal domain
2021191820231919192324225Multicopper oxidase
101111119101111121111118WW domain
1111121111112Ribosomal RNA adenine dimethylase
111111111110Yeast PIR protein repeat
1081071071021051001121031051021171,168WD domain, G-beta repeat
6656666666867Heavy-metal-associated domain
4433633434441Adenylate kinase
1111221112215Phosphoglucomutase/phosphomannomutase, C-terminal domain
1212222212118Ribosomal protein S8
1111121111112Ribosomal protein S11
4444444444444LIM domain
111115Matrixin
3243233232431Regulator of chromosome condensation (RCC1) repeat
2222222222222Ribosomal protein S13/S18
2222222222222chorismate binding enzyme
333333333343460s Acidic ribosomal protein
5444534444647Prenyltransferase and squalene oxidase repeat
6556615555655Protein kinase C terminal domain
1111111111111Single-strand binding protein family
1111111111111S-adenosylmethionine synthetase, N-terminal domain
7777886777778Bromodomain
111111118121211101413124Acyl-CoA dehydrogenase, C-terminal domain
1414141416131414141414155Ubiquitin carboxyl-terminal hydrolase
111111111110Ribosomal protein L36
2222232223224Ribonuclease T2 family
3333333333333HSF-type DNA-binding
2222232222223SRP54-type protein, GTPase domain
1111111111111Urease alpha-subunit, N-terminal domain
1010111018131010101420136Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
8888888888888Phosphatidylinositol 3- and 4-kinase
2222322222425Transketolase, thiamine diphosphate binding domain
6666546664560Glycosyl hydrolases family 11
4444544444445Inositol monophosphatase family
4444544444546Glutaredoxin
3333433225637Isocitrate lyase family
2222222222222Serine hydroxymethyltransferase
2222312222222Iron-containing alcohol dehydrogenase
2122121222219Ribosomal protein L10
3333333333333KOW motif
1111111111111Ribosomal protein L34
111115Negative factor, (F-Protein) or Nef
3333233333332RF-1 domain
2222432213528Sodium:solute symporter family
1111111111111Imidazoleglycerol-phosphate dehydratase
1111111111111DNA polymerase family A
1111211111112IMP dehydrogenase / GMP reductase domain
1111111111111Glucose-6-phosphate dehydrogenase, NAD binding domain
6666666666666Protein phosphatase 2C
2332223332227Nucleotidyl transferase
3333323333332Carbonic anhydrase
1111111111111Phosphoribulokinase / Uridine kinase family
67661167777777Fatty acid desaturase
6666566666665MutS domain V
1211111111112Delta-aminolevulinic acid dehydratase
5654664547860Arginase family
6666766666667MCM P-loop domain
2222332222224Squalene/phytoene synthase
1111116Bacterial extracellular solute-binding proteins, family 5 Middle
11Bacterial extracellular solute-binding proteins, family 3
9979799998994FHA domain
4947494470486049505461581AMP-binding enzyme
3333433333334G-protein alpha subunit
9989979999996HMG (high mobility group) box
1211111112111311131112128His Kinase A (phospho-acceptor) domain
3333423332332Armadillo/beta-catenin-like repeat
3027262726172329262327281Tetratricopeptide repeat
3333333334334Ion transport protein
1111111111111DNA gyrase/topoisomerase IV, subunit A
988910598991094BRCA1 C Terminus (BRCT) domain
8878879998889Glycosyl transferases group 1
9787728787878Glycosyl transferase family 2
1111111111111SAM domain (Sterile alpha motif)
1111111111111linker histone H1 and H5 family
1111111111111Ribosomal protein L7/L12 C-terminal domain
67561512776131498Pectate lyase
3533233432536ribonuclease
1111111111111Urease, gamma subunit
5555555555555CoA-ligase
3233332950323434403039386Phosphopantetheine attachment site
4444444444444Formyl transferase
11delta endotoxin
10101099119109109106Metallopeptidase family M24
171417151441814161718164Leucine Rich Repeat
3743414245114248435265469alpha/beta hydrolase fold
3333333333333RNA polymerase Rpb2, domain 6
4444444444444PB1 domain
2222122222221Staphylococcal nuclease homologue
99991012999910104Rab-GTPase-TBC domain
1111111111111Tudor domain
1111111111111WH1 domain
4445434344342Zinc finger, ZZ type
1111111111111HRDC domain
11101011106111111910110CBS domain
2222322222223Ribosomal protein L13
2222122222221Ribosomal protein L4/L1 family
1111111111111Clp protease
3334443333437S1 RNA binding domain
111111111110HIUase/Transthyretin family
4444424445645AhpC/TSA family
4444444444444tRNA synthetases class I (W and Y)
1113UvrD/REP helicase N-terminal domain
5665496676565Rhodanese-like domain