PFAM Domains • Leptodontium sp. PMI_412 v1.0
Annotations/GenomesAcema1Cadsp1Glalo1Leptod1Marbr1Phisc1TotalAnnotation Description
PFAMs
11,88314,0329,20017,3317,17512,05671,677
11137 transmembrane receptor (rhodopsin family)
337 transmembrane receptor (Secretin family)
826759723863381ATPase family associated with various cellular activities (AAA)
518250873361364ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
14161417141590Elongation factor Tu GTP binding domain
20181319101797Helix-loop-helix DNA-binding domain
79683437Hsp20/alpha crystallin family
121292581076Hsp70 protein
913108111263KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11114SH2 domain
252724162225139SH3 domain
10101111101062Actin
1971941056527135723Ankyrin repeat
56431625PAN domain
77797845ADP-ribosylation factor family
262618321033145Eukaryotic aspartyl protease
45454426Cyclic nucleotide-binding domain
11Beta/Gamma crystallin
1111127Cytochrome c
22222313Double-stranded RNA binding motif
22241941919107EF hand
1122174Fe-4S binding domain
28232421Fibronectin type III domain
112Globin
192613281125122Glutathione S-transferase, C-terminal domain
1113129Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
913777952Homeodomain
44242420lactate/malate dehydrogenase, NAD binding domain
55555530Myosin head (motor domain)
182214131215462261,014Cytochrome P450
1851901392871041521,057Protein kinase domain
293820291430160Pyridine nucleotide-disulphide oxidoreductase
293425312326168Ras family
292920271831154Response regulator receiver domain
6153106848RNase H
636962556365377RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1717Reverse transcriptase (RNA-dependent DNA polymerase)
22232213Copper/zinc superoxide dismutase (SODC)
22122211Iron/manganese superoxide dismutases, alpha-hairpin domain
25361056818153Subtilase family
1312066821446136801Sugar (and other) transporter
17131114121784Thioredoxin
13223314Trypsin
44444424Tubulin/FtsZ family, GTPase domain
95612528von Willebrand factor type A domain
137148725155110573Zinc finger, C2H2 type
60655644259286Zinc finger, C3HC4 type (RING finger)
687512745Zinc knuckle
22232213Protein-tyrosine phosphatase
189303150284672161,209short chain dehydrogenase
971448512436119605Zinc-binding dehydrogenase
787106745Thiolase, N-terminal domain
272534321033161Beta-ketoacyl synthase, N-terminal domain
786548382Fe-2S iron-sulfur cluster binding domain
2111128Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
111091181059Glutamine amidotransferase class-I
10111010101061TCP-1/cpn60 chaperonin family
47344628Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
192314271514112E1-E2 ATPase
91081016861Core histone H2A/H2B/H3/H4
121116Copper binding proteins, plastocyanin/azurin family
1075105845Alpha amylase, catalytic domain
22322213Phorbol esters/diacylglycerol binding domain (C1 domain)
8710108952Bacterial transferase hexapeptide (six repeats)
33383424tRNA synthetases class I (I, L, M and V)
711797849Cyclin, N-terminal domain
658322592164314Carboxylesterase family
44444424DNA polymerase family B
66465633ATP synthase subunit C
597145848Peroxidase
1333729228112Beta-lactamase
55254627C-5 cytosine-specific DNA methylase
372924292136176Calcineurin-like phosphoesterase
222613291123124Cellulase (glycosyl hydrolase family 5)
78797745tRNA synthetases class II (D, K and N)
414738473642251Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
232615221223121Aminotransferase class I and II
11109981057Phosphoribosyl transferase domain
10101010101060Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111127Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1113Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
12191513151387C2 domain
181918111920105PH domain
1212102891485bZIP transcription factor
263621421523163Aldehyde dehydrogenase family
343483191431924201,960Fungal Zn(2)-Cys(6) binuclear cluster domain
293320301930161Cytochrome b5-like Heme/Steroid binding domain
66342526Oxidoreductase molybdopterin binding domain
182515241121114Oxidoreductase NAD-binding domain
363330402432195SNF2 family N-terminal domain
21222211Ribosomal protein S7p/S5e
262422262126145Ubiquitin-conjugating enzyme
810787747Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111127Dihydrofolate reductase
13106951255Chitin recognition protein
56383530Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
1013492846Cupin
21212210Annexin
34353220Eukaryotic-type carbonic anhydrase
1212118Chalcone and stilbene synthases, N-terminal domain
333433192-oxoacid dehydrogenases acyltransferase (catalytic domain)
108882844Catalase
1212219Disintegrin
641141733UDP-glucoronosyl and UDP-glucosyl transferase
131771381472Aminotransferase class-III
22122211Ribosomal protein S19
1111116DNA gyrase B
9125971254Thiamine pyrophosphate enzyme, central domain
54453425Lyase
22222212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
123Sodium:neurotransmitter symporter family
1211128Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
22211311Orotidine 5'-phosphate decarboxylase / HUMPS family
1112117Indole-3-glycerol phosphate synthase
12317Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
10121011101164Kinesin motor domain
403731382937212DnaJ domain
14141414141484Proteasome subunit
131491381269Major intrinsic protein
1111116ATP synthase
68393534Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
1111116Profilin
1122118Ribosomal protein L22p/L17e
22122211Ribosomal protein L14p/L23e
192112161418100Ubiquitin family
55555530Cofilin/tropomyosin-type actin-binding protein
2223221314-3-3 protein
56634327Alkaline phosphatase
14444118Zinc carboxypeptidase
518133682159313Aldo/keto reductase family
1416175131984Myb-like DNA-binding domain
44444424Forkhead domain
26361321Glycosyl hydrolases family 32 N-terminal domain
1112117Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
35343321FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
2222210
112Dehydrin
9128116955Flavodoxin
1111116Calreticulin family
211817221217107Common central domain of tyrosinase
1111101091162Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
404740464143257DEAD/DEAH box helicase
868885937885515Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22222212Ribosomal protein L5
78684841Pyridoxal-dependent decarboxylase conserved domain
25242217Citrate synthase, C-terminal domain
55565531GHMP kinases N terminal domain
68785741Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
1315915101678Pyridoxal-phosphate dependent enzyme
162618241518117NUDIX domain
55444931pfkB family carbohydrate kinase
2120624524100Glycosyl hydrolases family 28
42381523Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
212217261521122Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
1211139Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
55555530Calponin homology (CH) domain
56444528Glutamine amidotransferases class-II
22222212Ribosomal protein S15
21221210Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
611252228SRF-type transcription factor (DNA-binding and dimerisation domain)
88896948GATA zinc finger
767047343181339Amino acid permease
45582529Prolyl oligopeptidase family
22121210Ribosomal protein L30p/L7e
121211981567Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
57554531Aconitase family (aconitate hydratase)
78774740Glycosyl hydrolase family 10
64654732Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1211117Nucleoside diphosphate kinase
11Tetraspanin family
22221211Ribosomal protein S10p/S20e
55344425Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1211128Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
33444422Polyprenyl synthetase
44543424Hexokinase
111310215969Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
56462629Rieske [2Fe-2S] domain
1341211Phytochrome region
9117117954Biotin-requiring enzyme
1111116Phosphofructokinase
22222111Ribosomal protein S17
12132211Hydroxymethylglutaryl-coenzyme A reductase
44444525FGGY family of carbohydrate kinases, N-terminal domain
1113Sodium:dicarboxylate symporter family
15241132815105Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
111281081059Cytidine and deoxycytidylate deaminase zinc-binding region
2111117Molybdopterin oxidoreductase
121261571163Chromo (CHRromatin Organisation MOdifier) domain
33333217Phosphatidylinositol-specific phospholipase C, Y domain
53353423Phosphatidylinositol-specific phospholipase C, X domain
121661261264D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33332317Malic enzyme, N-terminal domain
232212126-phosphogluconate dehydrogenase, C-terminal domain
27271121833127Multicopper oxidase
181210981370WW domain
1111116Ribosomal RNA adenine dimethylase
1121229Yeast PIR protein repeat
125163109133101119750WD domain, G-beta repeat
68445532Heavy-metal-associated domain
45365629Adenylate kinase
32233316Phosphoglucomutase/phosphomannomutase, C-terminal domain
22222212Ribosomal protein S8
1122118Ribosomal protein S11
44444424LIM domain
33Matrixin
23122313Regulator of chromosome condensation (RCC1) repeat
22122211Ribosomal protein S13/S18
11
22232516chorismate binding enzyme
4433332060s Acidic ribosomal protein
54444526Prenyltransferase and squalene oxidase repeat
68736737Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
10108108955Bromodomain
1721122381596Acyl-CoA dehydrogenase, C-terminal domain
15151516151591Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
44443423Ribonuclease T2 family
33333318HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
151981651982Serine carboxypeptidase
11Scorpion short toxin, BmKK2
88888848Phosphatidylinositol 3- and 4-kinase
36351321Transketolase, thiamine diphosphate binding domain
64352727Glycosyl hydrolases family 11
43333420Inositol monophosphatase family
44444424Glutaredoxin
89422631Isocitrate lyase family
24222214Serine hydroxymethyltransferase
73273729Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
32323316KOW motif
111115Ribosomal protein L34
22232213RF-1 domain
56252828Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
57666636Protein phosphatase 2C
22342215Nucleotidyl transferase
6761021041Carbonic anhydrase
1114119Phosphoribulokinase / Uridine kinase family
11125107853Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
56553428Arginase family
66666636MCM P-loop domain
32232214Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 3
8891110955FHA domain
557351792563346AMP-binding enzyme
33433420G-protein alpha subunit
9119571152HMG (high mobility group) box
232617231527131His Kinase A (phospho-acceptor) domain
33323317Armadillo/beta-catenin-like repeat
414429202335192Tetratricopeptide repeat
63332219Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
1412119111067BRCA1 C Terminus (BRCT) domain
101081191159Glycosyl transferases group 1
69223931Glycosyl transferase family 2
29153424SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
4166169152Pectate lyase
1113118ribonuclease
1111116Urease, gamma subunit
44444424CoA-ligase
202229431030154Phosphopantetheine attachment site
33333318Formyl transferase
91191271058Metallopeptidase family M24
2017143131481Leucine Rich Repeat
659140183092336alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
43444423PB1 domain
23322214Staphylococcal nuclease homologue
1111101291164Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
54744630Zinc finger, ZZ type
1111116HRDC domain
111188101159CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
33534321S1 RNA binding domain
1111116HIUase/Transthyretin family
74343829AhpC/TSA family
54545629tRNA synthetases class I (W and Y)
22112210UvrD/REP helicase N-terminal domain
77596741Rhodanese-like domain
22223213Universal stress protein family
677653462871341Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
23222213AIR synthase related protein, N-terminal domain
881079850tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
11Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
121116PDZ domain
111451241056Class II Aldolase and Adducin N-terminal domain
44454223Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555530Fes/CIP4, and EFC/F-BAR homology domain
56445529IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
47544529Phospholipase D Active site motif
22191217Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
47464429RasGEF domain
46464428RasGEF N-terminal motif
99898952RhoGAP domain
66676637RhoGEF domain
33543422SPRY domain
33333318RNA polymerase Rpb1, domain 2
22222212Guanylate kinase
55455428Gelsolin repeat
55956737UBA/TS-N domain
222318151420112PHD-finger
1111116GGL domain
66666636HECT-domain (ubiquitin-transferase)
22212211Helix-hairpin-helix motif
1212219MSP (Major sperm protein) domain
56465430Ribonuclease III domain
22242214Region in Clathrin and VPS
33333217RanBP1 domain
22222212PPIC-type PPIASE domain
34343421Zn-finger in Ran binding protein and others
1818177141993Zinc finger C-x8-C-x5-C-x3-H type (and similar)
5222516Poly(ADP-ribose) polymerase catalytic domain
1111116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
909362233997404F-box domain
1111116Elongation factor 1 gamma, conserved domain
55352525Calpain family cysteine protease
33223215Copper fist DNA binding domain
56565633CRAL/TRIO domain
434721591831219BTB/POZ domain
23431518Ricin-type beta-trefoil lectin domain
1211117Inhibitor of Apoptosis domain
44453424Voltage gated chloride channel
74282528Caspase domain
133119151212102GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
254024411531176ABC transporter transmembrane region
1111Integrase core domain
91271351056FAD binding domain
1011131731266Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1112128HAMP domain
22322213ribosomal L5P family C-terminus
76564735Insulinase (Peptidase family M16)
33343319Dehydrogenase E1 component
1111116Lumazine binding domain
66666636Elongation factor G C-terminus
45554427HMGL-like
44444424DnaJ central domain
42222315Starch binding domain
22232213Ribosomal protein L1p/L10e family
10127127755Cation transporting ATPase, C-terminus
11149138964Cation transporter/ATPase, N-terminus
1212118dUTPase
57554531Aconitase C-terminal domain
43343421Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
232633301035157Acyl transferase domain
1111116Urease beta subunit
993103943Dihydrodipicolinate synthetase family
434835213337217haloacid dehalogenase-like hydrolase
6114102639Glycosyl hydrolases family 2
19261433717116Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
111115Acylphosphatase
4111119Adenylosuccinate synthetase
24231214Asparaginase, N-terminal
31222313Peptidase S24-like
1111116Inorganic pyrophosphatase
1216103061286Glycosyl hydrolases family 16
33333318Glycosyl hydrolases family 15
131792231377NADH:flavin oxidoreductase / NADH oxidase family
252415193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
33132315Glycosyl hydrolase family 20, catalytic domain
43333319HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
424530481940224GMC oxidoreductase
24222214Asparagine synthase
182816301219123Fungal cellulose binding domain
67577638Septin
1111116EF-1 guanine nucleotide exchange domain
2112118Homoserine dehydrogenase
610214739Flavin-binding monooxygenase-like
112LPXTG cell wall anchor motif
34433421tRNA synthetases class I (E and Q), catalytic domain
14161114tRNA synthetases class I (R)
44444424XPG N-terminal domain
15271226718105Metallo-beta-lactamase superfamily
3126F5/8 type C domain
32322315Choline/Carnitine o-acyltransferase
13121210Putative esterase
1111116Ferrochelatase
22232213Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
2111117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
121561861471Dioxygenase
33433319CNH domain
23232214Diacylglycerol kinase catalytic domain
119101061157Dual specificity phosphatase, catalytic domain
22232213P21-Rho-binding domain
12121213111272PX domain
55434425Ras association (RalGDS/AF-6) domain
65555632UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
122191991383Carbon-nitrogen hydrolase
34242419N-acetyltransferase
1111116Prephenate dehydratase
33333419Syntaxin
56545530Pumilio-family RNA binding repeat
66676738Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
22121210Histidinol dehydrogenase
45454426impB/mucB/samB family
111115
1111116Ribosomal L15
1113118Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
111115Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
11Stathmin family
1111116Translationally controlled tumour protein
78583738Glycosyl hydrolase family 7
44Ring hydroxylating alpha subunit (catalytic domain)
1111116RNA pseudouridylate synthase
44444424Histone deacetylase domain
66773635POT family
1112117PWWP domain
323622371626169SET domain
1418131552287Isochorismatase family
55563529Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
54464629XPG I-region
1111116Acetokinase family
34333319DNA photolyase
1113Cation-independent mannose-6-phosphate receptor repeat
1116211Nitroreductase family
11Zinc dependent phospholipase C
814683645Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
45444425Cullin family
2020111462192FAD binding domain
21172514436117O-methyltransferase domain
44464426EamA-like transporter family
211127
99888951ThiF family
1111116Ribosomal family S4e
92661531069Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
9114103946Ammonium Transporter Family
79586742Sulfate permease family
111115MATH domain
36243321Dehydratase family
35231317Transaldolase/Fructose-6-phosphate aldolase
35272322Mechanosensitive ion channel
1112117GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44444424Adaptor complexes medium subunit family
95676841Exonuclease
1222119Dipeptidyl peptidase IV (DPP IV) N-terminal region
4241148NB-ARC domain
11Lamin Tail Domain
214222321225154Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
22221211FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
33322215HCO3- transporter family
32222213Nucleosome assembly protein (NAP)
510464635Synaptobrevin
1111116GMP synthase C terminal domain
1113Phage lysozyme
98896949Adenosine/AMP deaminase
91381151157Oxidoreductase FAD-binding domain
621043934Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
23161215UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
33211414PAS fold
32222213Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
67686639Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
55465530Initiation factor 2 subunit family
3137PQQ enzyme repeat
22