PFAM Domains • Coprinopsis sclerotiger v1.0
Annotations/GenomesAmath1Copci1Copci_AmutBmut1Copmic2Copscl1Guyne1Marfi1Panst_KUC8834_1_1PleosPC9_1TotalAnnotation Description
PFAMs
7,0667,6787,7209,3259,1788,2589,4188,9937,91475,550
21147 transmembrane receptor (rhodopsin family)
394344484144515146407ATPase family associated with various cellular activities (AAA)
314645574450545337417ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
123EGF-like domain
141515161515161714137Elongation factor Tu GTP binding domain
101011141111151410106Helix-loop-helix DNA-binding domain
877397911667Hsp20/alpha crystallin family
788268888990Hsp70 protein
88788888871KH domain
11Kunitz/Bovine pancreatic trypsin inhibitor domain
11111117SH2 domain
243130322134292929259SH3 domain
111212131212151311111Actin
229380893327244222432Ankyrin repeat
788109788873ADP-ribosylation factor family
151313131219203323161Eukaryotic aspartyl protease
33333443329Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
111111219Cytochrome c
866876117665Double-stranded RNA binding motif
1819192320191720155EF hand
12113131134Fe-4S binding domain
111211119Fibronectin type III domain
161413138718137109Glutathione S-transferase, C-terminal domain
13322111216Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
213Hemopexin
9101018101112119100Homeodomain
2222121113Laminin EGF domain
22232322321lactate/malate dehydrogenase, NAD binding domain
45574555545Myosin head (motor domain)
74134134173941663121251481,360Cytochrome P450
1321361361991831582611851581,548Protein kinase domain
151717221215181921156Pyridine nucleotide-disulphide oxidoreductase
233234343325283126266Ras family
888871010101180Response regulator receiver domain
3223014282815104RNase H
696468806572736767625RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
134Reverse transcriptase (RNA-dependent DNA polymerase)
122181116Copper/zinc superoxide dismutase (SODC)
22222243221Iron/manganese superoxide dismutases, alpha-hairpin domain
17121226376959133Subtilase family
232021262246433931271Sugar (and other) transporter
1099101114111314101Thioredoxin
55565567650Tubulin/FtsZ family, GTPase domain
2346353531von Willebrand factor type A domain
436067792497746856568Zinc finger, C2H2 type
524855681167627159493Zinc finger, C3HC4 type (RING finger)
235211818817311728393Zinc knuckle
22222212217Protein-tyrosine phosphatase
4449486139959612377632short chain dehydrogenase
312929422139485241332Zinc-binding dehydrogenase
44466444440Thiolase, N-terminal domain
42362548236Beta-ketoacyl synthase, N-terminal domain
333313323242Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11121111110Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
988108798875Glutamine amidotransferase class-I
12101112101010111096TCP-1/cpn60 chaperonin family
11ATP synthase A chain
54434445336Glutamine synthetase, catalytic domain
1111111119Triosephosphate isomerase
91111111914141813120E1-E2 ATPase
151616201418151918151Core histone H2A/H2B/H3/H4
11321210Copper binding proteins, plastocyanin/azurin family
8897511713977Alpha amylase, catalytic domain
56654667348Phorbol esters/diacylglycerol binding domain (C1 domain)
455745104549Bacterial transferase hexapeptide (six repeats)
33334333328tRNA synthetases class I (I, L, M and V)
111212181211122311122Cyclin, N-terminal domain
221919281733514428261Carboxylesterase family
44454444437DNA polymerase family B
33333333327ATP synthase subunit C
2446366121053Peroxidase
1522114268353Beta-lactamase
34545584543C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
223131302327323727260Calcineurin-like phosphoesterase
9111216236121613118Cellulase (glycosyl hydrolase family 5)
55565566548tRNA synthetases class II (D, K and N)
363636383642444035343Mitochondrial carrier protein
151617191516201713148Aminotransferase class I and II
66674775755Phosphoribosyl transferase domain
121414121114141311115Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
1111111119Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22222222218Ribosomal protein S12/S23
11111211110Chaperonin 10 Kd subunit
161716141415181618144C2 domain
18191915720202216156PH domain
66758795659bZIP transcription factor
131212131421261718146Aldehyde dehydrogenase family
514248634311310113741639Fungal Zn(2)-Cys(6) binuclear cluster domain
232424232122232422206Cytochrome b5-like Heme/Steroid binding domain
12232231218Oxidoreductase molybdopterin binding domain
7101013781110783Oxidoreductase NAD-binding domain
212625352126242725230SNF2 family N-terminal domain
22232232220Ribosomal protein S7p/S5e
202323232421222321200Ubiquitin-conjugating enzyme
65555567549Isocitrate/isopropylmalate dehydrogenase
22222222218Ribosomal Proteins L2, RNA binding domain
22232222219Hsp90 protein
22222222218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
112Chitin recognition protein
62254672539Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
112326217Cupin
13361111118Annexin
55Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
333533333292-oxoacid dehydrogenases acyltransferase (catalytic domain)
14453433229Catalase
11121131112Disintegrin
2111115UDP-glucoronosyl and UDP-glucosyl transferase
55665657550Aminotransferase class-III
22222222218Ribosomal protein S19
1111111119DNA gyrase B
34442534534Thiamine pyrophosphate enzyme, central domain
33353453332Lyase
22232222118Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111112110Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
22221221115Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
22222375227Aromatic amino acid lyase
1111111119Pyruvate kinase, barrel domain
9899910912984Kinesin motor domain
283230373230322932282DnaJ domain
141414171414151614132Proteasome subunit
52143446736Major intrinsic protein
11211111110ATP synthase
32232433325Glycosyl hydrolase family 1
111211111103'5'-cyclic nucleotide phosphodiesterase
1111111119Profilin
21112221113Ribosomal protein L22p/L17e
22232222219Ribosomal protein L14p/L23e
141716241818131517152Ubiquitin family
55555555545Cofilin/tropomyosin-type actin-binding protein
2223222121814-3-3 protein
52221332525Alkaline phosphatase
1111113110Zinc carboxypeptidase
222222391939516046320Aldo/keto reductase family
11131315713151413114Myb-like DNA-binding domain
55597776556Forkhead domain
2114Glycosyl hydrolases family 32 N-terminal domain
11112111211Ribosomal protein L16p/L10e
22222222218Ribosomal protein S14p/S29e
33365543840FKBP-type peptidyl-prolyl cis-trans isomerase
111112119Glutathione peroxidase
1222111212
566104687658Flavodoxin
11Protamine P1
1111111119Calreticulin family
1191821457424121Common central domain of tyrosinase
877988771071Aminotransferase class-V
22271222222Ribonucleotide reductase, small chain
435151634945406056458DEAD/DEAH box helicase
7092891267185809889800Helicase conserved C-terminal domain
1113Fructose-bisphosphate aldolase class-I
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22232212218Ribosomal protein L23
11111112110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111111119Ribosomal protein L5
25555366542Pyridoxal-dependent decarboxylase conserved domain
35444343333Citrate synthase, C-terminal domain
54454555542GHMP kinases N terminal domain
76666686758Biotin carboxylase, N-terminal domain
21111131112Tryptophan synthase alpha chain
7777781210772Pyridoxal-phosphate dependent enzyme
141717181915171317147NUDIX domain
54475556546pfkB family carbohydrate kinase
533821688659Glycosyl hydrolases family 28
22222222218Ribosomal protein L3
22222222218Ribosomal protein L11, RNA binding domain
8778710881073Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
639Lipoxygenase
44444444436ATP synthase alpha/beta chain, C terminal domain
54444557442Calponin homology (CH) domain
54452475541Glutamine amidotransferases class-II
22232222219Ribosomal protein S15
25573446339Thaumatin family
1111111119Fructose-1-6-bisphosphatase, N-terminal domain
11121115114Ribonucleotide reductase, all-alpha domain
22222242220Ribosomal protein S2
41222243222SRF-type transcription factor (DNA-binding and dimerisation domain)
11111115111018278122GATA zinc finger
16131419729242419165Amino acid permease
11Bacterial regulatory proteins, crp family
45556538849Prolyl oligopeptidase family
11132111112Ribosomal protein L30p/L7e
755105913131178Histidine phosphatase superfamily (branch 2)
11121111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444555439Aconitase family (aconitate hydratase)
46685445345Glycosyl hydrolase family 10
53393222130Glycosyl hydrolases family 17
22222222218Ribosomal protein S5, N-terminal domain
22122222217Nucleoside diphosphate kinase
13325115324Tetraspanin family
1236Galactoside-binding lectin
22222122217Ribosomal protein S10p/S20e
13373239435Arrestin (or S-antigen), N-terminal domain
12111111110Phosphoglucose isomerase
11121111110Carbohydrate phosphorylase
11121111312SecY translocase
112111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222218Ribosomal protein L6
54454463439Polyprenyl synthetase
22222222218Hexokinase
74458875654Dynamin family
11111122111Transcription factor TFIID (or TATA-binding protein, TBP)
34433244229Rieske [2Fe-2S] domain
11Phytochrome region
44Proton-conducting membrane transporter
9991198138985Biotin-requiring enzyme
1111111119Phosphofructokinase
22222222218Ribosomal protein S17
11191111117Hydroxymethylglutaryl-coenzyme A reductase
43343333329FGGY family of carbohydrate kinases, N-terminal domain
1078988991078Enoyl-CoA hydratase/isomerase
22232222219Ribosomal protein S9/S16
33323322223Transcription factor TFIIB repeat
555651068757Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
17786876171490Chromo (CHRromatin Organisation MOdifier) domain
33333333327Phosphatidylinositol-specific phospholipase C, Y domain
33345333431Phosphatidylinositol-specific phospholipase C, X domain
46666667552D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22332232322Malic enzyme, N-terminal domain
111111112106-phosphogluconate dehydrogenase, C-terminal domain
141717191019231111141Multicopper oxidase
11Granulin
101212109101210792WW domain
22212222217Ribosomal RNA adenine dimethylase
1171241251501141131241251341,126WD domain, G-beta repeat
32222532425Heavy-metal-associated domain
33333333327Adenylate kinase
12222122216Phosphoglucomutase/phosphomannomutase, C-terminal domain
22212111113Ribosomal protein S8
22222233220Ribosomal protein S11
65679666455LIM domain
33313433326Regulator of chromosome condensation (RCC1) repeat
22222222218Ribosomal protein S13/S18
22222222218chorismate binding enzyme
3333333432860s Acidic ribosomal protein
44454445539Prenyltransferase and squalene oxidase repeat
77775678660Protein kinase C terminal domain
11131111111Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
10111115101010111098Bromodomain
1199108710111085Acyl-CoA dehydrogenase, C-terminal domain
151515181515152116145Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
3225416Ribonuclease T2 family
11Gonadotropin-releasing hormone
43453534637HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
11121111110Urease alpha-subunit, N-terminal domain
155410416172313107Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
888108879874Phosphatidylinositol 3- and 4-kinase
22242432223Transketolase, thiamine diphosphate binding domain
676315230Glycosyl hydrolases family 11
1111116WHEP-TRS domain
32232422222Inositol monophosphatase family
54544554541Glutaredoxin
53342385740Isocitrate lyase family
11111221111Serine hydroxymethyltransferase
22222724225Iron-containing alcohol dehydrogenase
21122122215Ribosomal protein L10
54443555540KOW motif
1111111119Ribosomal protein L34
11Ribosomal protein L33
13353222324RF-1 domain
1111413315Sodium:solute symporter family
11111121110Imidazoleglycerol-phosphate dehydratase
11121111110DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
11111112110Glucose-6-phosphate dehydrogenase, NAD binding domain
688107101016984Protein phosphatase 2C
11132322318Nucleotidyl transferase
57776343850Carbonic anhydrase
1111111119Phosphoribulokinase / Uridine kinase family
98810101510131194Fatty acid desaturase
66676666655MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
22221644528Arginase family
66666666654MCM P-loop domain
11112111211Squalene/phytoene synthase
988810117161087FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
263031262846544334318AMP-binding enzyme
131616192015262914168G-protein alpha subunit
162626242021242117195HMG (high mobility group) box
11Cytochrome c oxidase subunit III
54464776548His Kinase A (phospho-acceptor) domain
22252325225Armadillo/beta-catenin-like repeat
272928401131313019246Tetratricopeptide repeat
43343433229Ion transport protein
12111111110DNA gyrase/topoisomerase IV, subunit A
910121451110121194BRCA1 C Terminus (BRCT) domain
66664678655Glycosyl transferases group 1
44473444337Glycosyl transferase family 2
1331222216SAM domain (Sterile alpha motif)
14452435331linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
1111123818Pectate lyase
11213614ribonuclease
11121111110Urease, gamma subunit
33343334329CoA-ligase
4666412128664Phosphopantetheine attachment site
22222321319Formyl transferase
9991011912101089Metallopeptidase family M24
14151513112161216114Leucine Rich Repeat
31343557749625346374alpha/beta hydrolase fold
33333332326RNA polymerase Rpb2, domain 6
45555564443PB1 domain
22232222219Staphylococcal nuclease homologue
10991112111110992Rab-GTPase-TBC domain
1111111119Tudor domain
11112111211WH1 domain
24443553333Zinc finger, ZZ type
11111117HRDC domain
911119710910783CBS domain
22232222219Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
1111111119Clp protease
46554334337S1 RNA binding domain
11111211110HIUase/Transthyretin family
34444755541AhpC/TSA family
44454444437tRNA synthetases class I (W and Y)
11121111110UvrD/REP helicase N-terminal domain
4454106104451Rhodanese-like domain
22222222218Universal stress protein family
232830472227363827278Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22232222219AIR synthase related protein, N-terminal domain
67765666655tRNA synthetase class II core domain (G, H, P, S and T)
112Phage integrase family
22232332221Tetrapyrrole (Corrin/Porphyrin) Methylases
11111121110Glycosyl transferase family, a/b domain
12223354123Class II Aldolase and Adducin N-terminal domain
42243444330Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55576665550Fes/CIP4, and EFC/F-BAR homology domain
34472345537IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
3333334325Phospholipase D Active site motif
11113111212Regulator of G protein signaling domain
44444444537GTPase-activator protein for Ras-like GTPase
71011107677974RasGEF domain
7910107777872RasGEF N-terminal motif
131211141311141312113RhoGAP domain
141414161515201413135RhoGEF domain
44444444436SPRY domain
33383333534RNA polymerase Rpb1, domain 2
1111111119Guanylate kinase
34443445334Gelsolin repeat
91110106899880UBA/TS-N domain
171818191516192014156PHD-finger
2222111213GGL domain
55575555547HECT-domain (ubiquitin-transferase)
32121221317Helix-hairpin-helix motif
13411121317MSP (Major sperm protein) domain
96663875757Ribonuclease III domain
22234222221Region in Clathrin and VPS
33333334328RanBP1 domain
22221223218PPIC-type PPIASE domain
24331334124Zn-finger in Ran binding protein and others
21222037929252521209Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
35779455247Poly(ADP-ribose) polymerase catalytic domain
22222232118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
59197201308331261741131091,320F-box domain
1111111119Elongation factor 1 gamma, conserved domain
19886244143Calpain family cysteine protease
22232222219Copper fist DNA binding domain
77768788664CRAL/TRIO domain
101919232113112810154BTB/POZ domain
5171714141401622146Ricin-type beta-trefoil lectin domain
1111111119Inhibitor of Apoptosis domain
33333333226Voltage gated chloride channel
4151522152991312134Caspase domain
6101020481091188GDSL-like Lipase/Acylhydrolase
11111112110Poly-adenylate binding protein, unique domain
1111111119POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
132321241919303115195ABC transporter transmembrane region
1113Integrase core domain
33343475436FAD binding domain
12221125218Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
12111311314HAMP domain
22222222218ribosomal L5P family C-terminus
55555576447Insulinase (Peptidase family M16)
44444444335Dehydrogenase E1 component
1111111119Lumazine binding domain
67787777763Elongation factor G C-terminus
54454564441HMGL-like
44444444335DnaJ central domain
23311334323Starch binding domain
22223322119Ribosomal protein L1p/L10e family
46667786757Cation transporting ATPase, C-terminus
5888117108873Cation transporter/ATPase, N-terminus