PFAM Domains • Rhodosporidium toruloides IFO1236_1
Annotations/GenomesAgahy1Croqu1Hetpy1Mellp1Mixos1Pucgr1Pucst1Rhosp1Rhoto1Rhoto_IFO1236_1Schco3Trisp1TotalAnnotation Description
PFAMs
5,7225,9955,5785,1325,5626,7846,2275,7286,4586,3378,5905,57773,690
117 transmembrane receptor (rhodopsin family)
303233273035263336344332391ATPase family associated with various cellular activities (AAA)
302828282925283030294668399ABC transporter
44444544544450ATP synthase alpha/beta family, nucleotide-binding domain
11121118EGF-like domain
131214121317121313131513160Elongation factor Tu GTP binding domain
9797879899139104Helix-loop-helix DNA-binding domain
151345928Hsp20/alpha crystallin family
887779137897797Hsp70 protein
88888887779793KH domain
1111111111111SH2 domain
232325252028262323232720286SH3 domain
9995109999101110109Actin
171517141716161719186016242Ankyrin repeat
213PAN domain
79776887777787ADP-ribosylation factor family
11191323381614121212266202Eukaryotic aspartyl protease
33323323333334Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
1124Cytochrome b/b6/petB
11111111111112Cytochrome c
1111111321325Double-stranded RNA binding motif
201616221521211315152015209EF hand
111112212211164Fe-4S binding domain
111112221113Fibronectin type III domain
112Globin
764498661515159104Glutathione S-transferase, C-terminal domain
11121122221117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
878278666611580Homeodomain
11114Laminin EGF domain
22232222222225lactate/malate dehydrogenase, NAD binding domain
54535575556661Myosin head (motor domain)
132610231416207151411431303Cytochrome P450
1081261421189511212498101102162951,383Protein kinase domain
111011810861213131110123Pyridine nucleotide-disulphide oxidoreductase
252625302425232123232726298Ras family
119141015914161718124149Response regulator receiver domain
226212198710582RNase H
556964705785735256577059767RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2727Retroviral aspartyl protease
111213835Reverse transcriptase (RNA-dependent DNA polymerase)
3321510235Copper/zinc superoxide dismutase (SODC)
22131121223222Iron/manganese superoxide dismutases, alpha-hairpin domain
4959514113663580Subtilase family
342222291316213437414117327Sugar (and other) transporter
1191188815111413139130Thioredoxin
45553565565660Tubulin/FtsZ family, GTPase domain
224111223220von Willebrand factor type A domain
3045357931524133343410037551Zinc finger, C2H2 type
3441313635110753539387130575Zinc finger, C3HC4 type (RING finger)
9421648814248814132215385Zinc knuckle
22512252222330Protein-tyrosine phosphatase
5127293150292644515211242544short chain dehydrogenase
221219131911122632324727272Zinc-binding dehydrogenase
37454456664761Thiolase, N-terminal domain
12111211113520Beta-ketoacyl synthase, N-terminal domain
534332244434412Fe-2S iron-sulfur cluster binding domain
11111112111113Enolase, C-terminal TIM barrel domain
145Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
67878767878786Glutamine amidotransferase class-I
910109111214911111010126TCP-1/cpn60 chaperonin family
112ATP synthase A chain
23243341233131Glutamine synthetase, catalytic domain
11111111111213Triosephosphate isomerase
810121312101791211912135E1-E2 ATPase
151629191124151715152213211Core histone H2A/H2B/H3/H4
11125Copper binding proteins, plastocyanin/azurin family
153624343312147Alpha amylase, catalytic domain
23334511545339Phorbol esters/diacylglycerol binding domain (C1 domain)
68585876664574Bacterial transferase hexapeptide (six repeats)
23353583333546tRNA synthetases class I (I, L, M and V)
1189129106111111139120Cyclin, N-terminal domain
310923867989263121Carboxylesterase family
44444664544453DNA polymerase family B
34344323333439ATP synthase subunit C
12222222222122Peroxidase
224433624Beta-lactamase
22223221622C-5 cytosine-specific DNA methylase
213NADH dehydrogenase
212218181917182021212418237Calcineurin-like phosphoesterase
26173982116349Cellulase (glycosyl hydrolase family 5)
54444474456859tRNA synthetases class II (D, K and N)
333333323434413636363736421Mitochondrial carrier protein
161615111315171719171611183Aminotransferase class I and II
66657896667779Phosphoribosyl transferase domain
131213141114131112121413152Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111111111112Phosphoglycerate kinase
22222222222224Ribosomal protein S4/S9 N-terminal domain
22232322222226Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
11111111111112Chaperonin 10 Kd subunit
13101410137101112121812142C2 domain
202020142018151822221920228PH domain
7494753813106682bZIP transcription factor
10131212812181112121610146Aldehyde dehydrogenase family
523354342924194576668848568Fungal Zn(2)-Cys(6) binuclear cluster domain
171817152119211923222521238Cytochrome b5-like Heme/Steroid binding domain
112123111Oxidoreductase molybdopterin binding domain
667776568711783Oxidoreductase NAD-binding domain
181720301658272222222218292SNF2 family N-terminal domain
22222222332226Ribosomal protein S7p/S5e
172017191917181919192119224Ubiquitin-conjugating enzyme
55555267555560Isocitrate/isopropylmalate dehydrogenase
22222212222223Ribosomal Proteins L2, RNA binding domain
22223123333228Hsp90 protein
22222242222226Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111121111113Dihydrofolate reductase
11Chitin recognition protein
510410376332558Cysteine-rich secretory protein family
11111211111113Ribosomal protein S3, C-terminal domain
11136Cupin
11Annexin
22Eukaryotic-type carbonic anhydrase
233533434333392-oxoacid dehydrogenases acyltransferase (catalytic domain)
25182652222138Catalase
12121231111117Disintegrin
1113UDP-glucoronosyl and UDP-glucosyl transferase
756451155555568Aminotransferase class-III
2222222222222Ribosomal protein S19
11111211111113DNA gyrase B
32142114334331Thiamine pyrophosphate enzyme, central domain
33333323333335Lyase
11212112222118Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
11211111111113Adenylate and Guanylate cyclase catalytic domain
11111111111112ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
21111112222117Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
4121221112118Aromatic amino acid lyase
11111111111112Pyruvate kinase, barrel domain
91191171312888106112Kinesin motor domain
263324502532322729293025362DnaJ domain
141914141415131315161414175Proteasome subunit
213316810128663289Major intrinsic protein
11111121111113ATP synthase
1135Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
11111111111112Profilin
12121111111215Ribosomal protein L22p/L17e
22222212222223Ribosomal protein L14p/L23e
12111011999142220137147Ubiquitin family
44425344447449Cofilin/tropomyosin-type actin-binding protein
2222222222212314-3-3 protein
22123323333330Alkaline phosphatase
1121112312Zinc carboxypeptidase
22910121012101417176012205Aldo/keto reductase family
121214107711111111119126Myb-like DNA-binding domain
55433222228341Forkhead domain
142122111217Glycosyl hydrolases family 32 N-terminal domain
11111111111112Ribosomal protein L16p/L10e
22211222222222Ribosomal protein S14p/S29e
45344343335243FKBP-type peptidyl-prolyl cis-trans isomerase
11111111111112Glutathione peroxidase
11121111222217
44653554447758Flavodoxin
11Protamine P1
11Tropomyosin
11111111111112Calreticulin family
82111Common central domain of tyrosinase
54535645559359Aminotransferase class-V
21112112223220Ribonucleotide reductase, small chain
363639453969484144426635540DEAD/DEAH box helicase
646370916315812073767497651,014Helicase conserved C-terminal domain
11111321111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
21211112222219Ribosomal protein L23
11111111111112Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211111111113Ribosomal protein L5
55355215567554Pyridoxal-dependent decarboxylase conserved domain
12222221323224Citrate synthase, C-terminal domain
54555655555459GHMP kinases N terminal domain
45565556665765Biotin carboxylase, N-terminal domain
11121221211217Tryptophan synthase alpha chain
766678106878988Pyridoxal-phosphate dependent enzyme
111210151210121112111414144NUDIX domain
45334544446450pfkB family carbohydrate kinase
1311111312Glycosyl hydrolases family 28
22222222223225Ribosomal protein L3
22122111222220Ribosomal protein L11, RNA binding domain
1379610138111111913121Histidine phosphatase superfamily (branch 1)
11111141221117Thymidylate synthase
44444515644449ATP synthase alpha/beta chain, C terminal domain
45443554445451Calponin homology (CH) domain
46445745445456Glutamine amidotransferases class-II
22321232212224Ribosomal protein S15
232313245530'Cold-shock' DNA-binding domain
3231743431141Thaumatin family
12111121111114Fructose-1-6-bisphosphatase, N-terminal domain
2111111111112Ribonucleotide reductase, all-alpha domain
22222332222226Ribosomal protein S2
33433223444944SRF-type transcription factor (DNA-binding and dimerisation domain)
107106877101211127107GATA zinc finger
141921171220151721192111207Amino acid permease
54526445557557Prolyl oligopeptidase family
12112111111215Ribosomal protein L30p/L7e
65438577759369Histidine phosphatase superfamily (branch 2)
11111111111112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444464444450Aconitase family (aconitate hydratase)
6554525Glycosyl hydrolase family 10
11211111211Glycosyl hydrolases family 17
22222222222224Ribosomal protein S5, N-terminal domain
13222112212120Nucleoside diphosphate kinase
1113Tetraspanin family
11111111112113Ribosomal protein S10p/S20e
342113435228Arrestin (or S-antigen), N-terminal domain
12111111111113Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111111111112SecY translocase
11111111112113Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222322222225Ribosomal protein L6
33363463336447Polyprenyl synthetase
22232422222227Hexokinase
54533663339353Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
11111111111213Transcription factor TFIID (or TATA-binding protein, TBP)
43244334442138Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
111115Phytochrome region
224Proton-conducting membrane transporter
57797788989993Biotin-requiring enzyme
11121151111117Phosphofructokinase
22212222122222Ribosomal protein S17
11111131111114Hydroxymethylglutaryl-coenzyme A reductase
33222332223229FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
48798897779891Enoyl-CoA hydratase/isomerase
22222222222224Ribosomal protein S9/S16
35222322222229Transcription factor TFIIB repeat
55655525986566Cytidine and deoxycytidylate deaminase zinc-binding region
11111132221117Molybdopterin oxidoreductase
6753183481129489Chromo (CHRromatin Organisation MOdifier) domain
21111111114217Phosphatidylinositol-specific phospholipase C, Y domain
22221211113220Phosphatidylinositol-specific phospholipase C, X domain
93634116457655D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1121212223118Malic enzyme, N-terminal domain
211111211221166-phosphogluconate dehydrogenase, C-terminal domain
42031811294446186Multicopper oxidase
99677666879686WW domain
11111122112115Ribosomal RNA adenine dimethylase
9897971051011061091041071061321051,267WD domain, G-beta repeat
12423222224531Heavy-metal-associated domain
33353443333340Adenylate kinase
21122212221220Phosphoglucomutase/phosphomannomutase, C-terminal domain
21112212211218Ribosomal protein S8
11111212131116Ribosomal protein S11
66564664666566LIM domain
11Matrixin
42224122333331Regulator of chromosome condensation (RCC1) repeat
22222223222225Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
12222422222124chorismate binding enzyme
3333323333333560s Acidic ribosomal protein
56784974444466Prenyltransferase and squalene oxidase repeat
67765895777579Protein kinase C terminal domain
112111111111Single-strand binding protein family
11111211111113S-adenosylmethionine synthetase, N-terminal domain
889109899881110107Bromodomain
2881010109111212911112Acyl-CoA dehydrogenase, C-terminal domain
161915181214151416151712183Ubiquitin carboxyl-terminal hydrolase
111111111110Ribosomal protein L36
111111111110Ribonuclease T2 family
657676481094779HSF-type DNA-binding
2222232222223SRP54-type protein, GTPase domain
1111121111213Urease alpha-subunit, N-terminal domain
7105117122044410397Serine carboxypeptidase
877118887888997Phosphatidylinositol 3- and 4-kinase
21112112113117Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
111121222114WHEP-TRS domain
32222223337233Inositol monophosphatase family
54455465555457Glutaredoxin
22222222223225Isocitrate lyase family
11111211111113Serine hydroxymethyltransferase
11112112334121Iron-containing alcohol dehydrogenase
12222222222223Ribosomal protein L10
43663334555350KOW motif
11112111110Ribosomal protein L34
111115Ribosomal protein L33
32221123223225RF-1 domain
22221211Sodium:solute symporter family
11111121111113Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
11111111111112IMP dehydrogenase / GMP reductase domain
1112111112113Glucose-6-phosphate dehydrogenase, NAD binding domain
566556566613675Protein phosphatase 2C
24242322221127Nucleotidyl transferase
33123222332127Carbonic anhydrase
1111111119Phosphoribulokinase / Uridine kinase family
5657581245413680Fatty acid desaturase
66656566666872MutS domain V
11111121111113Delta-aminolevulinic acid dehydratase
21212112224121Arginase family
66686776666676MCM P-loop domain
22122222221222Squalene/phytoene synthase
85865448669675FHA domain
82012131912121416173123197AMP-binding enzyme
91211634847715591G-protein alpha subunit
8713881177983510131HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
76116114513141491101His Kinase A (phospho-acceptor) domain
24333222344234Armadillo/beta-catenin-like repeat
242223212027221931302723289Tetratricopeptide repeat
22122222333125Ion transport protein
13111211111115DNA gyrase/topoisomerase IV, subunit A
109861169121010107108BRCA1 C Terminus (BRCT) domain
65556659887474Glycosyl transferases group 1
34333325444139Glycosyl transferase family 2
112111310SAM domain (Sterile alpha motif)
111111233115linker histone H1 and H5 family
11111111111112Ribosomal protein L7/L12 C-terminal domain
732416Pectate lyase
22ribonuclease
1111121111213Urease, gamma subunit
33333433333539CoA-ligase
342234333316450Phosphopantetheine attachment site
33232222222328Formyl transferase
7797678810811795Metallopeptidase family M24
1517162011151517161516