PFAM Domains • Amylomyces rouxii NRRL 5866 v1.0
Annotations/GenomesAmyrou1Rhich1Rhimi_ATCC11559_1Rhimi_ATCC52814_1Rhior3Spoumb1TotalAnnotation Description
PFAMs
12,79915,2568,4788,51212,21810,83268,095
1127 transmembrane receptor (Secretin family)
351313167 transmembrane sweet-taste receptor of 3 GCPR
476537375144281ATPase family associated with various cellular activities (AAA)
446032334436249ABC transporter
7486111046ATP synthase alpha/beta family, nucleotide-binding domain
31116EGF-like domain
223017192416128Elongation factor Tu GTP binding domain
627442405246316Helix-loop-helix DNA-binding domain
314773135Hsp20/alpha crystallin family
20181010181591Hsp70 protein
16221413161192KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11114SH2 domain
339148505534311SH3 domain
12181111151178Actin
169546496511282Ankyrin repeat
131398111367ADP-ribosylation factor family
333820203533179Eukaryotic aspartyl protease
912779953Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
23122212Cytochrome c
1111116Double-stranded RNA binding motif
2553134482172EF hand
4115114Fe-4S binding domain
1113Fibronectin type III domain
14222112Globin
81910912462Glutathione S-transferase, C-terminal domain
36334322Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
315128293729205Homeodomain
56334223lactate/malate dehydrogenase, NAD binding domain
192816161914112Myosin head (motor domain)
446331314864281Cytochrome P450
3113862072112962621,673Protein kinase domain
202815152113112Pyridine nucleotide-disulphide oxidoreductase
728551516557381Ras family
242716162121125Response regulator receiver domain
1214RNase H
107165989511296673RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
14950Retroviral aspartyl protease
45470515Reverse transcriptase (RNA-dependent DNA polymerase)
56335426Copper/zinc superoxide dismutase (SODC)
221128Iron/manganese superoxide dismutases, alpha-hairpin domain
262715162418126Subtilase family
364222224633201Sugar (and other) transporter
15241415151497Thioredoxin
15334117Trypsin
1198811451Tubulin/FtsZ family, GTPase domain
31147868813832522Zinc finger, C2H2 type
6774850415227Zinc finger, C3HC4 type (RING finger)
2337182013212242Zinc knuckle
68558638Protein-tyrosine phosphatase
284927263127188short chain dehydrogenase
343922232817163Zinc-binding dehydrogenase
611557640Thiolase, N-terminal domain
43333319Beta-ketoacyl synthase, N-terminal domain
184451232Fe-2S iron-sulfur cluster binding domain
24222113Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
1017999761Glutamine amidotransferase class-I
16161011181283TCP-1/cpn60 chaperonin family
610556638Glutamine synthetase, catalytic domain
2211129Triosephosphate isomerase
424825263431206E1-E2 ATPase
15131413201388Core histone H2A/H2B/H3/H4
34223115Alpha amylase, catalytic domain
10241313131083Phorbol esters/diacylglycerol binding domain (C1 domain)
817769754Bacterial transferase hexapeptide (six repeats)
78447636tRNA synthetases class I (I, L, M and V)
153318191712114Cyclin, N-terminal domain
22223213Carboxylesterase family
48446531DNA polymerase family B
68445633ATP synthase subunit C
1111116Legume lectin domain
26333320Peroxidase
2114Beta-lactamase
1211117C-5 cytosine-specific DNA methylase
395030313732219Calcineurin-like phosphoesterase
76444530Cellulase (glycosyl hydrolase family 5)
710667642tRNA synthetases class II (D, K and N)
649054536355379Mitochondrial carrier protein
11recA bacterial DNA recombination protein
213418182221134Aminotransferase class I and II
416101015560Phosphoribosyl transferase domain
172718171715111Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
22112210Phosphoglycerate kinase
52435423Ribosomal protein S4/S9 N-terminal domain
56446429Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
234120202622152C2 domain
4010250536039344PH domain
424930293832220bZIP transcription factor
16221212151491Aldehyde dehydrogenase family
497737463041280Fungal Zn(2)-Cys(6) binuclear cluster domain
366939384133256Cytochrome b5-like Heme/Steroid binding domain
111115Oxidoreductase molybdopterin binding domain
16231313141190Oxidoreductase NAD-binding domain
273622222625158SNF2 family N-terminal domain
56335426Ribosomal protein S7p/S5e
274322222624164Ubiquitin-conjugating enzyme
712779850Isocitrate/isopropylmalate dehydrogenase
64445427Ribosomal Proteins L2, RNA binding domain
58445329Hsp90 protein
44224319Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
14221212Dihydrofolate reductase
24222214Cysteine-rich secretory protein family
53443423Ribosomal protein S3, C-terminal domain
664464302-oxoacid dehydrogenases acyltransferase (catalytic domain)
46334222Catalase
32223315Disintegrin
13115712553UDP-glucoronosyl and UDP-glucosyl transferase
69556435Aminotransferase class-III
54235423Ribosomal protein S19
1211117DNA gyrase B
54335929Thiamine pyrophosphate enzyme, central domain
46334323Lyase
37333322Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
33223316Ferritin-like domain
44223318Adenylate and Guanylate cyclase catalytic domain
2211219ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
11Aromatic amino acid lyase
46335526Pyruvate kinase, barrel domain
344626283334201Kinesin motor domain
446735353834253DnaJ domain
262614142617123Proteasome subunit
1111228Major intrinsic protein
22112210ATP synthase
996688463'5'-cyclic nucleotide phosphodiesterase
23222213Profilin
58445430Ribosomal protein L22p/L17e
64336325Ribosomal protein L14p/L23e
203520192822144Ubiquitin family
912668748Cofilin/tropomyosin-type actin-binding protein
7844753514-3-3 protein
55334222Alkaline phosphatase
203418181913122Aldo/keto reductase family
256131313324205Myb-like DNA-binding domain
131377121062Forkhead domain
42112111Ribosomal protein L16p/L10e
42334420Ribosomal protein S14p/S29e
610556638FKBP-type peptidyl-prolyl cis-trans isomerase
33223215Glutathione peroxidase
634417
1120101114773Flavodoxin
2211219Calreticulin family
69455534Aminotransferase class-V
1211229Ribonucleotide reductase, small chain
558547495748341DEAD/DEAH box helicase
8412878788473525Helicase conserved C-terminal domain
1211139EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
54335424Ribosomal protein L23
211228Pyridoxal-dependent decarboxylase, C-terminal sheet domain
75447431Ribosomal protein L5
45334322Pyridoxal-dependent decarboxylase conserved domain
2211129Citrate synthase, C-terminal domain
612666642GHMP kinases N terminal domain
916899657Biotin carboxylase, N-terminal domain
2211219Tryptophan synthase alpha chain
12159910964Pyridoxal-phosphate dependent enzyme
55'Paired box' domain
263920212324153NUDIX domain
510666437pfkB family carbohydrate kinase
187551853Glycosyl hydrolases family 28
55335425Ribosomal protein L3
77447534Ribosomal protein L11, RNA binding domain
1216101071166Histidine phosphatase superfamily (branch 1)
2211118Thymidylate synthase
7366111043ATP synthase alpha/beta chain, C terminal domain
17219991479Calponin homology (CH) domain
2114Bacterial dnaA protein
59668337Glutamine amidotransferases class-II
46335324Ribosomal protein S15
12115'Cold-shock' DNA-binding domain
68446331Thaumatin family
22112210Fructose-1-6-bisphosphatase, N-terminal domain
36333220Ribonucleotide reductase, all-alpha domain
54326222Ribosomal protein S2
10149991263SRF-type transcription factor (DNA-binding and dimerisation domain)
466837403947277GATA zinc finger
8341818246108Amino acid permease
912667747Prolyl oligopeptidase family
78447535Ribosomal protein L30p/L7e
57555532Histidine phosphatase superfamily (branch 2)
1211117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
69556435Aconitase family (aconitate hydratase)
32222213Glycosyl hydrolases family 17
63336425Ribosomal protein S5, N-terminal domain
69555131Nucleoside diphosphate kinase
72441422Tetraspanin family
66336428Ribosomal protein S10p/S20e
293216161727137Arrestin (or S-antigen), N-terminal domain
1211117Phosphoglucose isomerase
23222112Carbohydrate phosphorylase
44233218SecY translocase
2211219Respiratory-chain NADH dehydrogenase, 49 Kd subunit
46334424Ribosomal protein L6
59555534Polyprenyl synthetase
111688111064Hexokinase
913778953Dynamin family
2211219Biopterin-dependent aromatic amino acid hydroxylase
2111229Transcription factor TFIID (or TATA-binding protein, TBP)
55344425Rieske [2Fe-2S] domain
11Proton-conducting membrane transporter
1219111112974Biotin-requiring enzyme
24222214Phosphofructokinase
31223314Ribosomal protein S17
23222213Hydroxymethylglutaryl-coenzyme A reductase
712667846FGGY family of carbohydrate kinases, N-terminal domain
1211117Sodium:dicarboxylate symporter family
12231212131385Enoyl-CoA hydratase/isomerase
78446433Ribosomal protein S9/S16
34223216Transcription factor TFIIB repeat
710665539Cytidine and deoxycytidylate deaminase zinc-binding region
211217Molybdopterin oxidoreductase
10737121723916428Chromo (CHRromatin Organisation MOdifier) domain
48556432D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
58555432Malic enzyme, N-terminal domain
342231156-phosphogluconate dehydrogenase, C-terminal domain
57545430Multicopper oxidase
172513121716100WW domain
36333321Ribosomal RNA adenine dimethylase
1782881581611731641,122WD domain, G-beta repeat
55333423Heavy-metal-associated domain
610555536Adenylate kinase
54223218Phosphoglucomutase/phosphomannomutase, C-terminal domain
56335325Ribosomal protein S8
46333322Ribosomal protein S11
14241412111691LIM domain
98446637Regulator of chromosome condensation (RCC1) repeat
44445425Ribosomal protein S13/S18
121116Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
23222213chorismate binding enzyme
1013771195760s Acidic ribosomal protein
38444427Prenyltransferase and squalene oxidase repeat
1217101014770Protein kinase C terminal domain
2211219Single-strand binding protein family
22112210S-adenosylmethionine synthetase, N-terminal domain
212716161821119Bromodomain
182516172017113Acyl-CoA dehydrogenase, C-terminal domain
234322212520154Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
24122213Ribonuclease T2 family
232514151822117HSF-type DNA-binding
24222214SRP54-type protein, GTPase domain
1211117Urease alpha-subunit, N-terminal domain
87447535Serine carboxypeptidase
10211112121076Phosphatidylinositol 3- and 4-kinase
23222213Transketolase, thiamine diphosphate binding domain
1211117WHEP-TRS domain
24222214Inositol monophosphatase family
713666543Glutaredoxin
14222112Isocitrate lyase family
24222214Serine hydroxymethyltransferase
2211219Iron-containing alcohol dehydrogenase
55335324Ribosomal protein L10
1476623763KOW motif
1211117Ribosomal protein L34
1211117Ribosomal protein L33
35333320RF-1 domain
1211117Sodium:solute symporter family
1211117Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
22112210IMP dehydrogenase / GMP reductase domain
44224319Glucose-6-phosphate dehydrogenase, NAD binding domain
15181010171585Protein phosphatase 2C
811566642Nucleotidyl transferase
1111116Carbonic anhydrase
54223319Phosphoribulokinase / Uridine kinase family
101477101058Fatty acid desaturase
610665538MutS domain V
1211117Delta-aminolevulinic acid dehydratase
34223216Arginase family
79667540MCM P-loop domain
56334425Squalene/phytoene synthase
223217172017125FHA domain
355732303934227AMP-binding enzyme
10148811758G-protein alpha subunit
303720202927163HMG (high mobility group) box
13138712962His Kinase A (phospho-acceptor) domain
618989757Armadillo/beta-catenin-like repeat
227037344315221Tetratricopeptide repeat
49444429Ion transport protein
1211117DNA gyrase/topoisomerase IV, subunit A
81511118861BRCA1 C Terminus (BRCT) domain
912779650Glycosyl transferases group 1
27335222Glycosyl transferase family 2
10108712855SAM domain (Sterile alpha motif)
31113312linker histone H1 and H5 family
1211218Ribosomal protein L7/L12 C-terminal domain
1211117Urease, gamma subunit
55335324CoA-ligase
1084410945Phosphopantetheine attachment site
24222214Formyl transferase
172615161713104Metallopeptidase family M24
15472425348153Leucine Rich Repeat
628171716690alpha/beta hydrolase fold
45335424RNA polymerase Rpb2, domain 6
9179991063PB1 domain
24222214Staphylococcal nuclease homologue
324123222631175Rab-GTPase-TBC domain
1211117Tudor domain
33211212WH1 domain
67546836Zinc finger, ZZ type
1211117HRDC domain
203116162216121CBS domain
78445432Ribosomal protein L13
55335324Ribosomal protein L4/L1 family
1111116Clp protease
56444326S1 RNA binding domain
1111116HIUase/Transthyretin family
710558641AhpC/TSA family
37434425tRNA synthetases class I (W and Y)
1111116UvrD/REP helicase N-terminal domain
16138671363Rhodanese-like domain
131991061067Universal stress protein family
274728272925183Acetyltransferase (GNAT) family
22112210SecE/Sec61-gamma subunits of protein translocation complex
1211117C-terminal regulatory domain of Threonine dehydratase
24222214AIR synthase related protein, N-terminal domain
923121213877tRNA synthetase class II core domain (G, H, P, S and T)
45333422SpoU rRNA Methylase family
51015Phage integrase family
23223315Tetrapyrrole (Corrin/Porphyrin) Methylases
1211117Glycosyl transferase family, a/b domain
1157PDZ domain
32222213Class II Aldolase and Adducin N-terminal domain
224Diacylglycerol kinase accessory domain
11116751151Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
121681091368Fes/CIP4, and EFC/F-BAR homology domain
101891013868IQ calmodulin-binding motif
36333321Phosphoinositide 3-kinase family, accessory domain (PIK domain)
811879649Phospholipase D Active site motif
22136681671Regulator of G protein signaling domain
141599131474GTPase-activator protein for Ras-like GTPase
313319192729158RasGEF domain
18231312171699RasGEF N-terminal motif
365031323635220RhoGAP domain
364728283036205RhoGEF domain
1520111115981SPRY domain
36335525RNA polymerase Rpb1, domain 2
121116Guanylate kinase
69556738Gelsolin repeat
142915182013109UBA/TS-N domain
295628312823195PHD-finger
56445327GGL domain
12171111121174HECT-domain (ubiquitin-transferase)
15325117Helix-hairpin-helix motif
2211219BRCA2 repeat
33112212MSP (Major sperm protein) domain
23333216Ribonuclease III domain
64222622Region in Clathrin and VPS
24222214RanBP1 domain
22221211PPIC-type PPIASE domain
45334322Zn-finger in Ran binding protein and others
163423242413134Zinc finger C-x8-C-x5-C-x3-H type (and similar)
211116B-box zinc finger
121116Poly(ADP-ribose) polymerase catalytic domain
22112210Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
71105670478298F-box domain
1211218Elongation factor 1 gamma, conserved domain
1211117Calpain family cysteine protease
78662635Copper fist DNA binding domain
914998958CRAL/TRIO domain
19201210161491BTB/POZ domain
2220111011983Ricin-type beta-trefoil lectin domain
12115Inhibitor of Apoptosis domain
25222215Voltage gated chloride channel
78447434Caspase domain
12117621351GDSL-like Lipase/Acylhydrolase
78556839Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
13171110151278ABC transporter transmembrane region
30277307Integrase core domain
1112779652FAD binding domain
1311118Condensation domain
2111218S-adenosyl-L-homocysteine hydrolase, NAD binding domain
45444122HAMP domain
75447431ribosomal L5P family C-terminus
1013889856Insulinase (Peptidase family M16)
68447534Dehydrogenase E1 component
2211118Lumazine binding domain
10107810752Elongation factor G C-terminus
78446332HMGL-like
1210559445DnaJ central domain
55333524Ribosomal protein L1p/L10e family
15171212121280Cation transporting ATPase, C-terminus
193116162219123Cation transporter/ATPase, N-terminus
1211117dUTPase
69556435Aconitase C-terminal domain
79557639Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
33222214Acyl transferase domain
1211117Urease beta subunit
3422213Dihydrodipicolinate synthetase family
316436374519232haloacid dehalogenase-like hydrolase
14211111151284Glycosyl hydrolases family 18
2211219Proliferating cell nuclear antigen, N-terminal domain
121116Translation initiation factor IF-3, C-terminal domain
1211117Adenylosuccinate synthetase
1111228Asparaginase, N-terminal
36341320Peptidase S24-like
48444428Inorganic pyrophosphatase
1113767650Glycosyl hydrolases family 16
86336329Glycosyl hydrolases family 15
111471013459NADH:flavin oxidoreductase / NADH oxidase family
142222133-hydroxyacyl-CoA dehydrogenase, C-terminal domain
47444326Glycosyl hydrolase family 20, catalytic domain
46444426HhH-GPD superfamily base excision DNA repair protein
121116AIR carboxylase
37333625GMC oxidoreductase
36333220Asparagine synthase
35233117Fungal cellulose binding domain
252814142521127Septin
44224420EF-1 guanine nucleotide exchange domain
121127Homoserine dehydrogenase
511512Flavin-binding monooxygenase-like
46334323tRNA synthetases class I (E and Q), catalytic domain
36333321tRNA synthetases class I (R)
68434631XPG N-terminal domain
924111291075Metallo-beta-lactamase superfamily
1211117F5/8 type C domain
1011666645Choline/Carnitine o-acyltransferase
111115Putative esterase
46335324Glycosyl hydrolase family 9
1211117Ferrochelatase
56445529Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
2211219Arginosuccinate synthase
2211219Electron transfer flavoprotein FAD-binding domain
11168811963RNB domain
101510991164CNH domain
57444428Diacylglycerol kinase catalytic domain
12158981668Dual specificity phosphatase, catalytic domain
23223315MyTH4 domain
55
17191011161386P21-Rho-binding domain
284626252429178PX domain
11127810957Ras association (RalGDS/AF-6) domain
613668847UBX domain
712666542VHS domain
121116Phosphoinositide 3-kinase C2
66336529DAHP synthetase I family
48543327Carbon-nitrogen hydrolase
1211117Prephenate dehydratase
614875646Syntaxin
1118101113568Pumilio-family RNA binding repeat
913667647Histone-like transcription factor (CBF/NF-Y) and archaeal histone
24222113Pterin binding enzyme
2111229ER lumen protein retaining receptor
23222213tRNA N6-adenosine threonylcarbamoyltransferase
2211118Histidinol dehydrogenase
25332318impB/mucB/samB family
533516
55334424Ribosomal L15
114426835Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
2211219Ribosomal prokaryotic L21 protein
2211219Ribosomal L28 family
44224319Ribosomal L29 protein
42334319Ribosomal L39 protein
33224216Ribosomal S17
1211117Ribulose-phosphate 3 epimerase family
2211219Translationally controlled tumour protein
37333423RNA pseudouridylate synthase
711667643Histone deacetylase domain
1211117Glycosyltransferase family 10 (fucosyltransferase) C-term
38444326POT family
47333323PWWP domain
253826232219153SET domain
54445325Isochorismatase family
713667544Permease family
42224216Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
69345633XPG I-region
112DNA photolyase
11Zinc dependent phospholipase C
26333320Cytosol aminopeptidase family, catalytic domain
1311129Sulfatase
22112196,7-dimethyl-8-ribityllumazine synthase
2211219Ribosomal protein S16
38422322Acyl CoA binding protein
712667644Cullin family
1211117Elongation factor TS
67345631FAD binding domain
911766847EamA-like transporter family
422210
1016887756ThiF family
22223314Ribosomal family S4e
25333420Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
58335226Ammonium Transporter Family
11148810758Sulfate permease family
46433424MATH domain
1111116Uncharacterized protein family UPF0004
24222113Dehydratase family
2211219Transaldolase/Fructose-6-phosphate aldolase
44224319Mechanosensitive ion channel
22112210GTP cyclohydrolase II
3111173,4-dihydroxy-2-butanone 4-phosphate synthase
46334323Adaptor complexes medium subunit family
811778849Exonuclease
36333321Dipeptidyl peptidase IV (DPP IV) N-terminal region
610556335Glycosyl hydrolase family 3 N terminal domain
33223215Ribosomal protein L44
64226424Sodium:sulfate symporter transmembrane region
1211117DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
54335424Nucleosome assembly protein (NAP)
57446531Synaptobrevin
1211117GMP synthase C terminal domain
11LAGLIDADG endonuclease
45333220Adenosine/AMP deaminase
112Barwin family
611666540Oxidoreductase FAD-binding domain
23222112Histidine biosynthesis protein
10137710653Glycosyltransferase family 20
2211219UDP-glucose/GDP-mannose dehydrogenase family, central domain
34223216Carbamoyl-phosphate synthase small chain, CPSase domain
5424116PAS fold
36332320Probable molybdopterin binding domain
59656536Sec1 family
27333321GDP dissociation inhibitor
813777749Sodium/hydrogen exchanger family
32223214RNA polymerase Rpb3/RpoA insert domain
56445529Initiation factor 2 subunit family
112PQQ enzyme repeat
44224319Electron transfer flavoprotein domain
1211117Uricase
55335324Ribosomal S3Ae family
2211219Ribosomal L27 protein
1211319GTP1/OBG
35333320Gamma-glutamyltranspeptidase
1427Ribosomal L40e family
1