PFAM Domains • Ochromonadaceae sp. CCMP2298 v1.0
Annotations/GenomesAuran1Aurli1Ochro2298_1Pavlov2436_1Pelago2097_1Phatr2Physo3Thaps3TotalAnnotation Description
PFAMs
7,9719,33411,40811,73212,8505,54412,4196,30477,562
1237 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
302242407 transmembrane sweet-taste receptor of 3 GCPR
6648685068475756460ATPase family associated with various cellular activities (AAA)
116836766804916950680ABC transporter
46106435442ATP synthase alpha/beta family, nucleotide-binding domain
55125624EGF-like domain
1916232022211922162Elongation factor Tu GTP binding domain
6356525Helix-loop-helix DNA-binding domain
274518Hsp20/alpha crystallin family
8924231562611122Hsp70 protein
131217141381013100KH domain
459SH2 domain
16261142353SH3 domain
314TNFR/NGFR cysteine-rich region
11u-PAR/Ly-6 domain
141716101179488Actin
1851765125526227274897Ankyrin repeat
239111962PAN domain
914152211413896ADP-ribosylation factor family
64453613647Eukaryotic aspartyl protease
865427264799622367Cyclic nucleotide-binding domain
22Cadherin domain
2215Cystatin domain
123Cytochrome b/b6/petB
5121131317Cytochrome c
1116213217Double-stranded RNA binding motif
2211529244512766626EF hand
13115114Fe-4S binding domain
11Fibronectin type II domain
1111838122872Fibronectin type III domain
1111316115Globin
10161278725287Glutathione S-transferase, C-terminal domain
24433611538Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
327535Homeodomain
22Immunoglobulin domain
3220328Kazal-type serine protease inhibitor domain
4115323Kringle domain
11114Laminin B (Domain IV)
43310Laminin EGF domain
1222112213lactate/malate dehydrogenase, NAD binding domain
11Low-density lipoprotein receptor repeat class B
5365524Lectin C-type domain
22Ligand-gated ion channel
112Lipocalin / cytosolic fatty-acid binding protein family
314732391742411205Myosin head (motor domain)
243110LNR domain
52415756387107Cytochrome P450
2613012302322041134001411,882Protein kinase domain
1920141018172220140Pyridine nucleotide-disulphide oxidoreductase
3441512731123524255Ras family
8159333451256217Response regulator receiver domain
219113RNase H
67517360112536659541RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
33Retroviral aspartyl protease
1135Reverse transcriptase (RNA-dependent DNA polymerase)
11Serpin (serine protease inhibitor)
342122216Copper/zinc superoxide dismutase (SODC)
2223222419Iron/manganese superoxide dismutases, alpha-hairpin domain
1412111519138799Subtilase family
2214212020166815196Sugar (and other) transporter
11Sushi repeat (SCR repeat)
3318343945212528243Thioredoxin
1113Trefoil (P-type) domain
82711284326116Trypsin
1618Thrombospondin type 1 domain
15910128514881Tubulin/FtsZ family, GTPase domain
12125433von Willebrand factor type A domain
122335928587172Zinc finger, C2H2 type
518263104310242339Zinc finger, C3HC4 type (RING finger)
861681586810139Zinc knuckle
234110Protein-tyrosine phosphatase
5074435059456339423short chain dehydrogenase
203271015145017165Zinc-binding dehydrogenase
4844345436Thiolase, N-terminal domain
486741724492Beta-ketoacyl synthase, N-terminal domain
84241619657892Fe-2S iron-sulfur cluster binding domain
291313151482011123Papain family cysteine protease
4243417227Enolase, C-terminal TIM barrel domain
8778968861Glutamine amidotransferase class-I
13111817111091099TCP-1/cpn60 chaperonin family
22ATP synthase A chain
5622322325Glutamine synthetase, catalytic domain
6284432534Triosephosphate isomerase
191420162173417148E1-E2 ATPase
471529214121425167Core histone H2A/H2B/H3/H4
3115Alpha amylase, catalytic domain
122128Phorbol esters/diacylglycerol binding domain (C1 domain)
9109810612872Bacterial transferase hexapeptide (six repeats)
74611685855tRNA synthetases class I (I, L, M and V)
1212101913241250152Cyclin, N-terminal domain
412211121Carboxylesterase family
374445330DNA polymerase family B
24352103635ATP synthase subunit C
5112312Legume lectin domain
213Sigma-70 factor, region 1.2
251168561457Peroxidase
5115241129Beta-lactamase
32214113C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
11Fibrinogen beta and gamma chains, C-terminal globular domain
3841332334246227282Calcineurin-like phosphoesterase
233352339Cellulase (glycosyl hydrolase family 5)
5685666648tRNA synthetases class II (D, K and N)
5652586165574853450Mitochondrial carrier protein
1922221720112318152Aminotransferase class I and II
810396810660Phosphoribosyl transferase domain
33Sigma-54 interaction domain
4317293742201924231Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
2284332529Phosphoglycerate kinase
121222212Ribosomal protein S4/S9 N-terminal domain
1111311110Ribosomal protein S12/S23
4133541425Chaperonin 10 Kd subunit
3439241546185711244C2 domain
30453211261010811273PH domain
456884843bZIP transcription factor
1817179116238109Aldehyde dehydrogenase family
881421Fungal Zn(2)-Cys(6) binuclear cluster domain
2629142223141321162Cytochrome b5-like Heme/Steroid binding domain
4314113219Oxidoreductase molybdopterin binding domain
17167916121812107Oxidoreductase NAD-binding domain
2925273439182723222SNF2 family N-terminal domain
1123111111Ribosomal protein S7p/S5e
2325291924182119178Ubiquitin-conjugating enzyme
1332213217Isocitrate/isopropylmalate dehydrogenase
1122112111Ribosomal Proteins L2, RNA binding domain
2810Chitinase class I
5366422432Hsp90 protein
2221222215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2111229Dihydrofolate reductase
224Chitin recognition protein
1421053Cysteine-rich secretory protein family
111211119Ribosomal protein S3, C-terminal domain
112Cupin
3121111221Annexin
141311828Eukaryotic-type carbonic anhydrase
1416Chalcone and stilbene synthases, N-terminal domain
21115Bacterial regulatory proteins, luxR family
44735465382-oxoacid dehydrogenases acyltransferase (catalytic domain)
21159Catalase
13116Disintegrin
251210UDP-glucoronosyl and UDP-glucosyl transferase
10698876559Aminotransferase class-III
1131211111Ribosomal protein S19
2346222425DNA gyrase B
51111110Thiamine pyrophosphate enzyme, central domain
5422233223Lyase
1531234322Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
123129Sodium:neurotransmitter symporter family
11Ferritin-like domain
813631341360Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
2114Bacterial DNA-binding protein
1341212115ATP:guanido phosphotransferase, C-terminal catalytic domain
2142241319Indole-3-glycerol phosphate synthase
1124Aromatic amino acid lyase
33Photosystem I psaA/psaB protein
63626515649Pyruvate kinase, barrel domain
6264827060175924438Kinesin motor domain
104565276102524559546DnaJ domain
2115281625171521158Proteasome subunit
410236435266Major intrinsic protein
2173221220ATP synthase
1151119129Glycosyl hydrolase family 1
1011536111311703'5'-cyclic nucleotide phosphodiesterase
1113Profilin
1222222215Ribosomal protein L22p/L17e
1121112110Ribosomal protein L14p/L23e
22Resolvase, N terminal domain
25152127287254152Ubiquitin family
544513123Cofilin/tropomyosin-type actin-binding protein
241231111514-3-3 protein
2226Alkaline phosphatase
6121167110255Zinc carboxypeptidase
4812202831183326216Aldo/keto reductase family
4760251919286529292Myb-like DNA-binding domain
3126Glycosyl hydrolases family 32 N-terminal domain
2114Ribosomal protein L16p/L10e
111216Ribosomal protein S14p/S29e
5316283040241225228FKBP-type peptidyl-prolyl cis-trans isomerase
5385537440Glutathione peroxidase
3222211
510544620660Flavodoxin
11
2232312116Calreticulin family
2461022Common central domain of tyrosinase
1214Thymidine kinase
698813313464Aminotransferase class-V
3323225323Ribonucleotide reductase, small chain
7347657591595064524DEAD/DEAH box helicase
110839093135788886763Helicase conserved C-terminal domain
31341113Fructose-bisphosphate aldolase class-I
112111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
122222112Ribosomal protein L23
3342435226Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1113Potato inhibitor I family
21111118Ribosomal protein L5
2321225219Pyridoxal-dependent decarboxylase conserved domain
2161411117Citrate synthase, C-terminal domain
7875736649GHMP kinases N terminal domain
9885866959Biotin carboxylase, N-terminal domain
11211118Tryptophan synthase alpha chain
151117111481511102Pyridoxal-phosphate dependent enzyme
1618182319201522151NUDIX domain
79109836557pfkB family carbohydrate kinase
421022644Glycosyl hydrolases family 28
2232222217Ribosomal protein L3
3213221216Ribosomal protein L11, RNA binding domain
3223223445131722208Histidine phosphatase superfamily (branch 1)
13213212Rubredoxin
1212221112Thymidylate synthase
113510Lipoxygenase
4494434436ATP synthase alpha/beta chain, C terminal domain
10937916247Calponin homology (CH) domain
11Bacterial dnaA protein
46453641042Glutamine amidotransferases class-II
11312210Phosphoenolpyruvate carboxylase
4353332326Ribosomal protein S15
92461451546'Cold-shock' DNA-binding domain
11213Thaumatin family
3265362431Fructose-1-6-bisphosphatase, N-terminal domain
5222221218Ribonucleotide reductase, all-alpha domain
2123111112Ribosomal protein S2
112SRF-type transcription factor (DNA-binding and dimerisation domain)
11GATA zinc finger
21012228449Amino acid permease
5668534643Prolyl oligopeptidase family
1111121210Ribosomal protein L30p/L7e
2654941242Histidine phosphatase superfamily (branch 2)
112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
2253223221Aconitase family (aconitate hydratase)
51511Glycosyl hydrolase family 10
11819Glycosyl hydrolases family 17
2223222217Ribosomal protein S5, N-terminal domain
5238335433Nucleoside diphosphate kinase
51713Tetraspanin family
1113Galactoside-binding lectin
1114211112Ribosomal protein S10p/S20e
133916Arrestin (or S-antigen), N-terminal domain
3111331417Phosphoglucose isomerase
111111129SecY translocase
11Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2122111111Ribosomal protein L6
7456653541Polyprenyl synthetase
11Hexokinase
10311131126258Dynamin family
12115Biopterin-dependent aromatic amino acid hydroxylase
1312113113Transcription factor TFIID (or TATA-binding protein, TBP)
111315RTX calcium-binding nonapeptide repeat (4 copies)
1461210873666Rieske [2Fe-2S] domain
112Phytochrome region
11Proton-conducting membrane transporter
1312157169131398Biotin-requiring enzyme
4132321218Phosphofructokinase
2222223217Ribosomal protein S17
124111111Hydroxymethylglutaryl-coenzyme A reductase
4522354429FGGY family of carbohydrate kinases, N-terminal domain
11226FERM central domain
22913Sodium:dicarboxylate symporter family
17261098681296Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
112211210Transcription factor TFIIB repeat
5857785853Cytidine and deoxycytidylate deaminase zinc-binding region
134Molybdopterin oxidoreductase
4150530292Chromo (CHRromatin Organisation MOdifier) domain
11C1q domain
232112314Phosphatidylinositol-specific phospholipase C, Y domain
432212317Phosphatidylinositol-specific phospholipase C, X domain
22436313235D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
422314117Malic enzyme, N-terminal domain
21915220PEP-utilising enzyme, mobile domain
111121296-phosphogluconate dehydrogenase, C-terminal domain
718Multicopper oxidase
11Granulin
4565252464156022320WW domain
3122321216Ribosomal RNA adenine dimethylase
172193175143234881721011,278WD domain, G-beta repeat
5433529132Heavy-metal-associated domain
88916577868Adenylate kinase
312232215Phosphoglucomutase/phosphomannomutase, C-terminal domain
111111118Ribosomal protein S8
111211119Ribosomal protein S11
3103232124LIM domain
1113Matrixin
243416173063016173Regulator of chromosome condensation (RCC1) repeat
111211119Ribosomal protein S13/S18
2224312319chorismate binding enzyme
445324553260s Acidic ribosomal protein
112CUB domain
4444343430Prenyltransferase and squalene oxidase repeat
762121129Protein kinase C terminal domain
1113Single-strand binding protein family
112Type II/IV secretion system protein
512121214S-adenosylmethionine synthetase, N-terminal domain
1321281620162416154Bromodomain
11201037610572Acyl-CoA dehydrogenase, C-terminal domain
2131311518182616176Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
22215113Ribonuclease T2 family
12310912502260178HSF-type DNA-binding
4221442423SRP54-type protein, GTPase domain
21111118Urease alpha-subunit, N-terminal domain
1261237618468Serine carboxypeptidase
111111118Ribosomal protein L20
171610915112311112Phosphatidylinositol 3- and 4-kinase
1133121214Transketolase, thiamine diphosphate binding domain
123322215WHEP-TRS domain
6454952944Inositol monophosphatase family
38101013512768Glutaredoxin
1232113114Isocitrate lyase family
3244323324Serine hydroxymethyltransferase
122117Iron-containing alcohol dehydrogenase
4245432327Ribosomal protein L10
6435454637KOW motif
1211117Ribosomal protein L34
111111118Ribosomal protein L33
3275653435RF-1 domain
219645229Sodium:solute symporter family
11212119Imidazoleglycerol-phosphate dehydratase
11433214DNA polymerase family A
2342113117IMP dehydrogenase / GMP reductase domain
2311119Glucose-6-phosphate dehydrogenase, NAD binding domain
11211511ROK family
3138243330202119216Protein phosphatase 2C
22Type II secretion system (T2SS), protein F
33332317Nucleotidyl transferase
131072326Carbonic anhydrase
114233216Phosphoribulokinase / Uridine kinase family
44Transcriptional regulatory protein, C terminal
10820161713817109Fatty acid desaturase
5787726749MutS domain V
12111118Delta-aminolevulinic acid dehydratase
1322121113Arginase family
11889858865MCM P-loop domain
323432219Squalene/phytoene synthase
112Bacterial extracellular solute-binding proteins, family 5 Middle
22Bacterial extracellular solute-binding proteins, family 3
7171122196206108FHA domain
3437151530123316192AMP-binding enzyme
4132311226G-protein alpha subunit
614635643939284Chlorophyll A-B binding protein
128720931820115HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
3855333531111His Kinase A (phospho-acceptor) domain
43243156894611228Armadillo/beta-catenin-like repeat
9490312135608356470Tetratricopeptide repeat
33Papillomavirus helicase
5939162130107916270Ion transport protein
2453222424DNA gyrase/topoisomerase IV, subunit A
4217Scavenger receptor cysteine-rich domain
8645411644BRCA1 C Terminus (BRCT) domain
1091471848676Glycosyl transferases group 1
15436963753Glycosyl transferase family 2
516858110154SAM domain (Sterile alpha motif)
133222316linker histone H1 and H5 family
6122231219Ribosomal protein L7/L12 C-terminal domain
111315Pectate lyase
21111118Urease, gamma subunit
4332323222CoA-ligase
117931335354Phosphopantetheine attachment site
5231542325Formyl transferase
981099511768Metallopeptidase family M24
901512018205711973548Leucine Rich Repeat
1130312144911121alpha/beta hydrolase fold
5346323329RNA polymerase Rpb2, domain 6
22EAL domain
113511820PB1 domain
2114233218Staphylococcal nuclease homologue
520121417221394Rab-GTPase-TBC domain
11121118Tudor domain
11WH1 domain
26556414446Zinc finger, ZZ type
2331413118HRDC domain
121511921131713111CBS domain
2224222218Ribosomal protein L13
3223322219Ribosomal protein L4/L1 family
6187661641Clp protease
1141071274863S1 RNA binding domain
111111118HIUase/Transthyretin family
341147712351AhpC/TSA family
5464444435tRNA synthetases class I (W and Y)
2157116UvrD/REP helicase N-terminal domain
659121449463Rhodanese-like domain
134Universal stress protein family
2428242831283226221Acetyltransferase (GNAT) family
11131119SecE/Sec61-gamma subunits of protein translocation complex
2121112111C-terminal regulatory domain of Threonine dehydratase
2132323319AIR synthase related protein, N-terminal domain
121087910111077tRNA synthetase class II core domain (G, H, P, S and T)
86981455964SpoU rRNA Methylase family
66Phage integrase family
4433222323Tetrapyrrole (Corrin/Porphyrin) Methylases
1311131112Glycosyl transferase family, a/b domain
11TonB dependent receptor
1913386231834124PDZ domain
3121111313Class II Aldolase and Adducin N-terminal domain
112
12111129Diacylglycerol kinase accessory domain
41327118Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
123Fes/CIP4, and EFC/F-BAR homology domain
50107211591610926353IQ calmodulin-binding motif
132144116Phosphoinositide 3-kinase family, accessory domain (PIK domain)
431220333Phospholipase D Active site motif
221114157262Regulator of G protein signaling domain
235GTPase-activator protein for Ras-like GTPase
2125RasGEF domain
11RasGEF N-terminal motif
21242617135RhoGAP domain
320217235RhoGEF domain
499310314355SPRY domain
3623323325RNA polymerase Rpb1, domain 2
1232121315Guanylate kinase
3535344330Gelsolin repeat
111411101010221098UBA/TS-N domain
1419151611153820148PHD-finger
2215MAM domain, meprin/A5/mu
3231043126Filamin/ABP280 repeat
11GGL domain
1420188166296117HECT-domain (ubiquitin-transferase)
3231114217Helix-hairpin-helix motif
1113BRCA2 repeat
1112213314MSP (Major sperm protein) domain
1348Ribonuclease III domain
111522113Region in Clathrin and VPS
1311313215RanBP1 domain
4223664633PPIC-type PPIASE domain
28229211440Zn-finger in Ran binding protein and others
161481717152818133Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1247B-box zinc finger
7116529Poly(ADP-ribose) polymerase catalytic domain
333181129Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
151437218181491F-box domain
2111128Elongation factor 1 gamma, conserved domain
491091516155Calpain family cysteine protease
112916232514109137CRAL/TRIO domain
4106108713664BTB/POZ domain
3229117Ricin-type beta-trefoil lectin domain
54113779248Voltage gated chloride channel
13312616Caspase domain
1162515241GDSL-like Lipase/Acylhydrolase
21111118Poly-adenylate binding protein, unique domain
121116POLO box duplicated region
2522141423145217181ABC transporter transmembrane region
12715346Integrase core domain
1532336427FAD binding domain
11313110Condensation domain
1121111210S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11HAMP domain
21111118ribosomal L5P family C-terminus
11791012971277Insulinase (Peptidase family M16)
4443485638Dehydrogenase E1 component
1111116Lumazine binding domain
671098106965Elongation factor G C-terminus
6451553534HMGL-like
5212244323DnaJ central domain
19171691841093Sulfotransferase domain
2226Starch binding domain
214422217Ribosomal protein L1p/L10e family
84516412848Cation transporting ATPase, C-terminus
1251379513670Cation transporter/ATPase, N-terminus
31610OmpA family
1212112111dUTPase
11Thymidine kinase from herpesvirus
11111319Aconitase C-terminal domain
8685647852Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
4371413124Acyl transferase domain
211111119Urease beta subunit
511