PFAM Domains • Torpedospora radiata JK5252C v1.0
Annotations/GenomesFusox1Melti1Mictr1Sodal1Torra1Trire2Valla1TotalAnnotation Description
PFAMs
11,7375,8059,2966,7657,0026,5076,55253,664
1127 transmembrane receptor (rhodopsin family)
1127 transmembrane receptor (Secretin family)
50385041504433306ATPase family associated with various cellular activities (AAA)
75444432364636313ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
1414141414141498Elongation factor Tu GTP binding domain
61813101199121Helix-loop-helix DNA-binding domain
1412223125Hsp20/alpha crystallin family
977777751Hsp70 protein
888998959KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
19202225222421153SH3 domain
1110910971066Actin
1432713432836323505Ankyrin repeat
17122123PAN domain
878777751ADP-ribosylation factor family
191011915161090Eukaryotic aspartyl protease
754454433Cyclic nucleotide-binding domain
11111117Cytochrome c
211239Double-stranded RNA binding motif
16161516162017116EF hand
211111184Fe-4S binding domain
222231214Fibronectin type III domain
42222214Globin
213158610770Glutathione S-transferase, C-terminal domain
11221119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1276665648Homeodomain
1324432230lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
544444429Myosin head (motor domain)
150248749476937463Cytochrome P450
14395117101144106116822Protein kinase domain
3011161112149103Pyridine nucleotide-disulphide oxidoreductase
25222521232324163Ras family
2311111212131395Response regulator receiver domain
613112115RNase H
59606060615958417RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
44Reverse transcriptase (RNA-dependent DNA polymerase)
312142215Copper/zinc superoxide dismutase (SODC)
212322214Iron/manganese superoxide dismutases, alpha-hairpin domain
25523918157102Subtilase family
1931513828277644521Sugar (and other) transporter
177131010111381Thioredoxin
2111117Trypsin
544446431Tubulin/FtsZ family, GTPase domain
1144162331von Willebrand factor type A domain
74426647586744398Zinc finger, C2H2 type
43333741343236256Zinc finger, C3HC4 type (RING finger)
975455338Zinc knuckle
222222214Protein-tyrosine phosphatase
22233146775711858711short chain dehydrogenase
129157134295335366Zinc-binding dehydrogenase
925566639Thiolase, N-terminal domain
17612169171087Beta-ketoacyl synthase, N-terminal domain
6445555342Fe-2S iron-sulfur cluster binding domain
11111128Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
1089887959Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
543332323Glutamine synthetase, catalytic domain
122212212Triosephosphate isomerase
31132219141611126E1-E2 ATPase
888887956Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
11210424336Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
1187868957Bacterial transferase hexapeptide (six repeats)
333436325tRNA synthetases class I (I, L, M and V)
1075667748Cyclin, N-terminal domain
48426216128116Carboxylesterase family
444444428DNA polymerase family B
545654433ATP synthase subunit C
1053566237Peroxidase
1961078252Beta-lactamase
233321115C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
34232924232728188Calcineurin-like phosphoesterase
12124104244Cellulase (glycosyl hydrolase family 5)
977778752tRNA synthetases class II (D, K and N)
43353835363539261Mitochondrial carrier protein
11recA bacterial DNA recombination protein
28111716121615115Aminotransferase class I and II
888778955Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11114Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
2312111112141295C2 domain
16141915181919120PH domain
2761210911984bZIP transcription factor
5573212102014150Aldehyde dehydrogenase family
282822981001091921331,196Fungal Zn(2)-Cys(6) binuclear cluster domain
27152521192117145Cytochrome b5-like Heme/Steroid binding domain
63224219Oxidoreductase molybdopterin binding domain
3291910131411108Oxidoreductase NAD-binding domain
27222623242521168SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
20181920232019139Ubiquitin-conjugating enzyme
10611557549Isocitrate/isopropylmalate dehydrogenase
122222112Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
824352125Chitin recognition protein
623243222Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
72623121Cupin
322322317Annexin
42312113Eukaryotic-type carbonic anhydrase
12115Chalcone and stilbene synthases, N-terminal domain
4333333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
725337128Catalase
11211118Disintegrin
3137UDP-glucoronosyl and UDP-glucosyl transferase
18515748663Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
1834334338Thiamine pyrophosphate enzyme, central domain
836333329Lyase
222222113Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
622212Sodium:neurotransmitter symporter family
22Ferritin-like domain
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11ATP:guanido phosphotransferase, C-terminal catalytic domain
11111117Indole-3-glycerol phosphate synthase
211116Aromatic amino acid lyase
11211118Pyruvate kinase, barrel domain
111112109111175Kinesin motor domain
28272525262625182DnaJ domain
1414141414141498Proteasome subunit
824217327Major intrinsic protein
11111117ATP synthase
6311213Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
11111117Ribosomal protein L22p/L17e
222212213Ribosomal protein L14p/L23e
13101091181071Ubiquitin family
755553535Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
526443226Alkaline phosphatase
913954233Zinc carboxypeptidase
41153618152717169Aldo/keto reductase family
18141714121413102Myb-like DNA-binding domain
534444428Forkhead domain
1451121Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
222221213Ribosomal protein S14p/S29e
333343322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
212112110
1268557649Flavodoxin
11Protamine P1
12111118Calreticulin family
115144122452Common central domain of tyrosinase
1068783648Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
40393837374937277DEAD/DEAH box helicase
78687067717568497Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
411111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
211112210Ribosomal protein L5
1056366642Pyridoxal-dependent decarboxylase conserved domain
322222215Citrate synthase, C-terminal domain
555565536GHMP kinases N terminal domain
759555642Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
188131011121082Pyridoxal-phosphate dependent enzyme
20161815141514112NUDIX domain
657564639pfkB family carbohydrate kinase
124114123Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
222222214Ribosomal protein L3
212222213Ribosomal protein L11, RNA binding domain
18913101061177Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
22Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
545555534Calponin homology (CH) domain
445644431Glutamine amidotransferases class-II
222222214Ribosomal protein S15
111115Thaumatin family
211212211Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
122222213Ribosomal protein S2
422222216SRF-type transcription factor (DNA-binding and dimerisation domain)
878876650GATA zinc finger
8293117123321205Amino acid permease
525351324Prolyl oligopeptidase family
222222214Ribosomal protein L30p/L7e
1457764750Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
647444433Aconitase family (aconitate hydratase)
51537122Glycosyl hydrolase family 10
422231216Glycosyl hydrolases family 17
122122212Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11111117Ribosomal protein S10p/S20e
344343324Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
122222213Ribosomal protein L6
334343323Polyprenyl synthetase
434434426Hexokinase
8710889555Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
1138544338Rieske [2Fe-2S] domain
112Phytochrome region
22Proton-conducting membrane transporter
10710776754Biotin-requiring enzyme
12111118Phosphofructokinase
222222214Ribosomal protein S17
621111113Hydroxymethylglutaryl-coenzyme A reductase
333433322FGGY family of carbohydrate kinases, N-terminal domain
11114Sodium:dicarboxylate symporter family
22510108121178Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
857686545Cytidine and deoxycytidylate deaminase zinc-binding region
21211119Molybdopterin oxidoreductase
2067651651Chromo (CHRromatin Organisation MOdifier) domain
1244444436Phosphatidylinositol-specific phospholipase C, Y domain
1455546544Phosphatidylinositol-specific phospholipase C, X domain
16514775458D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
122212212Malic enzyme, N-terminal domain
11112PEP-utilising enzyme, mobile domain
3231111126-phosphogluconate dehydrogenase, C-terminal domain
1829468451Multicopper oxidase
112Granulin
9910101010866WW domain
11111117Ribosomal RNA adenine dimethylase
112Yeast PIR protein repeat
123113130108100123103800WD domain, G-beta repeat
845535333Heavy-metal-associated domain
334324322Adenylate kinase
122222213Phosphoglucomutase/phosphomannomutase, C-terminal domain
121122211Ribosomal protein S8
1111116Ribosomal protein S11
544444328LIM domain
11Matrixin
413231115Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322222215chorismate binding enzyme
33333332160s Acidic ribosomal protein
544444429Prenyltransferase and squalene oxidase repeat
656655538Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
978777752Bromodomain
19512988869Acyl-CoA dehydrogenase, C-terminal domain
1414141414151499Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
31329Ribonuclease T2 family
533333323HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
21111118Urease alpha-subunit, N-terminal domain
1355665343Serine carboxypeptidase
688888854Phosphatidylinositol 3- and 4-kinase
415112115Transketolase, thiamine diphosphate binding domain
31964326Glycosyl hydrolases family 11
543334325Inositol monophosphatase family
444453428Glutaredoxin
626222222Isocitrate lyase family
323222216Serine hydroxymethyltransferase
53122215Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
232336322KOW motif
1113Ribosomal protein L34
333322319RF-1 domain
413235119Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
656556639Protein phosphatase 2C
322223216Nucleotidyl transferase
714324122Carbonic anhydrase
11111218Phosphoribulokinase / Uridine kinase family
756546437Fatty acid desaturase
646666640MutS domain V
11111117Delta-aminolevulinic acid dehydratase
715323122Arginase family
666666642MCM P-loop domain
211121210Squalene/phytoene synthase
771191081163FHA domain
75214234273740276AMP-binding enzyme
433343323G-protein alpha subunit
9791097657HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
20889810972His Kinase A (phospho-acceptor) domain
223333218Armadillo/beta-catenin-like repeat
30202922222423170Tetratricopeptide repeat
232345423Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
1298109111170BRCA1 C Terminus (BRCT) domain
1045576441Glycosyl transferases group 1
632633326Glycosyl transferase family 2
211113110SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
10362223Pectate lyase
32319ribonuclease
21111118Urease, gamma subunit
733335529CoA-ligase
219141781917105Phosphopantetheine attachment site
333433322Formyl transferase
11813888864Metallopeptidase family M24
14141415141613100Leucine Rich Repeat
72203923242219219alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444444428PB1 domain
222222214Staphylococcal nuclease homologue
98101011101068Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
533345427Zinc finger, ZZ type
11122119HRDC domain
1289999864CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
443445529S1 RNA binding domain
11111117HIUase/Transthyretin family
324233320AhpC/TSA family
644444430tRNA synthetases class I (W and Y)
11114UvrD/REP helicase N-terminal domain
1135674440Rhodanese-like domain
222222214Universal stress protein family
71194426314027258Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
9810888960tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1121117PDZ domain
513323421Class II Aldolase and Adducin N-terminal domain
1144444334Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
443553529Fes/CIP4, and EFC/F-BAR homology domain
344555430IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
454445430Phospholipase D Active site motif
811111114Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
444444428RasGEF domain
444442426RasGEF N-terminal motif
888888856RhoGAP domain
566665640RhoGEF domain
434243323SPRY domain
233333320RNA polymerase Rpb1, domain 2
312233317Guanylate kinase
445454430Gelsolin repeat
898777753UBA/TS-N domain
14151714151516106PHD-finger
11111117GGL domain
665666641HECT-domain (ubiquitin-transferase)
121222111Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
444434427Ribonuclease III domain
223312215Region in Clathrin and VPS
223323318RanBP1 domain
222222214PPIC-type PPIASE domain
231332216Zn-finger in Ran binding protein and others
16141616171514108Zinc finger C-x8-C-x5-C-x3-H type (and similar)
413221215Poly(ADP-ribose) polymerase catalytic domain
1111116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
51267136355136306F-box domain
11111117Elongation factor 1 gamma, conserved domain
1024233226Calpain family cysteine protease
223122214Copper fist DNA binding domain
657555639CRAL/TRIO domain
1344575644BTB/POZ domain
2124211Ricin-type beta-trefoil lectin domain
11121118Inhibitor of Apoptosis domain
434343324Voltage gated chloride channel
553232222Caspase domain
186175135266GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11POLO box duplicated region
33261915182518154ABC transporter transmembrane region
99Integrase core domain
1257466545FAD binding domain
13267310849Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
1365555544Insulinase (Peptidase family M16)
433333322Dehydrogenase E1 component
11111117Lumazine binding domain
666665641Elongation factor G C-terminus
646554434HMGL-like
444444428DnaJ central domain
112Sulfotransferase domain
212211110Starch binding domain
232222215Ribosomal protein L1p/L10e family
167151189672Cation transporting ATPase, C-terminus
2281613910684Cation transporter/ATPase, N-terminus
11211118dUTPase
547444432Aconitase C-terminal domain
433333322Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
1751215817983Acyl transferase domain
21111118Urease beta subunit
12113456445Dihydrodipicolinate synthetase family
53254234323129246haloacid dehalogenase-like hydrolase
828617537Glycosyl hydrolases family 2
2851289191293Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
111115Acylphosphatase
511111111Adenylosuccinate synthetase
312111110Asparaginase, N-terminal
125212215Peptidase S24-like
212212111Inorganic pyrophosphatase
218118913979Glycosyl hydrolases family 16
311212212Glycosyl hydrolases family 15
22210428250NADH:flavin oxidoreductase / NADH oxidase family
6131221163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
414213116Glycosyl hydrolase family 20, catalytic domain
546545635HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
298321221125119GMC oxidoreductase
212342216Asparagine synthase
1314173214283Fungal cellulose binding domain
555555535Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
42514117Flavin-binding monooxygenase-like
112LPXTG cell wall anchor motif
333333321tRNA synthetases class I (E and Q), catalytic domain
214121213tRNA synthetases class I (R)
344433324XPG N-terminal domain
164135610660Metallo-beta-lactamase superfamily
411129F5/8 type C domain
222222214Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
322222215Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
21111219Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
8313584243Dioxygenase
122332316CNH domain
222211111Diacylglycerol kinase catalytic domain
877684646Dual specificity phosphatase, catalytic domain
44
333223218P21-Rho-binding domain
1211131211121384PX domain
233333320Ras association (RalGDS/AF-6) domain
444554430UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
174106312658Carbon-nitrogen hydrolase
411118N-acetyltransferase
1111116Prephenate dehydratase
11PKD domain
434544529Syntaxin
554545533Pumilio-family RNA binding repeat
11Apidaecin
656665640Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
232222215ER lumen protein retaining receptor
222222214Glycoprotease family
21211119Histidinol dehydrogenase
434444427impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
12111118Translationally controlled tumour protein
3736221Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
445454430Histone deacetylase domain
613223219POT family
11111117PWWP domain
151123111591195SET domain
8311467544Isochorismatase family
424332220Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
344444427XPG I-region
111115Acetokinase family
233412DNA photolyase
112Cation-independent mannose-6-phosphate receptor repeat
2114Nitroreductase family
23162152664Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111