PFAM Domains • Syncephalis fuscata S228 v1.0
Annotations/GenomesCoere1Conco1Conth1Marpt1Rambr1Synfus1Synplu1TotalAnnotation Description
PFAMs
5,7667,0716,6936,2966,4507,7707,56347,609
221811427 transmembrane receptor (rhodopsin family)
117 transmembrane sweet-taste receptor of 3 GCPR
36343537403836256ATPase family associated with various cellular activities (AAA)
57314143615246331ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
15161815171414109Elongation factor Tu GTP binding domain
131210111311979Helix-loop-helix DNA-binding domain
10132227Hsp20/alpha crystallin family
71077105652Hsp70 protein
11991189865KH domain
1717Kunitz/Bovine pancreatic trypsin inhibitor domain
111115SH2 domain
18272722231414145SH3 domain
10891014121073Actin
202829191284120Ankyrin repeat
777798853ADP-ribosylation factor family
4326123333Eukaryotic aspartyl protease
355325427Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11221119Cytochrome c
1211139Double-stranded RNA binding motif
172428142511110EF hand
1121164Fe-4S binding domain
11Fibronectin type II domain
12115Fibronectin type III domain
11Globin
5281773843102Glutathione S-transferase, C-terminal domain
11112118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
7274861646114Homeodomain
11Laminin EGF domain
433723325lactate/malate dehydrogenase, NAD binding domain
7126868855Myosin head (motor domain)
121347982514536439Cytochrome P450
94110125931282552321,037Protein kinase domain
1115914811977Pyridine nucleotide-disulphide oxidoreductase
21282922302928187Ras family
289239942Response regulator receiver domain
2121242225RNase H
65606066566479450RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
11Serpin (serine protease inhibitor)
23388731Copper/zinc superoxide dismutase (SODC)
213231214Iron/manganese superoxide dismutases, alpha-hairpin domain
746316508859287Subtilase family
10107188131177Sugar (and other) transporter
1216131215141395Thioredoxin
1574602751159251Trypsin
4104486642Tubulin/FtsZ family, GTPase domain
112von Willebrand factor type A domain
3269503349119253Zinc finger, C2H2 type
4637415467611262Zinc finger, C3HC4 type (RING finger)
81475119559Zinc knuckle
323324421Protein-tyrosine phosphatase
30592143342926242short chain dehydrogenase
153225142279124Zinc-binding dehydrogenase
444444529Thiolase, N-terminal domain
9322421142Beta-ketoacyl synthase, N-terminal domain
4435333252Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
778787852Glutamine amidotransferase class-I
9910109111068TCP-1/cpn60 chaperonin family
112ATP synthase A chain
122122212Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
20342024192222161E1-E2 ATPase
13999105661Core histone H2A/H2B/H3/H4
21214Copper binding proteins, plastocyanin/azurin family
123111110Alpha amylase, catalytic domain
485436535Phorbol esters/diacylglycerol binding domain (C1 domain)
639665540Bacterial transferase hexapeptide (six repeats)
444446632tRNA synthetases class I (I, L, M and V)
1610101014131184Cyclin, N-terminal domain
1114512Carboxylesterase family
454452428DNA polymerase family B
433333322ATP synthase subunit C
122121110Peroxidase
272029Beta-lactamase
342211114C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
18242920142221148Calcineurin-like phosphoesterase
143264323Cellulase (glycosyl hydrolase family 5)
677666745tRNA synthetases class II (D, K and N)
34353937423837262Mitochondrial carrier protein
15161715131314103Aminotransferase class I and II
10879107556Phosphoribosyl transferase domain
141317127131288Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222122213Ribosomal protein S4/S9 N-terminal domain
232222215Ribosomal protein S12/S23
11111218Chaperonin 10 Kd subunit
53025791214102C2 domain
15283215141312129PH domain
7911546648bZIP transcription factor
8127914141175Aldehyde dehydrogenase family
24120102281797307Fungal Zn(2)-Cys(6) binuclear cluster domain
17222018151717126Cytochrome b5-like Heme/Steroid binding domain
11111117Oxidoreductase molybdopterin binding domain
89712116659Oxidoreductase NAD-binding domain
17131415161718110SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
19151619182220129Ubiquitin-conjugating enzyme
555555535Isocitrate/isopropylmalate dehydrogenase
222231214Ribosomal Proteins L2, RNA binding domain
167Chitinase class I
223234319Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
12111118Dihydrofolate reductase
12115Chitin recognition protein
822181193927134Cysteine-rich secretory protein family
1112117Ribosomal protein S3, C-terminal domain
112Annexin
3227Eukaryotic-type carbonic anhydrase
3443333232-oxoacid dehydrogenases acyltransferase (catalytic domain)
313222215Catalase
1111116Disintegrin
402521995UDP-glucoronosyl and UDP-glucosyl transferase
334322219Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
223222215Thiamine pyrophosphate enzyme, central domain
344333323Lyase
322322216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22116Ferritin-like domain
12211119Adenylate and Guanylate cyclase catalytic domain
11111218ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11113119Pyruvate kinase, barrel domain
15151411121518100Kinesin motor domain
26232527302929189DnaJ domain
1414141414151499Proteasome subunit
32532419Major intrinsic protein
11112118ATP synthase
2222322153'5'-cyclic nucleotide phosphodiesterase
1221219Profilin
211222212Ribosomal protein L22p/L17e
212222213Ribosomal protein L14p/L23e
1314111410121084Ubiquitin family
345535530Cofilin/tropomyosin-type actin-binding protein
22225342014-3-3 protein
373541124Alkaline phosphatase
3011146465Zinc carboxypeptidase
527239191710110Aldo/keto reductase family
2116161923911115Myb-like DNA-binding domain
431453323Forkhead domain
11111218Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
355434428FKBP-type peptidyl-prolyl cis-trans isomerase
162112114Glutathione peroxidase
111216
613151474362Flavodoxin
222232215Calreticulin family
745319242522163Common central domain of tyrosinase
484466739Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
37394139394343281DEAD/DEAH box helicase
63606561686664447Helicase conserved C-terminal domain
111115Fructose-bisphosphate aldolase class-I
12111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
12413213Pyridoxal-dependent decarboxylase, C-terminal sheet domain
21222110Ribosomal protein L5
563543329Pyridoxal-dependent decarboxylase conserved domain
122113313Citrate synthase, C-terminal domain
545645534GHMP kinases N terminal domain
576667744Biotin carboxylase, N-terminal domain
22111119Tryptophan synthase alpha chain
998978858Pyridoxal-phosphate dependent enzyme
101691113111181NUDIX domain
533575432pfkB family carbohydrate kinase
222232215Ribosomal protein L3
222222113Ribosomal protein L11, RNA binding domain
662645534Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
444453428ATP synthase alpha/beta chain, C terminal domain
596677747Calponin homology (CH) domain
455553330Glutamine amidotransferases class-II
212222213Ribosomal protein S15
111115'Cold-shock' DNA-binding domain
11111117Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
232222215Ribosomal protein S2
333422219SRF-type transcription factor (DNA-binding and dimerisation domain)
14198138111083GATA zinc finger
714412153156Amino acid permease
9151210171331107Prolyl oligopeptidase family
222112212Ribosomal protein L30p/L7e
6679311951Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
464434429Aconitase family (aconitate hydratase)
43643222Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
544463329Nucleoside diphosphate kinase
234222217Tetraspanin family
122222213Ribosomal protein S10p/S20e
91426189866Arrestin (or S-antigen), N-terminal domain
11111128Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
11112118SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
335473227Polyprenyl synthetase
422335221Hexokinase
433435527Dynamin family
112122211Biopterin-dependent aromatic amino acid hydroxylase
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
133112213Rieske [2Fe-2S] domain
33Bacterial regulatory proteins, lacI family
22Proton-conducting membrane transporter
798978755Biotin-requiring enzyme
11111117Phosphofructokinase
222221213Ribosomal protein S17
111411110Hydroxymethylglutaryl-coenzyme A reductase
211311110FGGY family of carbohydrate kinases, N-terminal domain
51111110Sodium:dicarboxylate symporter family
561179101058Enoyl-CoA hydratase/isomerase
322222215Ribosomal protein S9/S16
532523222Transcription factor TFIIB repeat
854735537Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
1097712137Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
11111229Phosphatidylinositol-specific phospholipase C, X domain
232234521D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
311311111Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
131131845Multicopper oxidase
6774149956WW domain
222233317Ribosomal RNA adenine dimethylase
120108111120108127127821WD domain, G-beta repeat
2225103428Heavy-metal-associated domain
354334426Adenylate kinase
212223315Phosphoglucomutase/phosphomannomutase, C-terminal domain
222221213Ribosomal protein S8
222222214Ribosomal protein S11
735796542LIM domain
212125518Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
11
222222214chorismate binding enzyme
33323231960s Acidic ribosomal protein
444443528Prenyltransferase and squalene oxidase repeat
757754338Protein kinase C terminal domain
111115Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
1281011119869Bromodomain
6151261191170Acyl-CoA dehydrogenase, C-terminal domain
15181215151615106Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
195536433Ribonuclease T2 family
516125144460HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11114Urease alpha-subunit, N-terminal domain
811414143458Serine carboxypeptidase
869789653Phosphatidylinositol 3- and 4-kinase
11211118Transketolase, thiamine diphosphate binding domain
111115WHEP-TRS domain
212122212Inositol monophosphatase family
555695540Glutaredoxin
123111110Isocitrate lyase family
222222214Serine hydroxymethyltransferase
11114Iron-containing alcohol dehydrogenase
322122214Ribosomal protein L10
655635737KOW motif
11111117Ribosomal protein L34
112Ribosomal protein L33
323432320RF-1 domain
11121118Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
21121119Glucose-6-phosphate dehydrogenase, NAD binding domain
566555739Protein phosphatase 2C
223323318Nucleotidyl transferase
112261114Carbonic anhydrase
21222312Phosphoribulokinase / Uridine kinase family
667776544Fatty acid desaturase
655655436MutS domain V
11111117Delta-aminolevulinic acid dehydratase
11111117Arginase family
888886652MCM P-loop domain
111212210Squalene/phytoene synthase
95101168655FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
24452144211816189AMP-binding enzyme
273242222G-protein alpha subunit
1961114127877HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
164124422His Kinase A (phospho-acceptor) domain
634643329Armadillo/beta-catenin-like repeat
19222221221719142Tetratricopeptide repeat
2135443334Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
856898650BRCA1 C Terminus (BRCT) domain
544555533Glycosyl transferases group 1
213222214Glycosyl transferase family 2
131122212SAM domain (Sterile alpha motif)
111126linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
11114Urease, gamma subunit
333332320CoA-ligase
2106222226Phosphopantetheine attachment site
322222215Formyl transferase
89881191265Metallopeptidase family M24
142120172645107Leucine Rich Repeat
152624232155119alpha/beta hydrolase fold
443353325RNA polymerase Rpb2, domain 6
464398741PB1 domain
21222211Staphylococcal nuclease homologue
914101011161686Rab-GTPase-TBC domain
1111116Tudor domain
11111117WH1 domain
333333422Zinc finger, ZZ type
11211118HRDC domain
1110111312141384CBS domain
212222213Ribosomal protein L13
222242216Ribosomal protein L4/L1 family
11111117Clp protease
342444425S1 RNA binding domain
121217HIUase/Transthyretin family
3414372336AhpC/TSA family
454464431tRNA synthetases class I (W and Y)
1113UvrD/REP helicase N-terminal domain
654855538Rhodanese-like domain
422125521Universal stress protein family
13251716201413118Acetyltransferase (GNAT) family
12111118SecE/Sec61-gamma subunits of protein translocation complex
11112118C-terminal regulatory domain of Threonine dehydratase
222233317AIR synthase related protein, N-terminal domain
910101098864tRNA synthetase class II core domain (G, H, P, S and T)
14212212SpoU rRNA Methylase family
233221114Tetrapyrrole (Corrin/Porphyrin) Methylases
21111118Glycosyl transferase family, a/b domain
12115PDZ domain
211221110Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
333123520Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
435355429Fes/CIP4, and EFC/F-BAR homology domain
544633328IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
232231114Phospholipase D Active site motif
1272250Regulator of G protein signaling domain
765655438GTPase-activator protein for Ras-like GTPase
31273810952RasGEF domain
396237535RasGEF N-terminal motif
121014121610983RhoGAP domain
12131411112831120RhoGEF domain
5215575544SPRY domain
434333323RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
234343322Gelsolin repeat
101099158768UBA/TS-N domain
1719111412101194PHD-finger
1321119GGL domain
7677127854HECT-domain (ubiquitin-transferase)
21211119Helix-hairpin-helix motif
221222112MSP (Major sperm protein) domain
223221214Ribonuclease III domain
222225520Region in Clathrin and VPS
322333319RanBP1 domain
222221112PPIC-type PPIASE domain
232412317Zn-finger in Ran binding protein and others
15142017148997Zinc finger C-x8-C-x5-C-x3-H type (and similar)
3216B-box zinc finger
4217Poly(ADP-ribose) polymerase catalytic domain
1113Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
13627717125210306F-box domain
121116Elongation factor 1 gamma, conserved domain
111112714Calpain family cysteine protease
11111117Copper fist DNA binding domain
9163984453CRAL/TRIO domain
251216623BTB/POZ domain
7613Ricin-type beta-trefoil lectin domain
11114Inhibitor of Apoptosis domain
333323320Voltage gated chloride channel
244284428Caspase domain
8871127851GDSL-like Lipase/Acylhydrolase
12111118Poly-adenylate binding protein, unique domain
1211117POLO box duplicated region
18222615522722182ABC transporter transmembrane region
11Integrase core domain
444544328FAD binding domain
131117Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
12111118HAMP domain
222222113ribosomal L5P family C-terminus
14468105653Insulinase (Peptidase family M16)
544534429Dehydrogenase E1 component
11111117Lumazine binding domain
769786649Elongation factor G C-terminus
444454429HMGL-like
445455431DnaJ central domain
423423321Ribosomal protein L1p/L10e family
810111189764Cation transporting ATPase, C-terminus
8231611139888Cation transporter/ATPase, N-terminus
1121314123dUTPase
454424427Aconitase C-terminal domain
333333422Amino acid kinase family
21111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
8222321139Acyl transferase domain
11114Urease beta subunit
11Dihydrodipicolinate synthetase family
29382740261311184haloacid dehalogenase-like hydrolase
1320252514108115Glycosyl hydrolases family 18
11211118Proliferating cell nuclear antigen, N-terminal domain
11114Translation initiation factor IF-3, C-terminal domain
11Acylphosphatase
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
453333324Peptidase S24-like
222221112Inorganic pyrophosphatase
51411687758Glycosyl hydrolases family 16
211313314Glycosyl hydrolases family 15
2179453242NADH:flavin oxidoreductase / NADH oxidase family
2123322153-hydroxyacyl-CoA dehydrogenase, C-terminal domain
463812630Glycosyl hydrolase family 20, catalytic domain
334233321HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
526114GMC oxidoreductase
222322215Asparagine synthase
665686643Septin
112217EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
111115Flavin-binding monooxygenase-like
533333323tRNA synthetases class I (E and Q), catalytic domain
112131110tRNA synthetases class I (R)
343436528XPG N-terminal domain
976775647Metallo-beta-lactamase superfamily
1113F5/8 type C domain
553545532Choline/Carnitine o-acyltransferase
1113Putative esterase
224Glycosyl hydrolase family 9
11112118Ferrochelatase
222242216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
433443324RNB domain
233223621CNH domain
22232213Diacylglycerol kinase catalytic domain
323336525Dual specificity phosphatase, catalytic domain
11112118MyTH4 domain
466263330P21-Rho-binding domain
91213101091174PX domain
242324421Ras association (RalGDS/AF-6) domain
376645435UBX domain
333344222VHS domain
11111117Phosphoinositide 3-kinase C2
211222212DAHP synthetase I family
376455434Carbon-nitrogen hydrolase
74415N-acetyltransferase
121122211Prephenate dehydratase
534423324Syntaxin
457433329Pumilio-family RNA binding repeat
656666641Histone-like transcription factor (CBF/NF-Y) and archaeal histone
211222212Pterin binding enzyme
13111119ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
22232314impB/mucB/samB family
112Ribonuclease P
221229
11111218Ribosomal L15
111113311Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11112118Ribosomal prokaryotic L21 protein
21111118Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
215232217RNA pseudouridylate synthase
646533330Histone deacetylase domain
1712552133POT family
11114412PWWP domain
121312158121082SET domain
1112117Isochorismatase family
11316Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
224ATP P2X receptor
454446532XPG I-region
112DNA photolyase
44NlpC/P60 family
11114Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
222221213Cytosol aminopeptidase family, catalytic domain
246Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
133122315Acyl CoA binding protein
544756536Cullin family
111115Elongation factor TS
222312214FAD binding domain
6135644442EamA-like transporter family