PFAM Domains • Rhodocollybia butyracea AH 40177 v1.0
Annotations/GenomesGyman1Gymlu1Marfi1Monpe1_1Ompol1Rhobut1_1TotalAnnotation Description
PFAMs
11,68910,6749,4185,1716,93912,57256,463
117 transmembrane receptor (rhodopsin family)
584251334241267ATPase family associated with various cellular activities (AAA)
826054264454320ABC transporter
54424524ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
24171691520101Elongation factor Tu GTP binding domain
1415159122186Helix-loop-helix DNA-binding domain
97957542Hsp20/alpha crystallin family
2998981679Hsp70 protein
98837742KH domain
21115SH2 domain
313629152714152SH3 domain
1911157121478Actin
6211124132753290Ankyrin repeat
213PAN domain
78847741ADP-ribosylation factor family
32392072428150Eukaryotic aspartyl protease
33423318Cyclic nucleotide-binding domain
1111116Cytochrome c
13111125951Double-stranded RNA binding motif
181719916180EF hand
1312294Fe-4S binding domain
11114Fibronectin type III domain
2513189102196Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
123Hemopexin
119121101154Homeodomain
33223215lactate/malate dehydrogenase, NAD binding domain
975941044Myosin head (motor domain)
3192633122091182561,477Cytochrome P450
272186261991232741,215Protein kinase domain
20331871512105Pyridine nucleotide-disulphide oxidoreductase
332828182428159Ras family
1111105111361Response regulator receiver domain
3658121062RNase H
797573296865389RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
139444Reverse transcriptase (RNA-dependent DNA polymerase)
22423215Iron/manganese superoxide dismutases, alpha-hairpin domain
359752554Subtilase family
775443623350319Sugar (and other) transporter
1212111091569Thioredoxin
126655539Tubulin/FtsZ family, GTPase domain
15145236von Willebrand factor type A domain
9610174112737346Zinc finger, C2H2 type
79746210399273Zinc finger, C3HC4 type (RING finger)
284731231416159Zinc knuckle
26122417Protein-tyrosine phosphatase
161152965163106629short chain dehydrogenase
925948164556316Zinc-binding dehydrogenase
55454427Thiolase, N-terminal domain
1010465843Beta-ketoacyl synthase, N-terminal domain
433132162Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
1111127Enolase, C-terminal TIM barrel domain
979681049Glutamine amidotransferase class-I
10121010101163TCP-1/cpn60 chaperonin family
43424320Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
1212141282078E1-E2 ATPase
392715101623130Core histone H2A/H2B/H3/H4
224Copper binding proteins, plastocyanin/azurin family
1812739756Alpha amylase, catalytic domain
65625529Phorbol esters/diacylglycerol binding domain (C1 domain)
651025634Bacterial transferase hexapeptide (six repeats)
44373425tRNA synthetases class I (I, L, M and V)
2415122131682Cyclin, N-terminal domain
814851482037285Carboxylesterase family
54424524DNA polymerase family B
33313316ATP synthase subunit C
3313687774Peroxidase
145652638Beta-lactamase
578431340C-5 cytosine-specific DNA methylase
313032102535163Calcineurin-like phosphoesterase
1416127102079Cellulase (glycosyl hydrolase family 5)
78686641tRNA synthetases class II (D, K and N)
404044433540242Mitochondrial carrier protein
11recA bacterial DNA recombination protein
192320131620111Aminotransferase class I and II
67746535Phosphoribosyl transferase domain
17201410111688Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1211117Phosphoglycerate kinase
122229Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
2117188161595C2 domain
202020416888PH domain
589291952bZIP transcription factor
223726231523146Aldehyde dehydrogenase family
13410810173071451Fungal Zn(2)-Cys(6) binuclear cluster domain
322223101824129Cytochrome b5-like Heme/Steroid binding domain
32323215Oxidoreductase molybdopterin binding domain
181211310963Oxidoreductase NAD-binding domain
282924192432156SNF2 family N-terminal domain
12321211Ribosomal protein S7p/S5e
272522132124132Ubiquitin-conjugating enzyme
77636635Isocitrate/isopropylmalate dehydrogenase
32222213Ribosomal Proteins L2, RNA binding domain
92242221Hsp90 protein
2322211Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111115Dihydrofolate reductase
11Chitin recognition protein
64754329Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
103222322Cupin
26112517Annexin
1539Eukaryotic-type carbonic anhydrase
333533202-oxoacid dehydrogenases acyltransferase (catalytic domain)
35353120Catalase
1131118Disintegrin
211111351465UDP-glucoronosyl and UDP-glucosyl transferase
45535527Aminotransferase class-III
2222210Ribosomal protein S19
2211118DNA gyrase B
34313519Thiamine pyrophosphate enzyme, central domain
44514523Lyase
322222242Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
221117Adenylate and Guanylate cyclase catalytic domain
111115ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
22222313Indole-3-glycerol phosphate synthase
23732724Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
15119891264Kinesin motor domain
333132132632167DnaJ domain
1714159141483Proteasome subunit
66443528Major intrinsic protein
2211118ATP synthase
113373330Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
12212210Ribosomal protein L22p/L17e
22212211Ribosomal protein L14p/L23e
2215134142290Ubiquitin family
55525628Cofilin/tropomyosin-type actin-binding protein
7221221614-3-3 protein
1234111Alkaline phosphatase
1111116Zinc carboxypeptidase
876551374364347Aldo/keto reductase family
2122156171596Myb-like DNA-binding domain
58743734Forkhead domain
22116Glycosyl hydrolases family 32 N-terminal domain
111126Ribosomal protein L16p/L10e
22212211Ribosomal protein S14p/S29e
4444521FKBP-type peptidyl-prolyl cis-trans isomerase
111115Glutathione peroxidase
11114
127827440Flavodoxin
112Protamine P1
1112117Calreticulin family
213435229Common central domain of tyrosinase
7127561451Aminotransferase class-V
652221027Ribonucleotide reductase, small chain
865240274995349DEAD/DEAH box helicase
12098803483117532Helicase conserved C-terminal domain
1111116Fructose-bisphosphate aldolase class-I
111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
221229Ribosomal protein L23
2313110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
75634328Pyridoxal-dependent decarboxylase conserved domain
43443422Citrate synthase, C-terminal domain
66525731GHMP kinases N terminal domain
66836635Biotin carboxylase, N-terminal domain
12311210Tryptophan synthase alpha chain
8912107753Pyridoxal-phosphate dependent enzyme
1818176121687NUDIX domain
65513626pfkB family carbohydrate kinase
19198481472Glycosyl hydrolases family 28
172222227Ribosomal protein L3
2222210Ribosomal protein L11, RNA binding domain
14118661358Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
123Lipoxygenase
44424523ATP synthase alpha/beta chain, C terminal domain
55535528Calponin homology (CH) domain
66785436Glutamine amidotransferases class-II
22212211Ribosomal protein S15
911473741Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
71112214Ribonucleotide reductase, all-alpha domain
22422214Ribosomal protein S2
63412218SRF-type transcription factor (DNA-binding and dimerisation domain)
2022185101691GATA zinc finger
413424222011152Amino acid permease
1563351143Prolyl oligopeptidase family
1112128Ribosomal protein L30p/L7e
121413581264Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
55535629Aconitase family (aconitate hydratase)
75494332Glycosyl hydrolase family 10
4422416Glycosyl hydrolases family 17
22212211Ribosomal protein S5, N-terminal domain
32212212Nucleoside diphosphate kinase
2311310Tetraspanin family
2222210Ribosomal protein S10p/S20e
22312212Arrestin (or S-antigen), N-terminal domain
1112117Phosphoglucose isomerase
21141110Carbohydrate phosphorylase
1111116SecY translocase
211116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
610657943Polyprenyl synthetase
22232213Hexokinase
107714938Dynamin family
112116Transcription factor TFIID (or TATA-binding protein, TBP)
53423320Rieske [2Fe-2S] domain
1113Phytochrome region
991368853Biotin-requiring enzyme
1113118Phosphofructokinase
22211210Ribosomal protein S17
121111117Hydroxymethylglutaryl-coenzyme A reductase
44324421FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
101493101662Enoyl-CoA hydratase/isomerase
22212211Ribosomal protein S9/S16
22232213Transcription factor TFIIB repeat
68613630Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
161062971381Chromo (CHRromatin Organisation MOdifier) domain
3332314Phosphatidylinositol-specific phospholipase C, Y domain
43323520Phosphatidylinositol-specific phospholipase C, X domain
96627737D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3332415Malic enzyme, N-terminal domain
12111176-phosphogluconate dehydrogenase, C-terminal domain
25192318820113Multicopper oxidase
11Granulin
8121228749WW domain
52211213Ribosomal RNA adenine dimethylase
261406124701141781,153WD domain, G-beta repeat
44312418Heavy-metal-associated domain
43313317Adenylate kinase
112127Phosphoglucomutase/phosphomannomutase, C-terminal domain
1111127Ribosomal protein S8
22312212Ribosomal protein S11
46625730LIM domain
11Matrixin
33315318Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
11REV protein (anti-repression trans-activator protein)
22223213chorismate binding enzyme
4431331860s Acidic ribosomal protein
44465326Prenyltransferase and squalene oxidase repeat
87728638Protein kinase C terminal domain
111115Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
1411106101162Bromodomain
11Bacterial regulatory proteins, tetR family
101110471052Acyl-CoA dehydrogenase, C-terminal domain
1515154151276Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
33211111Ribonuclease T2 family
55334424HSF-type DNA-binding
22212211SRP54-type protein, GTPase domain
1111127Urease alpha-subunit, N-terminal domain
221517211214101Serine carboxypeptidase
158748850Phosphatidylinositol 3- and 4-kinase
13353116Transketolase, thiamine diphosphate binding domain
6412417Glycosyl hydrolases family 11
112WHEP-TRS domain
53233420Inositol monophosphatase family
5555525Glutaredoxin
65843228Isocitrate lyase family
14211110Serine hydroxymethyltransferase
33223316Iron-containing alcohol dehydrogenase
132118Ribosomal protein L10
55525628KOW motif
1113Ribosomal protein L34
11Ribosomal protein L33
2222311RF-1 domain
4213212Sodium:solute symporter family
11215Imidazoleglycerol-phosphate dehydratase
211116DNA polymerase family A
1112117IMP dehydrogenase / GMP reductase domain
25113113Glucose-6-phosphate dehydrogenase, NAD binding domain
151310592779Protein phosphatase 2C
33212314Nucleotidyl transferase
44422521Carbonic anhydrase
111115Phosphoribulokinase / Uridine kinase family
209109131677Fatty acid desaturase
97666741MutS domain V
1111116Delta-aminolevulinic acid dehydratase
55445528Arginase family
76666637MCM P-loop domain
1112139Squalene/phytoene synthase
151474112374FHA domain
677754323682348AMP-binding enzyme
302526131423131G-protein alpha subunit
25282441430125HMG (high mobility group) box
88728639His Kinase A (phospho-acceptor) domain
212222222Armadillo/beta-catenin-like repeat
1026431182519259Tetratricopeptide repeat
33323317Ion transport protein
24111110DNA gyrase/topoisomerase IV, subunit A
1291068752BRCA1 C Terminus (BRCT) domain
88736638Glycosyl transferases group 1
4643522Glycosyl transferase family 2
2222210SAM domain (Sterile alpha motif)
3433316linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
337114Pectate lyase
131117ribonuclease
1111138Urease, gamma subunit
44333421CoA-ligase
2416126141486Phosphopantetheine attachment site
22211210Formyl transferase
1110128101667Metallopeptidase family M24
172016615377Leucine Rich Repeat
735462233716265alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
64634932PB1 domain
22212211Staphylococcal nuclease homologue
111311291561Rab-GTPase-TBC domain
1111116Tudor domain
11125WH1 domain
44513522Zinc finger, ZZ type
111115HRDC domain
1089481049CBS domain
22222212Ribosomal protein L13
22212211Ribosomal protein L4/L1 family
111115Clp protease
6333419S1 RNA binding domain
1111116HIUase/Transthyretin family
910546842AhpC/TSA family
54444526tRNA synthetases class I (W and Y)
111126UvrD/REP helicase N-terminal domain
461014934Rhodanese-like domain
22212211Universal stress protein family
55403692025185Acetyltransferase (GNAT) family
111115SecE/Sec61-gamma subunits of protein translocation complex
111115C-terminal regulatory domain of Threonine dehydratase
22212211AIR synthase related protein, N-terminal domain
76626532tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
44313217Tetrapyrrole (Corrin/Porphyrin) Methylases
22211210Glycosyl transferase family, a/b domain
106532531Class II Aldolase and Adducin N-terminal domain
44424523Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
66645633Fes/CIP4, and EFC/F-BAR homology domain
43413217IQ calmodulin-binding motif
72212216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
44313116Phospholipase D Active site motif
21111410Regulator of G protein signaling domain
46424424GTPase-activator protein for Ras-like GTPase
96736637RasGEF domain
77727535RasGEF N-terminal motif
1211147111368RhoGAP domain
1919204132297RhoGEF domain
54433524SPRY domain
85323324RNA polymerase Rpb1, domain 2
111115Guanylate kinase
34414420Gelsolin repeat
79949644UBA/TS-N domain
2117193141488PHD-finger
1124GGL domain
56545631HECT-domain (ubiquitin-transferase)
112116Helix-hairpin-helix motif
112116MSP (Major sperm protein) domain
1010735439Ribonuclease III domain
142212425Region in Clathrin and VPS
33312517RanBP1 domain
122229PPIC-type PPIASE domain
3433215Zn-finger in Ran binding protein and others
30282571911120Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1113B-box zinc finger
125543938Poly(ADP-ribose) polymerase catalytic domain
52311214Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
246185174264765743F-box domain
4111119Elongation factor 1 gamma, conserved domain
12452115Calpain family cysteine protease
332311Copper fist DNA binding domain
937878877CRAL/TRIO domain
111011172363BTB/POZ domain
74402356Ricin-type beta-trefoil lectin domain
111115Inhibitor of Apoptosis domain
33333318Voltage gated chloride channel
13209263888Caspase domain
121110351354GDSL-like Lipase/Acylhydrolase
221229Poly-adenylate binding protein, unique domain
211116POLO box duplicated region
463030152123165ABC transporter transmembrane region
941757Integrase core domain
64725428FAD binding domain
104223526Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
121127HAMP domain
22212211ribosomal L5P family C-terminus
96725534Insulinase (Peptidase family M16)
44424523Dehydrogenase E1 component
1112117Lumazine binding domain
1387371048Elongation factor G C-terminus
45645428HMGL-like
44414421DnaJ central domain
44323521Starch binding domain
22212413Ribosomal protein L1p/L10e family
45874836Cation transporting ATPase, C-terminus
771035941Cation transporter/ATPase, N-terminus
111126dUTPase
65525528Aconitase C-terminal domain
33333318Amino acid kinase family
111115N-(5'phosphoribosyl)anthranilate (PRA) isomerase
1612475650Acyl transferase domain
111137Urease beta subunit
4333215Dihydrodipicolinate synthetase family
353635152415160haloacid dehalogenase-like hydrolase
33333318Glycosyl hydrolases family 2
1513171591685Glycosyl hydrolases family 18
112116Proliferating cell nuclear antigen, N-terminal domain
1112117Adenylosuccinate synthetase
111115Asparaginase, N-terminal
23321314Peptidase S24-like
211116Inorganic pyrophosphatase
10108261349Glycosyl hydrolases family 16
64233523Glycosyl hydrolases family 15
582712191626158NADH:flavin oxidoreductase / NADH oxidase family
1211273-hydroxyacyl-CoA dehydrogenase, C-terminal domain
34223317Glycosyl hydrolase family 20, catalytic domain
55414625HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
487170542339305GMC oxidoreductase
22452217Asparagine synthase
3432931519112Fungal cellulose binding domain
777461041Septin
111115EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
778131137Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
43313317tRNA synthetases class I (E and Q), catalytic domain
2111117tRNA synthetases class I (R)
55625528XPG N-terminal domain
161813591374Metallo-beta-lactamase superfamily
2111117F5/8 type C domain
44454425Choline/Carnitine o-acyltransferase
1111116Putative esterase
1112117Glycosyl hydrolase family 9
1111127Ferrochelatase
22212211Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1112117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
34333319RNB domain
45625325Dioxygenase
8117141243CNH domain
2222210Diacylglycerol kinase catalytic domain
1512158111374Dual specificity phosphatase, catalytic domain
111115MyTH4 domain
43413318P21-Rho-binding domain
1714145131679PX domain
3833219Ras association (RalGDS/AF-6) domain
44413319UBX domain
45625527VHS domain
3111118Phosphoinositide 3-kinase C2
32222314DAHP synthetase I family
651067539Carbon-nitrogen hydrolase
21522214N-acetyltransferase
111115Prephenate dehydratase
35414522Syntaxin
95536735Pumilio-family RNA binding repeat
77725634Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
1311118ER lumen protein retaining receptor
22222212tRNA N6-adenosine threonylcarbamoyltransferase
1111116Histidinol dehydrogenase
33343420impB/mucB/samB family
211116
1111116Ribosomal L15
1111138Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
111115Ribosomal L28 family
1111116Ribosomal L29 protein
111126Ribosomal L39 protein
1111116Ribosomal S17
111115Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
127354940Glycosyl hydrolase family 7
2222210RNA pseudouridylate synthase
76866639Histone deacetylase domain
12652117POT family
2322312PWWP domain
22231891030112SET domain
78935739Isochorismatase family
22212615Permease family
111115Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
955651747XPG I-region
112Acetokinase family
1122219DNA photolyase
112Cation-independent mannose-6-phosphate receptor repeat
32128Nitroreductase family
72211518Cytosol aminopeptidase family, catalytic domain
13251214Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
33333318Acyl CoA binding protein
671265642Cullin family
1111116Elongation factor TS
79565537FAD binding domain
1925264820102O-methyltransferase domain
33314317EamA-like transporter family
3223212
77768742ThiF family
1111116Ribosomal family S4e
21311412Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
63243321Ammonium Transporter Family
83643529Sulfate permease family
111115MATH domain
32212212Dehydratase family
4523519Transaldolase/Fructose-6-phosphate aldolase
1333313Mechanosensitive ion channel
11411210GTP cyclohydrolase II
21111173,4-dihydroxy-2-butanone 4-phosphate synthase
64434526Adaptor complexes medium subunit family
87747740Exonuclease
111115Dipeptidyl peptidase IV (DPP IV) N-terminal region
34245NB-ARC domain
19151115101686Glycosyl hydrolase family 3 N terminal domain
111115Ribosomal protein L44
112Sodium:sulfate symporter transmembrane region
1112117DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
11114HCO3- transporter family
22213313Nucleosome assembly protein (NAP)
35444424Synaptobrevin
4111119GMP synthase C terminal domain
43333319Adenosine/AMP deaminase
106424430Oxidoreductase FAD-binding domain
106212223Thioesterase domain
22212211Histidine biosynthesis protein
33353320Glycosyltransferase family 20
211116UDP-glucose/GDP-mannose dehydrogenase family, central domain
2222210Carbamoyl-phosphate synthase small chain, CPSase domain
2114PAS fold
22222212Probable molybdopterin binding domain
64444426Sec1 family
22242214GDP dissociation inhibitor
778871047Sodium/hydrogen exchanger family
22212413RNA polymerase Rpb3/RpoA insert domain
33333318Initiation factor 2 subunit family
1113PQQ enzyme repeat
22212211Electron transfer flavoprotein domain
1111116Uricase
1112117Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
44353322Gamma-glutamyltranspeptidase
1113Ribosomal L40e family
111115GrpE
3333315TatD related DNase
1111127Inhibitor of apoptosis-promoting Bax1
1112117Eukaryotic DNA topoisomerase I, catalytic core
9333624Dynamin central region
23223126-O-methylguanine DNA methyltransferase, DNA binding domain
22352216Carboxyl transferase domain
11911551960UbiA prenyltransferase family
112DegT/DnrJ/EryC1/StrS aminotransferase family
75433426Endoribonuclease L-PSP
1135Phosphorylase superfamily
111115Mannose-6-phosphate isomerase
1299661052Cys/Met metabolism PLP-dependent enzyme
1311794953Glycosyl hydrolases family 31
11Parvovirus non-structural protein NS1
111115NADH ubiquinone oxidoreductase, 20 Kd subunit
1597126756ABC-2 type transporter