PFAM Domains • Melampsora allii-populina 12AY07 v1.0
Annotations/GenomesAgahy1Croqu1Hetpy1Melap1finSC_191Melli1Mellp2_3Mixos1Pucgr1Pucst1Puctr1Rhosp1Schco3Trisp1TotalAnnotation Description
PFAMs
5,7225,9955,5788,7506,7647,9605,5626,7846,2277,2495,7288,5905,57786,486
11137 transmembrane receptor (rhodopsin family)
30323335293330352639334332430ATPase family associated with various cellular activities (AAA)
30282834273029252831304668434ABC transporter
444474454444456ATP synthase alpha/beta family, nucleotide-binding domain
111216EGF-like domain
13121415121313171213131513175Elongation factor Tu GTP binding domain
97977587988139106Helix-loop-helix DNA-binding domain
155443453943Hsp20/alpha crystallin family
8871197791320777120Hsp70 protein
8885888889797101KH domain
22Methyl-accepting chemotaxis protein (MCP) signalling domain
111111111110SH2 domain
23232515271520282628232720300SH3 domain
999148101099891110125Actin
171517815217161620176016236Ankyrin repeat
2114PAN domain
79779868811777101ADP-ribosylation factor family
1119132721253816141512266243Eukaryotic aspartyl protease
333533332433341Cyclic nucleotide-binding domain
1214Cytochrome b(C-terminal)/b6/petD
1124Cytochrome b/b6/petB
111111111211114Cytochrome c
1111211111323Double-stranded RNA binding motif
201616215215212123132015199EF hand
11121222111154Fe-4S binding domain
111112119Fibronectin type III domain
112Globin
7646559867615993Glutathione S-transferase, C-terminal domain
111222112121118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
87885778613611599Homeodomain
111115Laminin EGF domain
222223222222227lactate/malate dehydrogenase, NAD binding domain
5451459557656682Myosin head (motor domain)
13261035203014162014711431350Cytochrome P450
1081261421551241279511212413198162951,599Protein kinase domain
1110111588108611121110131Pyridine nucleotide-disulphide oxidoreductase
25262580213424252322212726379Ras family
11914101013159141116124148Response regulator receiver domain
22629764219105155RNase H
55696470646157857389527059868RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
32730Retroviral aspartyl protease
151112267Reverse transcriptase (RNA-dependent DNA polymerase)
313272151010264Copper/zinc superoxide dismutase (SODC)
221244112213227Iron/manganese superoxide dismutases, alpha-hairpin domain
4951510135141111335108Subtilase family
34222227202313162118344117308Sugar (and other) transporter
1191110111388151011139139Thioredoxin
45551053561155675Tubulin/FtsZ family, GTPase domain
2241123217von Willebrand factor type A domain
304535284523315241703310037570Zinc finger, C2H2 type
3441314324351107587357130589Zinc finger, C3HC4 type (RING finger)
9421682451581424814782215725Zinc knuckle
225323225222335Protein-tyrosine phosphatase
512729362637502926384411242547short chain dehydrogenase
22121916111419111210264727246Zinc-binding dehydrogenase
374565445664766Thiolase, N-terminal domain
121511121313527Beta-ketoacyl synthase, N-terminal domain
5343223223434402Fe-2S iron-sulfur cluster binding domain
111111111221115Enolase, C-terminal TIM barrel domain
145Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
678127887610787101Glutamine amidotransferase class-I
910102112121112141691010156TCP-1/cpn60 chaperonin family
112ATP synthase A chain
232433334313135Glutamine synthetase, catalytic domain
111121111111215Triosephosphate isomerase
8101219920121017199912166E1-E2 ATPase
22Photosynthetic reaction centre protein
15162922212011241519172213244Core histone H2A/H2B/H3/H4
11Bacterial regulatory helix-turn-helix protein, lysR family
1124Copper binding proteins, plastocyanin/azurin family
1537662436412160Alpha amylase, catalytic domain
233232451415338Phorbol esters/diacylglycerol binding domain (C1 domain)
68511710587764589Bacterial transferase hexapeptide (six repeats)
233645358733557tRNA synthetases class I (I, L, M and V)
118914141291061511139141Cyclin, N-terminal domain
310923132586799263151Carboxylesterase family
444844466644462DNA polymerase family B
343333432333441ATP synthase subunit C
122222222422126Peroxidase
22143618Beta-lactamase
222222332626C-5 cytosine-specific DNA methylase
213NADH dehydrogenase
21221819181619171821202418251Calcineurin-like phosphoesterase
261198163981026393Cellulase (glycosyl hydrolase family 5)
5444444471246870tRNA synthetases class II (D, K and N)
33333341313634344143363736468Mitochondrial carrier protein
16161519141613151713171611198Aminotransferase class I and II
666464789767783Phosphoribosyl transferase domain
13121315151411141316111413174Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111611118Phosphoglycerate kinase
222232222222227Ribosomal protein S4/S9 N-terminal domain
222223232322229Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
111121111111114Chaperonin 10 Kd subunit
131014111012137108111812149C2 domain
20202015201120181526181920242PH domain
7491339753786687bZIP transcription factor
1013121714168121816111610173Aldehyde dehydrogenase family
52335426272429241931458848500Fungal Zn(2)-Cys(6) binuclear cluster domain
17181721161821192121192521254Cytochrome b5-like Heme/Steroid binding domain
11112118Oxidoreductase molybdopterin binding domain
6679677655611788Oxidoreductase NAD-binding domain
181720262723165827111222218405SNF2 family N-terminal domain
222223222622231Ribosomal protein S7p/S5e
17201722181919171818192119244Ubiquitin-conjugating enzyme
555765526975572Isocitrate/isopropylmalate dehydrogenase
222222221222225Ribosomal Proteins L2, RNA binding domain
222232312233229Hsp90 protein
222354224222234Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111112111114Dihydrofolate reductase
11Chitin recognition protein
51041251137643575Cysteine-rich secretory protein family
111131121111116Ribosomal protein S3, C-terminal domain
1121139Cupin
11Annexin
22Eukaryotic-type carbonic anhydrase
2335463345333472-oxoacid dehydrogenases acyltransferase (catalytic domain)
2511049265322152Catalase
121212123411122Disintegrin
1521110UDP-glucoronosyl and UDP-glucosyl transferase
7564435115555570Aminotransferase class-III
22222222122223Ribosomal protein S19
111111121111114DNA gyrase B
321445211444338Thiamine pyrophosphate enzyme, central domain
333553332533344Lyase
112211211122118Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
112111111111114Adenylate and Guanylate cyclase catalytic domain
111111111111113ATP synthase delta (OSCP) subunit
111114111111116Orotidine 5'-phosphate decarboxylase / HUMPS family
211111111322118Indole-3-glycerol phosphate synthase
41225122212125Aromatic amino acid lyase
33Photosystem I psaA/psaB protein
111121111111114Pyruvate kinase, barrel domain
91192081071312198106142Kinesin motor domain
26332452335025323236273025425DnaJ domain
14191417141414151316131414191Proteasome subunit
21332615238101210832135Major intrinsic protein
111111112111114ATP synthase
1135Glycosyl hydrolase family 1
11111111211123'5'-cyclic nucleotide phosphodiesterase
111211111111114Profilin
121221111111217Ribosomal protein L22p/L17e
222232221222226Ribosomal protein L14p/L23e
1211101014109991214137140Ubiquitin family
444554534447457Cofilin/tropomyosin-type actin-binding protein
22225222232212914-3-3 protein
221121332333329Alkaline phosphatase
11212310Zinc carboxypeptidase
2291013161310121012146012213Aldo/keto reductase family
12121461177711811119126Myb-like DNA-binding domain
554435322328349Forkhead domain
1433312221224Glycosyl hydrolases family 32 N-terminal domain
111222111111116Ribosomal protein L16p/L10e
222212122222224Ribosomal protein S14p/S29e
453454434435250FKBP-type peptidyl-prolyl cis-trans isomerase
111111111111113Glutathione peroxidase
1112111212215
4461154355547770Flavodoxin
11Tropomyosin
111211111111114Calreticulin family
88584134Common central domain of tyrosinase
545555564459365Aminotransferase class-V
11Gram-negative porin
211112211123220Ribonucleotide reductase, small chain
36363957386039694856416635620DEAD/DEAH box helicase
646370779775631581201567397651,178Helicase conserved C-terminal domain
111111132111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
212211111122219Ribosomal protein L23
111231111111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112211111111115Ribosomal protein L5
553745521257556Pyridoxal-dependent decarboxylase conserved domain
122323222213227Citrate synthase, C-terminal domain
545568565655469GHMP kinases N terminal domain
4551278555965783Biotin carboxylase, N-terminal domain
111221122211219Tryptophan synthase alpha chain
766896781011689101Pyridoxal-phosphate dependent enzyme
11121020121612101212111414166NUDIX domain
453336454546456pfkB family carbohydrate kinase
12131111314Glycosyl hydrolases family 28
222332222223229Ribosomal protein L3
221211211112219Ribosomal protein L11, RNA binding domain
1379128910138811913130Histidine phosphatase superfamily (branch 1)
111111114211117Thymidylate synthase
444484451454455ATP synthase alpha/beta chain, C terminal domain
454655355545460Calponin homology (CH) domain
464363574755463Glutamine amidotransferases class-II
223232123222228Ribosomal protein S15
2324331324431'Cold-shock' DNA-binding domain
32332374631147Thaumatin family
121211112211117Fructose-1-6-bisphosphatase, N-terminal domain
21112111111114Ribonucleotide reductase, all-alpha domain
222332233422232Ribosomal protein S2
334223322234942SRF-type transcription factor (DNA-binding and dimerisation domain)
1071010688771110127113GATA zinc finger
14192111141112201522172111208Amino acid permease
5457546441157572Prolyl oligopeptidase family
121312211111219Ribosomal protein L30p/L7e
654644857579373Histidine phosphatase superfamily (branch 2)
111112111111114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444455446644458Aconitase family (aconitate hydratase)
6745544540Glycosyl hydrolase family 10
112111111212Glycosyl hydrolases family 17
222222222222226Ribosomal protein S5, N-terminal domain
132222211122122Nucleoside diphosphate kinase
111115Tetraspanin family
111122111112116Ribosomal protein S10p/S20e
3453211135230Arrestin (or S-antigen), N-terminal domain
121211111311117Phosphoglucose isomerase
111115Carbohydrate phosphorylase
111111111211114SecY translocase
11Pili and flagellar-assembly chaperone, PapD N-terminal domain
111121111112115Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222212232422228Ribosomal protein L6
333766346736461Polyprenyl synthetase
222223242222229Hexokinase
545424366639360Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
111111111211215Transcription factor TFIID (or TATA-binding protein, TBP)
432333433342138Rieske [2Fe-2S] domain
112Bacterial regulatory proteins, lacI family
1111111310Phytochrome region
23229Proton-conducting membrane transporter
577101097788899104Biotin-requiring enzyme
111312115111120Phosphofructokinase
222222222222226Ribosomal protein S17
111112113111116Hydroxymethylglutaryl-coenzyme A reductase
332333233423236FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
4871211108897798108Enoyl-CoA hydratase/isomerase
222323222222228Ribosomal protein S9/S16
352222232322232Transcription factor TFIIB repeat
556434552756562Cytidine and deoxycytidylate deaminase zinc-binding region
111111113121116Molybdopterin oxidoreductase
6755215183244294122Chromo (CHRromatin Organisation MOdifier) domain
211111111114218Phosphatidylinositol-specific phospholipase C, Y domain
222222121213224Phosphatidylinositol-specific phospholipase C, X domain
936423411167653D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11211121123117Malic enzyme, N-terminal domain
2111211122121186-phosphogluconate dehydrogenase, C-terminal domain
420316721112913461117Multicopper oxidase
996887766669693WW domain
111111112322118Ribosomal RNA adenine dimethylase
989797106991061011061091131041321051,373WD domain, G-beta repeat
124222322324534Heavy-metal-associated domain
333456344433348Adenylate kinase
211222221121221Phosphoglucomutase/phosphomannomutase, C-terminal domain
211612221121224Ribosomal protein S8
111121121121116Ribosomal protein S11
665557466646571LIM domain
11Matrixin
422433412223335Regulator of chromosome condensation (RCC1) repeat
222212222232226Ribosomal protein S13/S18
11
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
11Photosystem II protein
122222242322127chorismate binding enzyme
33344332343334160s Acidic ribosomal protein
567378497844476Prenyltransferase and squalene oxidase repeat
677594589857585Protein kinase C terminal domain
11211111110Single-strand binding protein family
111111121211115S-adenosylmethionine synthetase, N-terminal domain
889108109891091110119Bromodomain
288981110109911911115Acyl-CoA dehydrogenase, C-terminal domain
16191519131612141517141712199Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
1111111111111Ribonuclease T2 family
657455764884776HSF-type DNA-binding
22322223222226SRP54-type protein, GTPase domain
11111112151218Urease alpha-subunit, N-terminal domain
710514101271220154103129Serine carboxypeptidase
11Ribosomal protein L20
877871288814789111Phosphatidylinositol 3- and 4-kinase
211112211223120Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
111112122113WHEP-TRS domain
322223222237234Inositol monophosphatase family
544976546655470Glutaredoxin
222222222523230Isocitrate lyase family
111115121211119Serine hydroxymethyltransferase
111112211124119Iron-containing alcohol dehydrogenase
122222222222225Ribosomal protein L10
436242333345345KOW motif
1111112211113Ribosomal protein L34
111111118Ribosomal protein L33
322314112433231RF-1 domain
212128Sodium:solute symporter family
111121112211116Imidazoleglycerol-phosphate dehydratase
111111111111113DNA polymerase family A
111112111111114IMP dehydrogenase / GMP reductase domain
11111211212115Glucose-6-phosphate dehydrogenase, NAD binding domain
5665465657613680Protein phosphatase 2C
242445232221134Nucleotidyl transferase
331112322122124Carbonic anhydrase
111111118Phosphoribulokinase / Uridine kinase family
565108658128413696Fatty acid desaturase
666556656966880MutS domain V
11111112211114Delta-aminolevulinic acid dehydratase
212111211224121Arginase family
6666612677866688MCM P-loop domain
221323222221226Squalene/phytoene synthase
8