PFAM Domains • Phlebia radiata Fr. (isolate 79, FBCC0043)
Annotations/GenomesBjead1_1Hydfim1Irplac1Phlbr1Phlcen1Phlgi1Phlrad1TotalAnnotation Description
PFAMs
8,5589,48310,4299,1608,6467,69511,04965,020
50384253474247319ATPase family associated with various cellular activities (AAA)
46445053524550340ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
15141416151415103Elongation factor Tu GTP binding domain
1213121311111284Helix-loop-helix DNA-binding domain
789884953Hsp20/alpha crystallin family
8101012147869Hsp70 protein
877877751KH domain
1113SH2 domain
26161326172215135SH3 domain
1010101311111075Actin
2255335249103Ankyrin repeat
778766748ADP-ribosylation factor family
55415656413949337Eukaryotic aspartyl protease
332333320Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
764544737Double-stranded RNA binding motif
221321221272EF hand
11111164Fe-4S binding domain
1111116Fibronectin type III domain
21111118Globin
2618211514179120Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1181011813970Homeodomain
11Laminin EGF domain
223222215lactate/malate dehydrogenase, NAD binding domain
555755537Myosin head (motor domain)
1891271572371301261391,105Cytochrome P450
2012072062012041602811,460Protein kinase domain
22101219122512112Pyridine nucleotide-disulphide oxidoreductase
24292925232626182Ras family
1111151211111384Response regulator receiver domain
12911152412395RNase H
70636970606973474RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
253471112Reverse transcriptase (RNA-dependent DNA polymerase)
211116Copper/zinc superoxide dismutase (SODC)
223222215Iron/manganese superoxide dismutases, alpha-hairpin domain
391168111159Subtilase family
30363934333041243Sugar (and other) transporter
12121113991076Thioredoxin
555555535Tubulin/FtsZ family, GTPase domain
109726von Willebrand factor type A domain
63222467175923275Zinc finger, C2H2 type
7311136786411247Zinc finger, C3HC4 type (RING finger)
2571018121122105Zinc knuckle
233222317Protein-tyrosine phosphatase
6974109101607870561short chain dehydrogenase
45447664334259363Zinc-binding dehydrogenase
445765536Thiolase, N-terminal domain
5321042632Beta-ketoacyl synthase, N-terminal domain
3113131132Fe-2S iron-sulfur cluster binding domain
11121118Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
888687954Glutamine amidotransferase class-I
9101291391072TCP-1/cpn60 chaperonin family
644524429Glutamine synthetase, catalytic domain
11121118Triosephosphate isomerase
12191515151016102E1-E2 ATPase
15142018151616114Core histone H2A/H2B/H3/H4
211213111Copper binding proteins, plastocyanin/azurin family
978778753Alpha amylase, catalytic domain
455655737Phorbol esters/diacylglycerol binding domain (C1 domain)
434456531Bacterial transferase hexapeptide (six repeats)
343443425tRNA synthetases class I (I, L, M and V)
1414121411111187Cyclin, N-terminal domain
1622352491616138Carboxylesterase family
433444426DNA polymerase family B
333313319ATP synthase subunit C
211111169101189Peroxidase
745963236Beta-lactamase
554445431C-5 cytosine-specific DNA methylase
26242627172622168Calcineurin-like phosphoesterase
12192415141222118Cellulase (glycosyl hydrolase family 5)
676766745tRNA synthetases class II (D, K and N)
37394238353739267Mitochondrial carrier protein
11recA bacterial DNA recombination protein
15151714201516112Aminotransferase class I and II
743737435Phosphoribosyl transferase domain
14141414151416101Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222212213Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11111117Chaperonin 10 Kd subunit
15181416201524122C2 domain
2089186191090PH domain
6888871156bZIP transcription factor
19172023201721137Aldehyde dehydrogenase family
69625871226195438Fungal Zn(2)-Cys(6) binuclear cluster domain
26222232202425171Cytochrome b5-like Heme/Steroid binding domain
646644333Oxidoreductase molybdopterin binding domain
1211121310141082Oxidoreductase NAD-binding domain
27233026242434188SNF2 family N-terminal domain
222122213Ribosomal protein S7p/S5e
21222423162224152Ubiquitin-conjugating enzyme
556565537Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222423823Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
2125Chitin recognition protein
633212219Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
87101166452Cupin
122229Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
343332321Catalase
1112117Disintegrin
934652736UDP-glucoronosyl and UDP-glucosyl transferase
556555536Aminotransferase class-III
222212213Ribosomal protein S19
11111117DNA gyrase B
333333321Thiamine pyrophosphate enzyme, central domain
334333322Lyase
222221213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
211111310Indole-3-glycerol phosphate synthase
21111219Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1011151012101078Kinesin motor domain
31313430222732207DnaJ domain
14151415141414100Proteasome subunit
1065637845Major intrinsic protein
31111119ATP synthase
222222214Glycosyl hydrolase family 1
111111283'5'-cyclic nucleotide phosphodiesterase
11121118Profilin
222111211Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
17191913131614111Ubiquitin family
565555536Cofilin/tropomyosin-type actin-binding protein
22322221514-3-3 protein
3328Alkaline phosphatase
11111128Zinc carboxypeptidase
64425579465261399Aldo/keto reductase family
127314312758Myb-like DNA-binding domain
558635739Forkhead domain
122121211Ribosomal protein L16p/L10e
222212112Ribosomal protein S14p/S29e
343543426FKBP-type peptidyl-prolyl cis-trans isomerase
11211118Glutathione peroxidase
2215
96612711758Flavodoxin
11111117Calreticulin family
6111913233Common central domain of tyrosinase
779868853Aminotransferase class-V
122742321Ribonucleotide reductase, small chain
49688566594476447DEAD/DEAH box helicase
86891091157578107659Helicase conserved C-terminal domain
11121118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
534345327Pyridoxal-dependent decarboxylase conserved domain
344353426Citrate synthase, C-terminal domain
555534532GHMP kinases N terminal domain
768866748Biotin carboxylase, N-terminal domain
11211118Tryptophan synthase alpha chain
8811899861Pyridoxal-phosphate dependent enzyme
16151415131616105NUDIX domain
455434429pfkB family carbohydrate kinase
6785410747Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
10810889962Histidine phosphatase superfamily (branch 1)
11121118Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
555424429Calponin homology (CH) domain
523525224Glutamine amidotransferases class-II
222312214Ribosomal protein S15
52367427Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
111321211Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222222315SRF-type transcription factor (DNA-binding and dimerisation domain)
98913781367GATA zinc finger
26882914259119Amino acid permease
666566641Prolyl oligopeptidase family
122111210Ribosomal protein L30p/L7e
1113141811111290Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
554565434Aconitase family (aconitate hydratase)
456864740Glycosyl hydrolase family 10
11111117Glycosyl hydrolases family 17
221222213Ribosomal protein S5, N-terminal domain
222222214Nucleoside diphosphate kinase
134121315Tetraspanin family
112Galactoside-binding lectin
223221315Ribosomal protein S10p/S20e
4118556443Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11113119SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
333633526Polyprenyl synthetase
222222214Hexokinase
8911101961477Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
423424322Rieske [2Fe-2S] domain
11114Phytochrome region
22Proton-conducting membrane transporter
777868952Biotin-requiring enzyme
11121118Phosphofructokinase
222322215Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
334433323FGGY family of carbohydrate kinases, N-terminal domain
888768752Enoyl-CoA hydratase/isomerase
223222215Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
687856646Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
19671712857126Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
121261215Phosphatidylinositol-specific phospholipase C, X domain
666667643D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333633324Malic enzyme, N-terminal domain
1123221126-phosphogluconate dehydrogenase, C-terminal domain
2311055733Multicopper oxidase
10911979964WW domain
22222212Ribosomal RNA adenine dimethylase
2121341451431271281531,042WD domain, G-beta repeat
452553529Heavy-metal-associated domain
333333321Adenylate kinase
223222215Phosphoglucomutase/phosphomannomutase, C-terminal domain
222122112Ribosomal protein S8
223222215Ribosomal protein S11
656366638LIM domain
465334328Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
222222214chorismate binding enzyme
33333232060s Acidic ribosomal protein
544444429Prenyltransferase and squalene oxidase repeat
766647743Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
1110101110101072Bromodomain
8891279962Acyl-CoA dehydrogenase, C-terminal domain
14151716151516108Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
233612320Ribonuclease T2 family
4549831346HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
33232428272228185Serine carboxypeptidase
8810888858Phosphatidylinositol 3- and 4-kinase
222232215Transketolase, thiamine diphosphate binding domain
314Glycosyl hydrolases family 11
1113WHEP-TRS domain
421332318Inositol monophosphatase family
344544428Glutaredoxin
1123424228Isocitrate lyase family
11122119Serine hydroxymethyltransferase
434433526Iron-containing alcohol dehydrogenase
123222214Ribosomal protein L10
534544530KOW motif
11114Ribosomal protein L34
112Ribosomal protein L33
343333423RF-1 domain
322323318Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11211118Glucose-6-phosphate dehydrogenase, NAD binding domain
887988957Protein phosphatase 2C
233333320Nucleotidyl transferase
525445429Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
151110208141391Fatty acid desaturase
667736742MutS domain V
11111117Delta-aminolevulinic acid dehydratase
543565735Arginase family
866666644MCM P-loop domain
122121211Squalene/phytoene synthase
20121114981387FHA domain
42344053424248301AMP-binding enzyme
1613161412131397G-protein alpha subunit
15121218171415103HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
8710898959His Kinase A (phospho-acceptor) domain
332343220Armadillo/beta-catenin-like repeat
27191531132516146Tetratricopeptide repeat
232723322Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10561078652BRCA1 C Terminus (BRCT) domain
654686540Glycosyl transferases group 1
432534324Glycosyl transferase family 2
11215SAM domain (Sterile alpha motif)
321223215linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
612112215ribonuclease
11111117Urease, gamma subunit
333333321CoA-ligase
610991371266Phosphopantetheine attachment site
223212214Formyl transferase
101113119101276Metallopeptidase family M24
154115214354Leucine Rich Repeat
509850114517190alpha/beta hydrolase fold
334333322RNA polymerase Rpb2, domain 6
656765742PB1 domain
232213215Staphylococcal nuclease homologue
111215119101280Rab-GTPase-TBC domain
322121112Tudor domain
222112212WH1 domain
533444427Zinc finger, ZZ type
11111117HRDC domain
977959955CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
111115Clp protease
344445428S1 RNA binding domain
111115HIUase/Transthyretin family
656656640AhpC/TSA family
445544430tRNA synthetases class I (W and Y)
156121521UvrD/REP helicase N-terminal domain
3995941150Rhodanese-like domain
222122213Universal stress protein family
3719233673619177Acetyltransferase (GNAT) family
11121118SecE/Sec61-gamma subunits of protein translocation complex
11211118C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
655966542tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
222322215Tetrapyrrole (Corrin/Porphyrin) Methylases
11121118Glycosyl transferase family, a/b domain
444442325Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555645535Fes/CIP4, and EFC/F-BAR homology domain
322324218IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
411424218Phospholipase D Active site motif
133141215Regulator of G protein signaling domain
444444630GTPase-activator protein for Ras-like GTPase
589566645RasGEF domain
678757545RasGEF N-terminal motif
1311141312131389RhoGAP domain
1313171314131699RhoGEF domain
5449146547SPRY domain
334333322RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
445434428Gelsolin repeat
855778646UBA/TS-N domain
15151619131820116PHD-finger
22212211GGL domain
444444428HECT-domain (ubiquitin-transferase)
1113219Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
1045849646Ribonuclease III domain
244242422Region in Clathrin and VPS
333333422RanBP1 domain
212222213PPIC-type PPIASE domain
11Phosphotyrosine interaction domain (PTB/PID)
21227Zn-finger in Ran binding protein and others
28101424112716130Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111111612B-box zinc finger
9591044849Poly(ADP-ribose) polymerase catalytic domain
213122213Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
18432471211310828533F-box domain
11111117Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
22222212Copper fist DNA binding domain
788857851CRAL/TRIO domain
52446131412346298BTB/POZ domain
6286949Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
333323320Voltage gated chloride channel
21151314141312102Caspase domain
15434210947GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11211118POLO box duplicated region
20202230312426173ABC transporter transmembrane region
7729198142Integrase core domain
555657639FAD binding domain
325Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11211219HAMP domain
222122213ribosomal L5P family C-terminus
866786647Insulinase (Peptidase family M16)
444544429Dehydrogenase E1 component
11111117Lumazine binding domain
667666643Elongation factor G C-terminus
444554430HMGL-like
444444529DnaJ central domain
211322314Starch binding domain
233232318Ribosomal protein L1p/L10e family
587554640Cation transporting ATPase, C-terminus
698775648Cation transporter/ATPase, N-terminus
111511661dUTPase
454585435Aconitase C-terminal domain
333333321Amino acid kinase family
21111129N-(5'phosphoribosyl)anthranilate (PRA) isomerase
332942629Acyl transferase domain
11111117Urease beta subunit
333333321Dihydrodipicolinate synthetase family
28151238122714146haloacid dehalogenase-like hydrolase
113112110Glycosyl hydrolases family 2
15118191011983Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11114Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
11111117Adenylosuccinate synthetase
11211118Asparaginase, N-terminal
334323321Peptidase S24-like
11212119Inorganic pyrophosphatase
5101341051461Glycosyl hydrolases family 16
233432320Glycosyl hydrolases family 15
88212420914104NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
455544431Glycosyl hydrolase family 20, catalytic domain
555554736HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
37292843192331210GMC oxidoreductase
223222316Asparagine synthase
32252627122632180Fungal cellulose binding domain
566665741Septin
11111117EF-1 guanine nucleotide exchange domain
11211118Homoserine dehydrogenase
5751066544Flavin-binding monooxygenase-like
333423321tRNA synthetases class I (E and Q), catalytic domain
11111139tRNA synthetases class I (R)
745956743XPG N-terminal domain
13107148101476Metallo-beta-lactamase superfamily
1113F5/8 type C domain
444474431Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
353333323RNB domain
233424321Dioxygenase
356334630CNH domain
222222214Diacylglycerol kinase catalytic domain
1411121411101284Dual specificity phosphatase, catalytic domain
11221119MyTH4 domain
454333325P21-Rho-binding domain
16141317131415102PX domain
331233217Ras association (RalGDS/AF-6) domain
444534529UBX domain
555856539VHS domain
1111116Phosphoinositide 3-kinase C2
222322215DAHP synthetase I family
544434428Carbon-nitrogen hydrolase
213N-acetyltransferase
111115Prephenate dehydratase
444635430Syntaxin
546755840Pumilio-family RNA binding repeat
677666745Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222233216Glycoprotease family
11111117Histidinol dehydrogenase
333343322impB/mucB/samB family
1113
11111117Ribosomal L15
133131315Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
11211118Ribosomal L29 protein
111216Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
534435630Glycosyl hydrolase family 7
232222215RNA pseudouridylate synthase
1077879755Histone deacetylase domain
211621316POT family
222222315PWWP domain
15192015151426124SET domain
544667840Isochorismatase family
222222214Permease family
11121118Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
7671488757XPG I-region
11111117Acetokinase family
11111117DNA photolyase
111115Cation-independent mannose-6-phosphate receptor repeat
1111116Cytosol aminopeptidase family, catalytic domain
11Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
233333320Acyl CoA binding protein
557555638Cullin family
11111117Elongation factor TS
333333321FAD binding domain
1315252712911112O-methyltransferase domain
332522421EamA-like transporter family