PFAM Domains • Neonectria radicicola MPI-CAGE-AT-0134 v1.0
Annotations/GenomesDaces1Ilyeu1Ilyrob1Ilysp1Neodi1Neora1TotalAnnotation Description
PFAMs
17,16918,23117,37915,04712,73519,497100,058
227 transmembrane receptor (rhodopsin family)
54527237 transmembrane receptor (Secretin family)
667372725468405ATPase family associated with various cellular activities (AAA)
989584876199524ABC transporter
46544831ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
15151514151589Elongation factor Tu GTP binding domain
172327161224119Helix-loop-helix DNA-binding domain
65662732Hsp20/alpha crystallin family
2017179141996Hsp70 protein
87798645KH domain
11SH2 domain
12131527131292SH3 domain
10111111101164Actin
7893962503393643Ankyrin repeat
997127650PAN domain
88888848ADP-ribosylation factor family
202325181923128Eukaryotic aspartyl protease
65854836Cyclic nucleotide-binding domain
11114Beta/Gamma crystallin
1111116Cytochrome c
11Double-stranded RNA binding motif
222201229EF hand
1124Fe-4S binding domain
1112117Fibronectin type III domain
32232214Globin
222122271620128Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
566125539Homeodomain
11Laminin N-terminal (Domain VI)
44342219lactate/malate dehydrogenase, NAD binding domain
65555632Myosin head (motor domain)
1792001711871102581,105Cytochrome P450
2012072131801741971,172Protein kinase domain
242727351821152Pyridine nucleotide-disulphide oxidoreductase
523336302534210Ras family
241818191521115Response regulator receiver domain
869234757RNase H
515555625153327RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
29635Reverse transcriptase (RNA-dependent DNA polymerase)
11125Serpin (serine protease inhibitor)
33323418Copper/zinc superoxide dismutase (SODC)
32122313Iron/manganese superoxide dismutases, alpha-hairpin domain
355450393048256Subtilase family
2222372332291432601,324Sugar (and other) transporter
13141414121481Thioredoxin
11114Thyroglobulin type-1 repeat
2343214Trypsin
48564835Tubulin/FtsZ family, GTPase domain
218213von Willebrand factor type A domain
4350391272248329Zinc finger, C2H2 type
674614991Zinc finger, C3HC4 type (RING finger)
6141814447Zinc knuckle
23222213Protein-tyrosine phosphatase
2613112903681743661,770short chain dehydrogenase
15516314518385168899Zinc-binding dehydrogenase
787861147Thiolase, N-terminal domain
212520261831141Beta-ketoacyl synthase, N-terminal domain
344624232Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
13191614121690Glutamine amidotransferase class-I
10101010111061TCP-1/cpn60 chaperonin family
89795745Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
313135282528178E1-E2 ATPase
1110101291365Core histone H2A/H2B/H3/H4
1087871050Alpha amylase, catalytic domain
22232213Phorbol esters/diacylglycerol binding domain (C1 domain)
7109118954Bacterial transferase hexapeptide (six repeats)
67645735tRNA synthetases class I (I, L, M and V)
111691181469Cyclin, N-terminal domain
535862633279347Carboxylesterase family
44444424DNA polymerase family B
76665636ATP synthase subunit C
65757737Peroxidase
294237412448221Beta-lactamase
22222212C-5 cytosine-specific DNA methylase
272425322728163Calcineurin-like phosphoesterase
191919151719108Cellulase (glycosyl hydrolase family 5)
78797947tRNA synthetases class II (D, K and N)
474848484045276Mitochondrial carrier protein
11recA bacterial DNA recombination protein
374541402943235Aminotransferase class I and II
455116536Phosphoribosyl transferase domain
11111011101467Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
11121216111577C2 domain
10991910966PH domain
363332311550197bZIP transcription factor
7582687841103447Aldehyde dehydrogenase family
6907616407562988423,987Fungal Zn(2)-Cys(6) binuclear cluster domain
414136413051240Cytochrome b5-like Heme/Steroid binding domain
54342624Oxidoreductase molybdopterin binding domain
303129351931175Oxidoreductase NAD-binding domain
293938362735204SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
212122231920126Ubiquitin-conjugating enzyme
10910891157Isocitrate/isopropylmalate dehydrogenase
22221211Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111217Dihydrofolate reductase
107766440Chitin recognition protein
55667534Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
66755635Cupin
33333318Annexin
23432620Eukaryotic-type carbonic anhydrase
22321212Chalcone and stilbene synthases, N-terminal domain
555645302-oxoacid dehydrogenases acyltransferase (catalytic domain)
6108115848Catalase
13241213Disintegrin
141717591678UDP-glucoronosyl and UDP-glucosyl transferase
202124221526128Aminotransferase class-III
22222212Ribosomal protein S19
2111218DNA gyrase B
1115151451474Thiamine pyrophosphate enzyme, central domain
76965942Lyase
32222213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22221211Sodium:neurotransmitter symporter family
112Ferritin-like domain
1111116Adenylate and Guanylate cyclase catalytic domain
1221129ATP synthase delta (OSCP) subunit
22222212Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
22221211Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
13121212141376Kinesin motor domain
282626272826161DnaJ domain
14141414141484Proteasome subunit
65454529Major intrinsic protein
1111116ATP synthase
898941048Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
22212211Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
12121116101071Ubiquitin family
56655633Cofilin/tropomyosin-type actin-binding protein
861453114714-3-3 protein
22232213Alkaline phosphatase
10109871155Zinc carboxypeptidase
586763654364360Aldo/keto reductase family
1177176957Myb-like DNA-binding domain
67464633Forkhead domain
65563934Glycosyl hydrolases family 32 N-terminal domain
22211210Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
44443423FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
11
16171617101591Flavodoxin
1111116Calreticulin family
162018181121104Common central domain of tyrosinase
10131411101573Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
485153494567313DEAD/DEAH box helicase
839390987694534Helicase conserved C-terminal domain
1111217EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1112218Ribosomal protein L5
97778846Pyridoxal-dependent decarboxylase conserved domain
44444424Citrate synthase, C-terminal domain
57665635GHMP kinases N terminal domain
99888951Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
15171616152099Pyridoxal-phosphate dependent enzyme
202321261823131NUDIX domain
66687841pfkB family carbohydrate kinase
17161716121795Glycosyl hydrolases family 28
977112743Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
171718171615100Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
33212516Lipoxygenase
46544831ATP synthase alpha/beta chain, C terminal domain
55554529Calponin homology (CH) domain
23253217Glutamine amidotransferases class-II
22222212Ribosomal protein S15
22231515Thaumatin family
22222212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
18108871061GATA zinc finger
5756481183664379Amino acid permease
101111571357Prolyl oligopeptidase family
22222212Ribosomal protein L30p/L7e
1010101191060Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
58886843Aconitase family (aconitate hydratase)
47873736Glycosyl hydrolase family 10
33343420Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
11114Tetraspanin family
22212211Ribosomal protein S10p/S20e
85746838Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
35444424Polyprenyl synthetase
55555530Hexokinase
181918141321103Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
1012101481569Rieske [2Fe-2S] domain
111115Phytochrome region
12131214101374Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
14322315Hydroxymethylglutaryl-coenzyme A reductase
44443423FGGY family of carbohydrate kinases, N-terminal domain
111115Sodium:dicarboxylate symporter family
363331321840190Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
87676741Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
202015241322114Chromo (CHRromatin Organisation MOdifier) domain
44464830Phosphatidylinositol-specific phospholipase C, Y domain
787971048Phosphatidylinositol-specific phospholipase C, X domain
181818211320108D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222212Malic enzyme, N-terminal domain
11114PEP-utilising enzyme, mobile domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
1718151781792Multicopper oxidase
11121416111377WW domain
22212211Ribosomal RNA adenine dimethylase
111115Yeast PIR protein repeat
137128134139108145791WD domain, G-beta repeat
681195746Heavy-metal-associated domain
45544527Adenylate kinase
22212211Phosphoglucomutase/phosphomannomutase, C-terminal domain
22212211Ribosomal protein S8
22212211Ribosomal protein S11
44444525LIM domain
3323112Matrixin
44424422Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22223213chorismate binding enzyme
3433331960s Acidic ribosomal protein
54443424Prenyltransferase and squalene oxidase repeat
45575430Protein kinase C terminal domain
1111116Single-strand binding protein family
1111127S-adenosylmethionine synthetase, N-terminal domain
1210111191568Bromodomain
202020221524121Acyl-CoA dehydrogenase, C-terminal domain
13131314131379Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
1111116Ribonuclease T2 family
35343624HSF-type DNA-binding
22223213SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
15191717101795Serine carboxypeptidase
89888950Phosphatidylinositol 3- and 4-kinase
43463424Transketolase, thiamine diphosphate binding domain
32222415Glycosyl hydrolases family 11
67775638Inositol monophosphatase family
44444424Glutaredoxin
454103430Isocitrate lyase family
33333318Serine hydroxymethyltransferase
1166651044Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
22222212KOW motif
1111116Ribosomal protein L34
1113Ribosomal protein L33
33333318RF-1 domain
107788747Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
77767640Protein phosphatase 2C
22222212Nucleotidyl transferase
109854945Carbonic anhydrase
23212313Phosphoribulokinase / Uridine kinase family
12108891461Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
69877946Arginase family
66666636MCM P-loop domain
23322214Squalene/phytoene synthase
11114Bacterial extracellular solute-binding proteins, family 3
12131315121075FHA domain
801069610761121571AMP-binding enzyme
45553527G-protein alpha subunit
97889950HMG (high mobility group) box
18141416111790His Kinase A (phospho-acceptor) domain
22232213Armadillo/beta-catenin-like repeat
191914391622129Tetratricopeptide repeat
33343319Ion transport protein
2111117DNA gyrase/topoisomerase IV, subunit A
978147752BRCA1 C Terminus (BRCT) domain
111011118960Glycosyl transferases group 1
22252215Glycosyl transferase family 2
22221211SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
141915181223101Pectate lyase
13321313ribonuclease
1111116Urease, gamma subunit
55554731CoA-ligase
334536413150236Phosphopantetheine attachment site
45553527Formyl transferase
1211119101265Metallopeptidase family M24
22314223Leucine Rich Repeat
132218981017178alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
44444424PB1 domain
22222414Staphylococcal nuclease homologue
15121210121374Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
54454628Zinc finger, ZZ type
1111116HRDC domain
76786640CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
54445527S1 RNA binding domain
1111116HIUase/Transthyretin family
35444424AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
1111217UvrD/REP helicase N-terminal domain
1315156101372Rhodanese-like domain
22222212Universal stress protein family
515150684258320Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
798108850tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
32222213Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
11PDZ domain
12181421112197Class II Aldolase and Adducin N-terminal domain
893761144Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555530Fes/CIP4, and EFC/F-BAR homology domain
22242214IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
33363321Phospholipase D Active site motif
161611472377Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
55654429RasGEF domain
55454427RasGEF N-terminal motif
97888848RhoGAP domain
86676942RhoGEF domain
58643834SPRY domain
34443422RNA polymerase Rpb1, domain 2
23332215Guanylate kinase
44444424Gelsolin repeat
45595533UBA/TS-N domain
13121116121276PHD-finger
1112117GGL domain
66665635HECT-domain (ubiquitin-transferase)
1111116Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
33343319Ribonuclease III domain
44434524Region in Clathrin and VPS
32333317RanBP1 domain
1112117PPIC-type PPIASE domain
22331213Zn-finger in Ran binding protein and others
1013121981476Zinc finger C-x8-C-x5-C-x3-H type (and similar)
22432417Poly(ADP-ribose) polymerase catalytic domain
1111116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2022201101624212F-box domain
1111116Elongation factor 1 gamma, conserved domain
9108115851Calpain family cysteine protease
33232316Copper fist DNA binding domain
76666637CRAL/TRIO domain
172016181825114BTB/POZ domain
1111116Inhibitor of Apoptosis domain
43433320Voltage gated chloride channel
10109941052Caspase domain
10641310851GDSL-like Lipase/Acylhydrolase
2111117Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
463836343043227ABC transporter transmembrane region
10212Integrase core domain
19161516101692FAD binding domain
171816191520105Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
31221312HAMP domain
22222212ribosomal L5P family C-terminus
88785844Insulinase (Peptidase family M16)
55664531Dehydrogenase E1 component
1111116Lumazine binding domain
66666636Elongation factor G C-terminus
87777743HMGL-like
44444424DnaJ central domain
33331316Starch binding domain
33323317Ribosomal protein L1p/L10e family
17181717121798Cation transporting ATPase, C-terminus
14151419131590Cation transporter/ATPase, N-terminus
1111116dUTPase
56796841Aconitase C-terminal domain
34444524Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
202419241830135Acyl transferase domain
1111116Urease beta subunit
151918191320104Dihydrodipicolinate synthetase family
282729481928179haloacid dehalogenase-like hydrolase
97128101157Glycosyl hydrolases family 2
403130282033182Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
111115Translation initiation factor IF-3, C-terminal domain
11114Acylphosphatase
22322314Adenylosuccinate synthetase
8148155757Asparaginase, N-terminal
33232215Peptidase S24-like
22222212Inorganic pyrophosphatase
353531242538188Glycosyl hydrolases family 16
53332319Glycosyl hydrolases family 15
272322302130153NADH:flavin oxidoreductase / NADH oxidase family
222332143-hydroxyacyl-CoA dehydrogenase, C-terminal domain
23222314Glycosyl hydrolase family 20, catalytic domain
65545530HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
414445352743235GMC oxidoreductase
23333317Asparagine synthase
20161514131896Fungal cellulose binding domain
67667941Septin
1111116EF-1 guanine nucleotide exchange domain
13111310Homoserine dehydrogenase
1914167151687Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
34542523tRNA synthetases class I (R)
44444424XPG N-terminal domain
283323421035171Metallo-beta-lactamase superfamily
2125F5/8 type C domain
22223213Choline/Carnitine o-acyltransferase
44413420Putative esterase
1111116Ferrochelatase
22223314Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
22122312Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
1617121682089Dioxygenase
43323318CNH domain
32212313Diacylglycerol kinase catalytic domain
89998952Dual specificity phosphatase, catalytic domain
22333316P21-Rho-binding domain
13131312131377PX domain
32232214Ras association (RalGDS/AF-6) domain
34453423UBX domain
55544528VHS domain
1111116Phosphoinositide 3-kinase C2
22223213DAHP synthetase I family
202524251926139Carbon-nitrogen hydrolase
55554731N-acetyltransferase
1111116Prephenate dehydratase
44453424Syntaxin
1113Pentapeptide repeats (8 copies)
44454425Pumilio-family RNA binding repeat
77767741Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
23242215Histidinol dehydrogenase
44444424impB/mucB/samB family
11
1111116Ribosomal L15
33313316Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
111115Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
43333319Glycosyl hydrolase family 7
810841242Ring hydroxylating alpha subunit (catalytic domain)
1111116RNA pseudouridylate synthase
44444424Histone deacetylase domain
44443524POT family
1111116PWWP domain
152521201919119SET domain
9141313121273Isochorismatase family
55564530Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
11Peptidase family C4
44444424XPG I-region
1111116Acetokinase family
33333318DNA photolyase
4534521Nitroreductase family
202123211630131Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
44444424Cullin family
11261839922125FAD binding domain
1012111291468O-methyltransferase domain
43343320EamA-like transporter family
11
89898850ThiF family
1111116Ribosomal family S4e
18211831721116Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
67777741Ammonium Transporter Family
871177949Sulfate permease family
1111116MATH domain
44463627Dehydratase family
44464628Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
33322316GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44444424Adaptor complexes medium subunit family
56776637Exonuclease
22223213Dipeptidyl peptidase IV (DPP IV) N-terminal region
20252911130116NB-ARC domain
11114Lamin Tail Domain
405048502755270Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
111115Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
2111117FAD binding domain in molybdopterin dehydrogenase
11Peptidase S7, Flavivirus NS3 serine protease
1111116Glycosyl transferase family 4
22222212HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
45544527Synaptobrevin
13331213GMP synthase C terminal domain
42421518Phage lysozyme
79685641Adenosine/AMP deaminase
912111481266Oxidoreductase FAD-binding domain
77774739Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
24543422UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
123PAS fold
22222212Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
149887854Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
56575533Initiation factor 2 subunit family
22222212Electron transfer flavoprotein domain
1111116Uricase
1