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PFAM Domains • Kuraishia capsulata CBS 1993
Annotations/GenomesCanca1Dekbr2Hanpo2Kurca1Lipst1_1Nadfu1Yarli1TotalAnnotation Description
PFAMs
4,4744,9105,0066,6556,3675,3245,73738,473
30323233353733232ATPase family associated with various cellular activities (AAA)
25242229562632214ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
1214141314141495Elongation factor Tu GTP binding domain
7108998960Helix-loop-helix DNA-binding domain
212244217Hsp20/alpha crystallin family
79987101161Hsp70 protein
5786991155KH domain
1111116SH2 domain
16171715212120127SH3 domain
810101110111070Actin
101512416152092Ankyrin repeat
766877748ADP-ribosylation factor family
4557863772Eukaryotic aspartyl protease
443344426Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
12111219Cytochrome c
112132212Double-stranded RNA binding motif
14111415151786EF hand
13111294Fe-4S binding domain
112127Fibronectin type III domain
31122312Globin
2665741040Glutathione S-transferase, C-terminal domain
12111219Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
235266529Homeodomain
233322217lactate/malate dehydrogenase, NAD binding domain
323355526Myosin head (motor domain)
54542141760Cytochrome P450
79949798869883635Protein kinase domain
551011109555Pyridine nucleotide-disulphide oxidoreductase
19182222232424152Ras family
435679741Response regulator receiver domain
32111219RNase H
40535248625855368RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
2020Reverse transcriptase (RNA-dependent DNA polymerase)
122211211Copper/zinc superoxide dismutase (SODC)
11111128Iron/manganese superoxide dismutases, alpha-hairpin domain
6443551643Subtilase family
102832551031426268Sugar (and other) transporter
798889958Thioredoxin
112127Trypsin
533354427Tubulin/FtsZ family, GTPase domain
11von Willebrand factor type A domain
30333419414134232Zinc finger, C2H2 type
3028262343136187Zinc finger, C3HC4 type (RING finger)
382393634Zinc knuckle
222222214Protein-tyrosine phosphatase
20152530802029219short chain dehydrogenase
23161918401520151Zinc-binding dehydrogenase
322253320Thiolase, N-terminal domain
222252217Beta-ketoacyl synthase, N-terminal domain
3332333202Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
33Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
777788852Glutamine amidotransferase class-I
9910109101067TCP-1/cpn60 chaperonin family
211112210Glutamine synthetase, catalytic domain
111131210Triosephosphate isomerase
898111711973E1-E2 ATPase
510987131062Core histone H2A/H2B/H3/H4
1621194134Alpha amylase, catalytic domain
21112119Phorbol esters/diacylglycerol binding domain (C1 domain)
456666639Bacterial transferase hexapeptide (six repeats)
424534325tRNA synthetases class I (I, L, M and V)
6101010710861Cyclin, N-terminal domain
11473420Carboxylesterase family
444444428DNA polymerase family B
333343322ATP synthase subunit C
122222314Peroxidase
3339Beta-lactamase
11NADH dehydrogenase
15202117291832152Calcineurin-like phosphoesterase
111533317Cellulase (glycosyl hydrolase family 5)
666666642tRNA synthetases class II (D, K and N)
33313132353839239Mitochondrial carrier protein
1112111611111486Aminotransferase class I and II
6886810854Phosphoribosyl transferase domain
4108109121063Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
122223214Ribosomal protein S4/S9 N-terminal domain
222223215Ribosomal protein S12/S23
12227Bacterial regulatory helix-turn-helix proteins, AraC family
11211219Chaperonin 10 Kd subunit
6711989858C2 domain
1412131214151898PH domain
336678740bZIP transcription factor
101011141191378Aldehyde dehydrogenase family
436273941253951487Fungal Zn(2)-Cys(6) binuclear cluster domain
12151412191315100Cytochrome b5-like Heme/Steroid binding domain
1214Oxidoreductase molybdopterin binding domain
799787754Oxidoreductase NAD-binding domain
17191619191819127SNF2 family N-terminal domain
232223216Ribosomal protein S7p/S5e
15141413211516108Ubiquitin-conjugating enzyme
566566539Isocitrate/isopropylmalate dehydrogenase
222223215Ribosomal Proteins L2, RNA binding domain
11111218Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
22Chitin recognition protein
42223215Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
11Cupin
1113Annexin
11Trypsin and protease inhibitor
3222233172-oxoacid dehydrogenases acyltransferase (catalytic domain)
211162316Catalase
1113Disintegrin
1113UDP-glucoronosyl and UDP-glucosyl transferase
358848642Aminotransferase class-III
221223214Ribosomal protein S19
11111117DNA gyrase B
545554432Thiamine pyrophosphate enzyme, central domain
333333321Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
21111219Adenylate and Guanylate cyclase catalytic domain
11111218ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11111218Pyruvate kinase, barrel domain
8486610951Kinesin motor domain
21232323242531170DnaJ domain
1414131414141497Proteasome subunit
111121310Major intrinsic protein
11111117ATP synthase
33Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
112212211Ribosomal protein L22p/L17e
122222213Ribosomal protein L14p/L23e
87771111960Ubiquitin family
244442323Cofilin/tropomyosin-type actin-binding protein
21112221114-3-3 protein
222131112Alkaline phosphatase
1111116Zinc carboxypeptidase
613162341817124Aldo/keto reductase family
111414913141489Myb-like DNA-binding domain
332333320Forkhead domain
18110Glycosyl hydrolases family 32 N-terminal domain
112116Ribosomal protein L16p/L10e
222223114Ribosomal protein S14p/S29e
323333320FKBP-type peptidyl-prolyl cis-trans isomerase
11111218Glutathione peroxidase
2112118
67741071051Flavodoxin
11111218Calreticulin family
655664638Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
30323139363634238DEAD/DEAH box helicase
53565958705962417Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
121212110Ribosomal protein L5
333363324Pyridoxal-dependent decarboxylase conserved domain
211133213Citrate synthase, C-terminal domain
543475533GHMP kinases N terminal domain
765565741Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
756788950Pyridoxal-phosphate dependent enzyme
9767910957NUDIX domain
434434426pfkB family carbohydrate kinase
222222214Ribosomal protein L3
222223215Ribosomal protein L11, RNA binding domain
1012121311131081Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
454345530Calponin homology (CH) domain
554266533Glutamine amidotransferases class-II
222222214Ribosomal protein S15
11111117Fructose-1-6-bisphosphatase, N-terminal domain
122211211Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222122213SRF-type transcription factor (DNA-binding and dimerisation domain)
5889710754GATA zinc finger
1425291392331144Amino acid permease
222322114Prolyl oligopeptidase family
213314216Ribosomal protein L30p/L7e
344598437Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444428Aconitase family (aconitate hydratase)
243433423Glycosyl hydrolases family 17
122222213Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
122212111Ribosomal protein S10p/S20e
512663427Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
121212211SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
243323219Ribosomal protein L6
333333321Polyprenyl synthetase
343424323Hexokinase
333434424Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
124221113Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
977677952Biotin-requiring enzyme
122213112Phosphofructokinase
222223215Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
344433324FGGY family of carbohydrate kinases, N-terminal domain
7223441032Enoyl-CoA hydratase/isomerase
222223215Ribosomal protein S9/S16
222332216Transcription factor TFIIB repeat
666746641Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
122242215Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
12121119Phosphatidylinositol-specific phospholipase C, X domain
5456841446D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11111117Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
132292322Multicopper oxidase
3467810644WW domain
211222212Ribosomal RNA adenine dimethylase
1443820Yeast PIR protein repeat
8491868610010494645WD domain, G-beta repeat
343453426Heavy-metal-associated domain
334333322Adenylate kinase
223322317Phosphoglucomutase/phosphomannomutase, C-terminal domain
233312216Ribosomal protein S8
11111218Ribosomal protein S11
333333422LIM domain
211212110Regulator of chromosome condensation (RCC1) repeat
222214215Ribosomal protein S13/S18
222222214chorismate binding enzyme
34553542960s Acidic ribosomal protein
444344427Prenyltransferase and squalene oxidase repeat
566468742Protein kinase C terminal domain
11111117Single-strand binding protein family
11111218S-adenosylmethionine synthetase, N-terminal domain
8998711961Bromodomain
71651130Acyl-CoA dehydrogenase, C-terminal domain
1215131417131498Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
11111128Ribonuclease T2 family
344434325HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
2233231025Serine carboxypeptidase
888787854Phosphatidylinositol 3- and 4-kinase
113332114Transketolase, thiamine diphosphate binding domain
211221211Inositol monophosphatase family
255447431Glutaredoxin
213122213Isocitrate lyase family
222212213Serine hydroxymethyltransferase
11114Iron-containing alcohol dehydrogenase
222323216Ribosomal protein L10
443147326KOW motif
1111116Ribosomal protein L34
23222213RF-1 domain
235521523Sodium:solute symporter family
12111118Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11121118IMP dehydrogenase / GMP reductase domain
11111218Glucose-6-phosphate dehydrogenase, NAD binding domain
666658643Protein phosphatase 2C
323333320Nucleotidyl transferase
11112118Carbonic anhydrase
11121219Phosphoribulokinase / Uridine kinase family
456565435Fatty acid desaturase
454464431MutS domain V
11111117Delta-aminolevulinic acid dehydratase
555311222Arginase family
666666642MCM P-loop domain
11122119Squalene/phytoene synthase
977998756FHA domain
1667812111878AMP-binding enzyme
322222215G-protein alpha subunit
556466840HMG (high mobility group) box
212357424His Kinase A (phospho-acceptor) domain
222233216Armadillo/beta-catenin-like repeat
13131613202222119Tetratricopeptide repeat
322112112Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
11995991062BRCA1 C Terminus (BRCT) domain
444364530Glycosyl transferases group 1
222232215Glycosyl transferase family 2
1111127SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
111115Ribosomal protein L7/L12 C-terminal domain
322233318CoA-ligase
333332320Phosphopantetheine attachment site
222222214Formyl transferase
968988755Metallopeptidase family M24
111011312161073Leucine Rich Repeat
1316185201117100alpha/beta hydrolase fold
333334322RNA polymerase Rpb2, domain 6
322322317PB1 domain
222222214Staphylococcal nuclease homologue
767910101160Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
222341317Zinc finger, ZZ type
11111117HRDC domain
9677911958CBS domain
122222213Ribosomal protein L13
212223113Ribosomal protein L4/L1 family
11114Clp protease
433444426S1 RNA binding domain
11111117HIUase/Transthyretin family
444455430AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
23212212UvrD/REP helicase N-terminal domain
555645636Rhodanese-like domain
212222213Universal stress protein family
119109251826108Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
422222216AIR synthase related protein, N-terminal domain
888788855tRNA synthetase class II core domain (G, H, P, S and T)
121212211SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
12115PDZ domain
123313215Class II Aldolase and Adducin N-terminal domain
222334420Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
332335524Fes/CIP4, and EFC/F-BAR homology domain
23233417IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
222122213Phospholipase D Active site motif
115119Regulator of G protein signaling domain
332335423GTPase-activator protein for Ras-like GTPase
244444426RasGEF domain
244344425RasGEF N-terminal motif
57778111055RhoGAP domain
422352523RhoGEF domain
444235426SPRY domain
333333321RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
134333421Gelsolin repeat
566666944UBA/TS-N domain
1112101114141486PHD-finger
111115GGL domain
555565637HECT-domain (ubiquitin-transferase)
112Helix-hairpin-helix motif
11111128MSP (Major sperm protein) domain
132131213Ribonuclease III domain
223322216Region in Clathrin and VPS
233323319RanBP1 domain
1112117PPIC-type PPIASE domain
11112118Zn-finger in Ran binding protein and others
12810714141075Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1113B-box zinc finger
11Poly(ADP-ribose) polymerase catalytic domain
112Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
131573391543135F-box domain
111122210Elongation factor 1 gamma, conserved domain
111115Calpain family cysteine protease
222213214Copper fist DNA binding domain
365554735CRAL/TRIO domain
214521529BTB/POZ domain
22Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
322333319Voltage gated chloride channel
1121218Caspase domain
13251214GDSL-like Lipase/Acylhydrolase
11111229Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
527Seripauperin and TIP1 family
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
139911331216103ABC transporter transmembrane region
21012Integrase core domain
444353326FAD binding domain
11114Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111319HAMP domain
222223215ribosomal L5P family C-terminus
678857748Insulinase (Peptidase family M16)
322223317Dehydrogenase E1 component
11111117Lumazine binding domain
676667745Elongation factor G C-terminus
455545432HMGL-like
455444430DnaJ central domain
222412215Ribosomal protein L1p/L10e family
333284427Cation transporting ATPase, C-terminus
4443106536Cation transporter/ATPase, N-terminus
11111117dUTPase
444444428Aconitase C-terminal domain
333334322Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
111241212Acyl transferase domain
1444114Dihydrodipicolinate synthetase family
1917218321921137haloacid dehalogenase-like hydrolase
2125Glycosyl hydrolases family 2
222153318Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11Acylphosphatase
11111117Adenylosuccinate synthetase
11Asparaginase, N-terminal
11Interferon gamma
222233317Peptidase S24-like
122112211Inorganic pyrophosphatase
511242318Glycosyl hydrolases family 16
11111117Glycosyl hydrolases family 15
234532625NADH:flavin oxidoreductase / NADH oxidase family
122163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
11Glycosyl hydrolase family 20, catalytic domain
233321317HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
11316GMC oxidoreductase
222222214Asparagine synthase
1214Fungal cellulose binding domain
477744740Septin
1111217EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
325323119Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
331533422XPG N-terminal domain
422292324Metallo-beta-lactamase superfamily
11114F5/8 type C domain
233322217Choline/Carnitine o-acyltransferase
141111110Putative esterase
11111117Ferrochelatase
233324320Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333434424RNB domain
311422215CNH domain
212211211Diacylglycerol kinase catalytic domain
565678643Dual specificity phosphatase, catalytic domain
221221212P21-Rho-binding domain
1011111311131382PX domain
222223316Ras association (RalGDS/AF-6) domain
556543634UBX domain
444355429VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
446984439Carbon-nitrogen hydrolase
11111117Prephenate dehydratase
444144627Syntaxin
466447536Pumilio-family RNA binding repeat
677676645Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222223215tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
322242217impB/mucB/samB family
1111116
1111217Ribosomal L15
1131219Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
111216Ribosomal L39 protein
11112219Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
411111110Translationally controlled tumour protein
44Ring hydroxylating alpha subunit (catalytic domain)
133123215RNA pseudouridylate synthase
434555531Histone deacetylase domain
121212716POT family
11121118PWWP domain
97878111060SET domain
211181115Isochorismatase family
113211211Permease family
11111218Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
343543426XPG I-region
11Acetokinase family
11DNA photolyase
112Cation-independent mannose-6-phosphate receptor repeat
11Zinc dependent phospholipase C
3115Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
222221213Acyl CoA binding protein
444444428Cullin family
322273120FAD binding domain
11O-methyltransferase domain
354334426EamA-like transporter family
22222212
888778854ThiF family
11111117Ribosomal family S4e
222271218Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
224352624Ammonium Transporter Family
333333321Sulfate permease family
11114MATH domain
31111119Dehydratase family
113422114Transaldolase/Fructose-6-phosphate aldolase
11114Mechanosensitive ion channel
11121118GTP cyclohydrolase II
111111173,4-dihydroxy-2-butanone 4-phosphate synthase
344545530Adaptor complexes medium subunit family
545566637Exonuclease
122212111Dipeptidyl peptidase IV (DPP IV) N-terminal region
133961629Glycosyl hydrolase family 3 N terminal domain
1111217Ribosomal protein L44
123Sodium:sulfate symporter transmembrane region
11111117DNA-dependent RNA polymerase
1113FAD binding domain in molybdopterin dehydrogenase
11111117Glycosyl transferase family 4
11112118HCO3- transporter family
2