Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
PFAM Domains • Xylaria scruposa CBS 123580 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Entma1HypEC38_3Xylhyp1Xylscr1TotalAnnotation Description
PFAMs
10,48610,3948,53210,2119,14911,45912,46572,696
1127 transmembrane receptor (rhodopsin family)
112267 transmembrane receptor (Secretin family)
88545350586276441ATPase family associated with various cellular activities (AAA)
49384338474543303ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151415141515102Elongation factor Tu GTP binding domain
138101110111174Helix-loop-helix DNA-binding domain
222121212Hsp20/alpha crystallin family
8107117151472Hsp70 protein
878797753KH domain
1113SH2 domain
27122612251113126SH3 domain
9101099101067Actin
172256616893259459Ankyrin repeat
213121111PAN domain
788787853ADP-ribosylation factor family
22221722162124144Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11Double-stranded RNA binding motif
172193182364EF hand
11134Fe-4S binding domain
212121110Fibronectin type III domain
222232215Globin
2081515191116104Glutathione S-transferase, C-terminal domain
21111219Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
858585544Homeodomain
322222215lactate/malate dehydrogenase, NAD binding domain
444454429Myosin head (motor domain)
2381221181291601942051,166Cytochrome P450
1811151131331251741871,028Protein kinase domain
19131714141816111Pyridine nucleotide-disulphide oxidoreductase
28282527263027191Ras family
1311131012141588Response regulator receiver domain
1252647642RNase H
60515957604953389RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
232323318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17252018212127149Subtilase family
59785953695968445Sugar (and other) transporter
1312111213121285Thioredoxin
4215214Trypsin
564455534Tubulin/FtsZ family, GTPase domain
514414von Willebrand factor type A domain
91236325702935336Zinc finger, C2H2 type
5474374556167Zinc finger, C3HC4 type (RING finger)
10311163236Zinc knuckle
222222214Protein-tyrosine phosphatase
2001151471171701611721,082short chain dehydrogenase
99536352717585498Zinc-binding dehydrogenase
665656640Thiolase, N-terminal domain
69342833375762320Beta-ketoacyl synthase, N-terminal domain
7485745402Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111128Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
119811810966Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
444353326Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
15211819182019130E1-E2 ATPase
1288888860Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
674445434Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
777878751Bacterial transferase hexapeptide (six repeats)
453635733tRNA synthetases class I (I, L, M and V)
1076868853Cyclin, N-terminal domain
27181914182216134Carboxylesterase family
444544429DNA polymerase family B
645455635ATP synthase subunit C
555666740Peroxidase
187101513181596Beta-lactamase
443334425C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
28232624252725178Calcineurin-like phosphoesterase
10151217121719102Cellulase (glycosyl hydrolase family 5)
878787853tRNA synthetases class II (D, K and N)
38373837393938266Mitochondrial carrier protein
11114recA bacterial DNA recombination protein
19181621152121131Aminotransferase class I and II
868574341Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1124Ribosome inactivating protein
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
131112101210876C2 domain
188198189888PH domain
1117101510171999bZIP transcription factor
20201822182322143Aldehyde dehydrogenase family
2321561701501961902271,321Fungal Zn(2)-Cys(6) binuclear cluster domain
25242323242526170Cytochrome b5-like Heme/Steroid binding domain
424333322Oxidoreductase molybdopterin binding domain
17121814181716112Oxidoreductase NAD-binding domain
33272626313136210SNF2 family N-terminal domain
222212213Ribosomal protein S7p/S5e
23212122212222152Ubiquitin-conjugating enzyme
786767748Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
546153327Chitin recognition protein
223233318Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
444343426Cupin
223131113Annexin
11111117Eukaryotic-type carbonic anhydrase
211212211Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
547385436Catalase
11111117Disintegrin
14213617UDP-glucoronosyl and UDP-glucosyl transferase
9117687856Aminotransferase class-III
232232216Ribosomal protein S19
11111117DNA gyrase B
744454533Thiamine pyrophosphate enzyme, central domain
453333324Lyase
222322215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
21221412Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1212121112131183Kinesin motor domain
31362628303034215DnaJ domain
1413141414141497Proteasome subunit
23422114Major intrinsic protein
11111117ATP synthase
111122210Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
121212211Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
11109101091069Ubiquitin family
555555434Cofilin/tropomyosin-type actin-binding protein
23232331814-3-3 protein
525252223Alkaline phosphatase
655656639Zinc carboxypeptidase
39323427363339240Aldo/keto reductase family
157127176872Myb-like DNA-binding domain
844443431Forkhead domain
2211118Glycosyl hydrolases family 32 N-terminal domain
121212211Ribosomal protein L16p/L10e
322222215Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
3227
857677747Flavodoxin
11111117Calreticulin family
1491298141480Common central domain of tyrosinase
119111210111377Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41454544424744308DEAD/DEAH box helicase
93757870808082558Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
776768849Pyridoxal-dependent decarboxylase conserved domain
853436635Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
867666746Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011111112111379Pyridoxal-phosphate dependent enzyme
24181917201618132NUDIX domain
766868647pfkB family carbohydrate kinase
763737942Glycosyl hydrolases family 28
3227Luciferase-like monooxygenase
222222214Ribosomal protein L3
222122112Ribosomal protein L11, RNA binding domain
18191617181617121Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
4413416Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
554555534Calponin homology (CH) domain
524362224Glutamine amidotransferases class-II
221222213Ribosomal protein S15
21111118Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
221222213Ribosomal protein S2
312222214SRF-type transcription factor (DNA-binding and dimerisation domain)
666766643GATA zinc finger
34163312371512159Amino acid permease
665657742Prolyl oligopeptidase family
222122213Ribosomal protein L30p/L7e
6710695649Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
645445432Aconitase family (aconitate hydratase)
323232217Glycosyl hydrolase family 10
424142219Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11215Tetraspanin family
121212211Ribosomal protein S10p/S20e
333423321Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1033534432Polyprenyl synthetase
445355430Hexokinase
11158129171688Dynamin family
31111119Transcription factor TFIID (or TATA-binding protein, TBP)
776765644Rieske [2Fe-2S] domain
1111116Phytochrome region
314Proton-conducting membrane transporter
989887958Biotin-requiring enzyme
11111117Phosphofructokinase
122221111Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333332320FGGY family of carbohydrate kinases, N-terminal domain
16881110121479Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
8987991060Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
1269576651Chromo (CHRromatin Organisation MOdifier) domain
444444428Phosphatidylinositol-specific phospholipase C, Y domain
555656638Phosphatidylinositol-specific phospholipase C, X domain
8129679960D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2221212126-phosphogluconate dehydrogenase, C-terminal domain
14148129131686Multicopper oxidase
11111091091070WW domain
121122211Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
122106103106108108117770WD domain, G-beta repeat
454464431Heavy-metal-associated domain
573636535Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121223314Ribosomal protein S8
222222214Ribosomal protein S11
444444428LIM domain
1124Matrixin
242645427Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322423218chorismate binding enzyme
33333332160s Acidic ribosomal protein
444445429Prenyltransferase and squalene oxidase repeat
646565436Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
988988757Bromodomain
1296119131171Acyl-CoA dehydrogenase, C-terminal domain
1413141314131394Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
422425524Ribonuclease T2 family
333332320HSF-type DNA-binding
222323216SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1079887958Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
121212211Transketolase, thiamine diphosphate binding domain
1023325328Glycosyl hydrolases family 11
433434425Inositol monophosphatase family
444444428Glutaredoxin
525242222Isocitrate lyase family
222222214Serine hydroxymethyltransferase
224143319Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
424443526KOW motif
111115Ribosomal protein L34
11114Ribosomal protein L33
333333321RF-1 domain
223242217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766667644Protein phosphatase 2C
222222214Nucleotidyl transferase
633334527Carbonic anhydrase
111212210Phosphoribulokinase / Uridine kinase family
785557845Fatty acid desaturase
666666642MutS domain V
11121129Delta-aminolevulinic acid dehydratase
544344428Arginase family
666666642MCM P-loop domain
232323318Squalene/phytoene synthase
91010101091068FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
79474351475971397AMP-binding enzyme
533444427G-protein alpha subunit
198810891072HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1071089101266His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
32112613261217137Tetratricopeptide repeat
334243221Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10796116655BRCA1 C Terminus (BRCT) domain
656364333Glycosyl transferases group 1
423242219Glycosyl transferase family 2
131112110SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
751714732Pectate lyase
433233523ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
60372042316673329Phosphopantetheine attachment site
333423321Formyl transferase
9109119121474Metallopeptidase family M24
133153162254Leucine Rich Repeat
57103811511511193alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444434427PB1 domain
222222214Staphylococcal nuclease homologue
9129129121275Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443533325Zinc finger, ZZ type
222122213HRDC domain
968696650CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
445454430S1 RNA binding domain
11111117HIUase/Transthyretin family
535363429AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
121116UvrD/REP helicase N-terminal domain
587958951Rhodanese-like domain
222222214Universal stress protein family
56284128403336262Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878889755tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
543436530Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
524252222IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
535362226Phospholipase D Active site motif
151414420Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
443444427RasGEF domain
443444427RasGEF N-terminal motif
1099999964RhoGAP domain
666666642RhoGEF domain
333333321SPRY domain
333333321RNA polymerase Rpb1, domain 2
322323217Guanylate kinase
544344428Gelsolin repeat
646465536UBA/TS-N domain
1781715171414102PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
212121110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
534354327Ribonuclease III domain
242324421Region in Clathrin and VPS
322333319RanBP1 domain
222222214PPIC-type PPIASE domain
334232219Zn-finger in Ran binding protein and others
1810178188988Zinc finger C-x8-C-x5-C-x3-H type (and similar)
423233421Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5912669661713242F-box domain
11111117Elongation factor 1 gamma, conserved domain
434445428Calpain family cysteine protease
112222212Copper fist DNA binding domain
865857746CRAL/TRIO domain
1093125101160BTB/POZ domain
222132113Ricin-type beta-trefoil lectin domain
11111218Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
8352641240Caspase domain
18715715121387GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
29192220232324160ABC transporter transmembrane region
677579748FAD binding domain
3410913111422113Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555656638Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
566666540Elongation factor G C-terminus
546544432HMGL-like
444444428DnaJ central domain
11Sulfotransferase domain
322334320Starch binding domain
233323319Ribosomal protein L1p/L10e family
798778955Cation transporting ATPase, C-terminus
910119109967Cation transporter/ATPase, N-terminus
11121118dUTPase
645446433Aconitase C-terminal domain
444444428Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
66322833396061319Acyl transferase domain
11111117Urease beta subunit
685656642Dihydrodipicolinate synthetase family
35173515381516171haloacid dehalogenase-like hydrolase
866979853Glycosyl hydrolases family 2
24131616172019125Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112116Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
312122112Adenylosuccinate synthetase
121121210Asparaginase, N-terminal
313233318Peptidase S24-like
11111117Inorganic pyrophosphatase
14191315131617107Glycosyl hydrolases family 16
322323318Glycosyl hydrolases family 15
1079688654NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333323320Glycosyl hydrolase family 20, catalytic domain
564667640HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34302828343543232GMC oxidoreductase
332222317Asparagine synthase
2266127172090Fungal cellulose binding domain
565656639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
383241425Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
533334425tRNA synthetases class I (E and Q), catalytic domain
311121211tRNA synthetases class I (R)
444344427XPG N-terminal domain
12676106754Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
432324523Choline/Carnitine o-acyltransferase
212221111Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111214111Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
8117778957Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
877777649Dual specificity phosphatase, catalytic domain
322232216P21-Rho-binding domain
1312131311131287PX domain
323232217Ras association (RalGDS/AF-6) domain
545454431UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222223215DAHP synthetase I family
9121191191071Carbon-nitrogen hydrolase
2111218N-acetyltransferase
11111117Prephenate dehydratase
444444428Syntaxin
545454431Pumilio-family RNA binding repeat
676777747Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
322222215tRNA N6-adenosine threonylcarbamoyltransferase
11212119Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
131414418Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
745555637Glycosyl hydrolase family 7
21115Ring hydroxylating alpha subunit (catalytic domain)
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
646645435POT family
11111117PWWP domain
22211920202322147SET domain
1178712101166Isochorismatase family
333333321Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
545555534XPG I-region
11114Acetokinase family
333332320DNA photolyase
22136317Nitroreductase family
8866115852Sulfatase
1