PFAM Domains • Sugiyamaella americana NRRL YB-2067 v1.0
Annotations/GenomesArxad1Nadfu1Sacce1Sugame1Symat1Tripe1Yarli1Zyghe1_2TotalAnnotation Description
PFAMs
5,9125,3245,5356,9515,7405,5095,7375,35746,065
3337333234333333268ATPase family associated with various cellular activities (AAA)
2626312529333223225ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
1314161313131413109Elongation factor Tu GTP binding domain
8878889864Helix-loop-helix DNA-binding domain
5421222119Hsp20/alpha crystallin family
7101477711770Hsp70 protein
89857811965KH domain
11111117SH2 domain
212122920212019153SH3 domain
10119111011101082Actin
171518117162012116Ankyrin repeat
112PAN domain
7776777755ADP-ribosylation factor family
24672028223719163Eukaryotic aspartyl protease
4433444430Cyclic nucleotide-binding domain
1221111110Cytochrome c
2221222215Double-stranded RNA binding motif
161511117161714107EF hand
21112184Fe-4S binding domain
3112222215Fibronectin type III domain
3222223319Globin
104652310343Glutathione S-transferase, C-terminal domain
1232111213Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
5685775447Homeodomain
2232222217lactate/malate dehydrogenase, NAD binding domain
5555435537Myosin head (motor domain)
134313101217678Cytochrome P450
87981148682838381714Protein kinase domain
9998895764Pyridine nucleotide-disulphide oxidoreductase
2524242527272423199Ras family
8947887758Response regulator receiver domain
1115412125RNase H
5858485760615557454RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
22022Reverse transcriptase (RNA-dependent DNA polymerase)
2111112110Copper/zinc superoxide dismutase (SODC)
2111222112Iron/manganese superoxide dismutases, alpha-hairpin domain
55455516550Subtilase family
6114344166392628309Sugar (and other) transporter
99109879869Thioredoxin
11112219Trypsin
4444444432Tubulin/FtsZ family, GTPase domain
12115von Willebrand factor type A domain
3841381834343438275Zinc finger, C2H2 type
353122234363631227Zinc finger, C3HC4 type (RING finger)
8362546539Zinc knuckle
2232222217Protein-tyrosine phosphatase
5120135039332938273short chain dehydrogenase
2515172726142018162Zinc-binding dehydrogenase
5324333326Thiolase, N-terminal domain
2222222216Beta-ketoacyl synthase, N-terminal domain
43224433252Fe-2S iron-sulfur cluster binding domain
1151111213Enolase, C-terminal TIM barrel domain
8898888865Glutamine amidotransferase class-I
1010109109101078TCP-1/cpn60 chaperonin family
2212222215Glutamine synthetase, catalytic domain
2112212112Triosephosphate isomerase
11111215111191191E1-E2 ATPase
8131079810570Core histone H2A/H2B/H3/H4
3481421124Alpha amylase, catalytic domain
11111117Phorbol esters/diacylglycerol binding domain (C1 domain)
5645546540Bacterial transferase hexapeptide (six repeats)
3435333327tRNA synthetases class I (I, L, M and V)
10101310898977Cyclin, N-terminal domain
737824435Carboxylesterase family
4444444432DNA polymerase family B
3333433325ATP synthase subunit C
2212223216Peroxidase
21238Beta-lactamase
2218212520223219179Calcineurin-like phosphoesterase
4346423531Cellulase (glycosyl hydrolase family 5)
6665666647tRNA synthetases class II (D, K and N)
3838343838363933294Mitochondrial carrier protein
11recA bacterial DNA recombination protein
1311111411131413100Aminotransferase class I and II
710113998865Phosphoribosyl transferase domain
12128111312101088Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2332222218Ribosomal protein S4/S9 N-terminal domain
2332222218Ribosomal protein S12/S23
222312113Bacterial regulatory helix-turn-helix proteins, AraC family
121111119Chaperonin 10 Kd subunit
99119788869C2 domain
1815241418171818142PH domain
9881010107769bZIP transcription factor
1599131110131090Aldehyde dehydrogenase family
9439536876675179527Fungal Zn(2)-Cys(6) binuclear cluster domain
151371415151514108Cytochrome b5-like Heme/Steroid binding domain
11Oxidoreductase molybdopterin binding domain
8786977759Oxidoreductase NAD-binding domain
1818171818181918144SNF2 family N-terminal domain
2322222217Ribosomal protein S7p/S5e
1415141616161613120Ubiquitin-conjugating enzyme
5676655545Isocitrate/isopropylmalate dehydrogenase
2332222218Ribosomal Proteins L2, RNA binding domain
1221111110Hsp90 protein
2222212215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
1331112113Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
124310Cupin
112Annexin
112Eukaryotic-type carbonic anhydrase
33233333232-oxoacid dehydrogenases acyltransferase (catalytic domain)
3221213115Catalase
11111117Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
4844336436Aminotransferase class-III
2322222217Ribosomal protein S19
1113111110DNA gyrase B
5474444436Thiamine pyrophosphate enzyme, central domain
3333333324Lyase
2232222217Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
121111119Adenylate and Guanylate cyclase catalytic domain
121111119ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
1221111110Pyruvate kinase, barrel domain
9106910109871Kinesin motor domain
2425212423213123192DnaJ domain
1414141414141413111Proteasome subunit
1141113113Major intrinsic protein
111111118ATP synthase
815519Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
1222112213Ribosomal protein L22p/L17e
2232222217Ribosomal protein L14p/L23e
10119119991078Ubiquitin family
4234433427Cofilin/tropomyosin-type actin-binding protein
222222221614-3-3 protein
111111129Alkaline phosphatase
111111118Zinc carboxypeptidase
208162220181713134Aldo/keto reductase family
141415815161416112Myb-like DNA-binding domain
3343333325Forkhead domain
211116Glycosyl hydrolases family 32 N-terminal domain
111211119Ribosomal protein L16p/L10e
2332221217Ribosomal protein S14p/S29e
3342333324FKBP-type peptidyl-prolyl cis-trans isomerase
1231111111Glutathione peroxidase
11211118
67755710653Flavodoxin
121111119Calreticulin family
6437656542Aminotransferase class-V
112111119Ribonucleotide reductase, small chain
3636563832343434300DEAD/DEAH box helicase
6259795955576256489Helicase conserved C-terminal domain
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2231111213Ribosomal protein L5
3324333425Pyridoxal-dependent decarboxylase conserved domain
2333222219Citrate synthase, C-terminal domain
5565555541GHMP kinases N terminal domain
6576667649Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
8878889965Pyridoxal-phosphate dependent enzyme
10107101099974NUDIX domain
4444444432pfkB family carbohydrate kinase
11114Glycosyl hydrolases family 28
22Luciferase-like monooxygenase
2222222216Ribosomal protein L3
2332222117Ribosomal protein L11, RNA binding domain
121312121010101089Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
4444444432ATP synthase alpha/beta chain, C terminal domain
5545555539Calponin homology (CH) domain
5673555541Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
111111118Fructose-1-6-bisphosphatase, N-terminal domain
2122222215Ribonucleotide reductase, all-alpha domain
2232222217Ribosomal protein S2
2242222218SRF-type transcription factor (DNA-binding and dimerisation domain)
910109697868GATA zinc finger
2323241420163123174Amino acid permease
1221211111Prolyl oligopeptidase family
2443222221Ribosomal protein L30p/L7e
8865874551Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4445444433Aconitase family (aconitate hydratase)
44Glycosyl hydrolase family 10
2333234323Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
2222221215Ribosomal protein S10p/S20e
4338434332Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
2222222216SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
3333222321Ribosomal protein L6
3333333324Polyprenyl synthetase
3453333327Hexokinase
4435444432Dynamin family
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
2111411112Rieske [2Fe-2S] domain
8788889864Biotin-requiring enzyme
1321111111Phosphofructokinase
2332222218Ribosomal protein S17
112111119Hydroxymethylglutaryl-coenzyme A reductase
3333333324FGGY family of carbohydrate kinases, N-terminal domain
74376610750Enoyl-CoA hydratase/isomerase
2332222218Ribosomal protein S9/S16
2232222217Transcription factor TFIIB repeat
7666866550Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
2222222216Chromo (CHRromatin Organisation MOdifier) domain
111111118Phosphatidylinositol-specific phospholipase C, Y domain
1113111110Phosphatidylinositol-specific phospholipase C, X domain
54475414649D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1111116Malic enzyme, N-terminal domain
1121111196-phosphogluconate dehydrogenase, C-terminal domain
4232333323Multicopper oxidase
51057646649WW domain
2222222216Ribosomal RNA adenine dimethylase
10818Yeast PIR protein repeat
99104889910510294100791WD domain, G-beta repeat
4334344429Heavy-metal-associated domain
4333443327Adenylate kinase
3233323322Phosphoglucomutase/phosphomannomutase, C-terminal domain
1222112112Ribosomal protein S8
1222111111Ribosomal protein S11
3344444329LIM domain
1213211112Regulator of chromosome condensation (RCC1) repeat
2432222219Ribosomal protein S13/S18
2222222216chorismate binding enzyme
455444443460s Acidic ribosomal protein
4444444432Prenyltransferase and squalene oxidase repeat
6883547647Protein kinase C terminal domain
11Spectrin repeat
111111118Single-strand binding protein family
1221111110S-adenosylmethionine synthetase, N-terminal domain
911108999974Bromodomain
75107611551Acyl-CoA dehydrogenase, C-terminal domain
1413161514141414114Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
1111222111Ribonuclease T2 family
3453443329HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
53389710752Serine carboxypeptidase
8798888864Phosphatidylinositol 3- and 4-kinase
3222211114Transketolase, thiamine diphosphate binding domain
2132222216Inositol monophosphatase family
6776664648Glutaredoxin
2222332319Isocitrate lyase family
2222222216Serine hydroxymethyltransferase
211111119Iron-containing alcohol dehydrogenase
2323222218Ribosomal protein L10
6773353438KOW motif
111111118Ribosomal protein L34
2223322319RF-1 domain
2112225520Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
1151111112IMP dehydrogenase / GMP reductase domain
121111119Glucose-6-phosphate dehydrogenase, NAD binding domain
6876666651Protein phosphatase 2C
3324333324Nucleotidyl transferase
111111118Carbonic anhydrase
3223221217Phosphoribulokinase / Uridine kinase family
4514444430Fatty acid desaturase
4464464436MutS domain V
111111118Delta-aminolevulinic acid dehydratase
4112222418Arginase family
6666666648MCM P-loop domain
111211119Squalene/phytoene synthase
681486107564FHA domain
1411101313121812103AMP-binding enzyme
2222222216G-protein alpha subunit
5674878550HMG (high mobility group) box
11Cytochrome c oxidase subunit III
5714554536His Kinase A (phospho-acceptor) domain
2322442221Armadillo/beta-catenin-like repeat
2322211518182216155Tetratricopeptide repeat
5221531423Ion transport protein
1113111110DNA gyrase/topoisomerase IV, subunit A
9910610910972BRCA1 C Terminus (BRCT) domain
4443445432Glycosyl transferases group 1
3222222217Glycosyl transferase family 2
1111228SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
3323333323CoA-ligase
3223333322Phosphopantetheine attachment site
2222222216Formyl transferase
8868987761Metallopeptidase family M24
10161131010101181Leucine Rich Repeat
241115514171715118alpha/beta hydrolase fold
3433333325RNA polymerase Rpb2, domain 6
2213223217PB1 domain
2212222215Staphylococcal nuclease homologue
1010811109111079Rab-GTPase-TBC domain
11111117Tudor domain
111111118WH1 domain
3123323421Zinc finger, ZZ type
112111119HRDC domain
11111079109976CBS domain
2232222217Ribosomal protein L13
2332221217Ribosomal protein L4/L1 family
11Clp protease
4443344430S1 RNA binding domain
11111117HIUase/Transthyretin family
4544334330AhpC/TSA family
4444544433tRNA synthetases class I (W and Y)
2232112215UvrD/REP helicase N-terminal domain
5597546546Rhodanese-like domain
222222214Universal stress protein family
2218132120172621158Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
8897888864tRNA synthetase class II core domain (G, H, P, S and T)
2222222216SpoU rRNA Methylase family
2222212215Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
2121219PDZ domain
2312222216Class II Aldolase and Adducin N-terminal domain
2455434431Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
6545565541Fes/CIP4, and EFC/F-BAR homology domain
3332214321IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
2221222215Phospholipase D Active site motif
2131119Regulator of G protein signaling domain
3544444432GTPase-activator protein for Ras-like GTPase
4445444433RasGEF domain
4443444431RasGEF N-terminal motif
111111101110101084RhoGAP domain
4234345429RhoGEF domain
3533444430SPRY domain
3334333325RNA polymerase Rpb1, domain 2
44Flocculin repeat
111111118Guanylate kinase
4344344329Gelsolin repeat
8694879556UBA/TS-N domain
1514131114151415111PHD-finger
11114GGL domain
6556656645HECT-domain (ubiquitin-transferase)
1111116Helix-hairpin-helix motif
1121112110MSP (Major sperm protein) domain
2131322317Ribonuclease III domain
2235222220Region in Clathrin and VPS
3332333323RanBP1 domain
111111118PPIC-type PPIASE domain
111111118Zn-finger in Ran binding protein and others
1214781212101085Zinc finger C-x8-C-x5-C-x3-H type (and similar)
112B-box zinc finger
11Poly(ADP-ribose) polymerase catalytic domain
11Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
3915122062764316283F-box domain
1221112111Elongation factor 1 gamma, conserved domain
11111117Calpain family cysteine protease
2332222218Copper fist DNA binding domain
4466447439CRAL/TRIO domain
4212441532BTB/POZ domain
112Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
3313333322Voltage gated chloride channel
121111119Caspase domain
111422213GDSL-like Lipase/Acylhydrolase
2212222215Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
3131Seripauperin and TIP1 family
81210111316161096ABC transporter transmembrane region
11011Integrase core domain
3333333324FAD binding domain
111115Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
13111119HAMP domain
2332222218ribosomal L5P family C-terminus
2323DUP family
6776557649Insulinase (Peptidase family M16)
4323333324Dehydrogenase E1 component
111111118Lumazine binding domain
7776767653Elongation factor G C-terminus
4564444435HMGL-like
4454444433DnaJ central domain
2234222219Ribosomal protein L1p/L10e family
5454554537Cation transporting ATPase, C-terminus
7676675751Cation transporter/ATPase, N-terminus
11111117dUTPase
4445444433Aconitase C-terminal domain
3443333326Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2112122112Acyl transferase domain
2211129Dihydrodipicolinate synthetase family
2619251225252121174haloacid dehalogenase-like hydrolase
3333214Glycosyl hydrolases family 2
43244103434Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
111111118Adenylosuccinate synthetase
55Asparaginase, N-terminal
3333333223Peptidase S24-like
2222222216Inorganic pyrophosphatase
3234343325Glycosyl hydrolases family 16
211111119Glycosyl hydrolases family 15
82231046439NADH:flavin oxidoreductase / NADH oxidase family
121111183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2145113Glycosyl hydrolase family 20, catalytic domain
3143333323HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
2121118GMC oxidoreductase
2232222217Asparagine synthase
7478777754Septin
121111119EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
23421214Flavin-binding monooxygenase-like
3333333324tRNA synthetases class I (E and Q), catalytic domain
112111119tRNA synthetases class I (R)
3354334328XPG N-terminal domain
5243443328Metallo-beta-lactamase superfamily
11114F5/8 type C domain
2232322218Choline/Carnitine o-acyltransferase
111111118Putative esterase
111111118Ferrochelatase
3433333325Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
4434444431RNB domain
426Dioxygenase
3233322220CNH domain
1122222113Diacylglycerol kinase catalytic domain
7867776654Dual specificity phosphatase, catalytic domain
2152322320P21-Rho-binding domain
1313141212141313104PX domain
3321233219Ras association (RalGDS/AF-6) domain
6375646542UBX domain
4544444433VHS domain
111111118Phosphoinositide 3-kinase C2
2222222216DAHP synthetase I family
4454444635Carbon-nitrogen hydrolase
111111118Prephenate dehydratase
3453336330Syntaxin
4774555643Pumilio-family RNA binding repeat
7646766547Histone-like transcription factor (CBF/NF-Y) and archaeal histone
111111118Pterin binding enzyme
111111118ER lumen protein retaining receptor
232