PFAM Domains • Trametes cingulata BRFM 1805 v1.0
Annotations/GenomesArtel1Pycci1Pycco1Pycsa1Traci1Tralj1Trave1TotalAnnotation Description
PFAMs
7,8307,4567,9348,0328,0277,8478,61455,740
42414241404147294ATPase family associated with various cellular activities (AAA)
40363939413945279ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151515141514102Elongation factor Tu GTP binding domain
118111111111174Helix-loop-helix DNA-binding domain
1191010109968Hsp20/alpha crystallin family
10777712757Hsp70 protein
888788855KH domain
11111117SH2 domain
24232527262425174SH3 domain
1010101010101070Actin
23252625222726174Ankyrin repeat
767879751ADP-ribosylation factor family
37424147424053302Eukaryotic aspartyl protease
333332320Cyclic nucleotide-binding domain
11111117Cytochrome c
6677119551Double-stranded RNA binding motif
18191919191918131EF hand
1212112104Fe-4S binding domain
12111118Fibronectin type III domain
11111128Globin
14142020161525124Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1079101110966Homeodomain
11114Laminin EGF domain
222222214lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
655545434Myosin head (motor domain)
135104124129133124185934Cytochrome P450
1591381621841771741861,180Protein kinase domain
15161616161516110Pyridine nucleotide-disulphide oxidoreductase
24242524242429174Ras family
1189999964Response regulator receiver domain
837283615642172RNase H
66626769656966464RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
74377Reverse transcriptase (RNA-dependent DNA polymerase)
11111117Copper/zinc superoxide dismutase (SODC)
222222315Iron/manganese superoxide dismutases, alpha-hairpin domain
875489546Subtilase family
37313030273031216Sugar (and other) transporter
888888856Thioredoxin
555555535Tubulin/FtsZ family, GTPase domain
312233317von Willebrand factor type A domain
62365556676160397Zinc finger, C2H2 type
68385967616357413Zinc finger, C3HC4 type (RING finger)
12572119242028181Zinc knuckle
222322215Protein-tyrosine phosphatase
856983898378113600short chain dehydrogenase
48435249555373373Zinc-binding dehydrogenase
544444429Thiolase, N-terminal domain
422244321Beta-ketoacyl synthase, N-terminal domain
3332333202Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
8788881057Glutamine amidotransferase class-I
1010101011121073TCP-1/cpn60 chaperonin family
343333322Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
1212111012121180E1-E2 ATPase
16161616151614109Core histone H2A/H2B/H3/H4
111115Copper binding proteins, plastocyanin/azurin family
666666642Alpha amylase, catalytic domain
646666640Phorbol esters/diacylglycerol binding domain (C1 domain)
455555534Bacterial transferase hexapeptide (six repeats)
333333321tRNA synthetases class I (I, L, M and V)
106101011111068Cyclin, N-terminal domain
16171717211720125Carboxylesterase family
444444428DNA polymerase family B
333436325ATP synthase subunit C
12111212231827115Peroxidase
444543731Beta-lactamase
444464430C-5 cytosine-specific DNA methylase
27222324262727176Calcineurin-like phosphoesterase
1013131210121383Cellulase (glycosyl hydrolase family 5)
666666642tRNA synthetases class II (D, K and N)
37353738373736257Mitochondrial carrier protein
18212020181820135Aminotransferase class I and II
767766746Phosphoribosyl transferase domain
1413141414141497Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
2111117Chaperonin 10 Kd subunit
1413131414131495C2 domain
21172221212120143PH domain
634445632bZIP transcription factor
19181917151617121Aldehyde dehydrogenase family
83296964777684482Fungal Zn(2)-Cys(6) binuclear cluster domain
23242322252524166Cytochrome b5-like Heme/Steroid binding domain
354444428Oxidoreductase molybdopterin binding domain
1213131312131591Oxidoreductase NAD-binding domain
20202323232120150SNF2 family N-terminal domain
222222315Ribosomal protein S7p/S5e
22192220212120145Ubiquitin-conjugating enzyme
555555535Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222222214Hsp90 protein
222222315Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
123Chitin recognition protein
212222213Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
666675642Cupin
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
433333322Catalase
11111117Disintegrin
12131921851997UDP-glucoronosyl and UDP-glucosyl transferase
565555536Aminotransferase class-III
232222215Ribosomal protein S19
11111117DNA gyrase B
444455430Thiamine pyrophosphate enzyme, central domain
333333321Lyase
11111117Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
121222111Indole-3-glycerol phosphate synthase
11111117Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1099899963Kinesin motor domain
31253031323131211DnaJ domain
1414141414151499Proteasome subunit
644454532Major intrinsic protein
11111117ATP synthase
222222214Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
122222112Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
19141718171717119Ubiquitin family
555555434Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
322233318Alkaline phosphatase
11111117Zinc carboxypeptidase
45495659505067376Aldo/keto reductase family
1110121112121280Myb-like DNA-binding domain
545555635Forkhead domain
11111139Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
212222213Ribosomal protein S14p/S29e
333333321FKBP-type peptidyl-prolyl cis-trans isomerase
11111128Glutathione peroxidase
121112210
666566641Flavodoxin
11Tropomyosin
11111117Calreticulin family
312133518Common central domain of tyrosinase
7676871051Aminotransferase class-V
2221852334Ribonucleotide reductase, small chain
47484850574946345DEAD/DEAH box helicase
77888690918476592Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222122213Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
645444431Pyridoxal-dependent decarboxylase conserved domain
333333321Citrate synthase, C-terminal domain
556555536GHMP kinases N terminal domain
767777748Biotin carboxylase, N-terminal domain
11111139Tryptophan synthase alpha chain
9999991165Pyridoxal-phosphate dependent enzyme
16141516141515105NUDIX domain
333333321pfkB family carbohydrate kinase
967788954Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
878898755Histidine phosphatase superfamily (branch 1)
11121118Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
444444428Calponin homology (CH) domain
645555535Glutamine amidotransferases class-II
222222214Ribosomal protein S15
846555841Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
111231211Ribonucleotide reductase, all-alpha domain
22223213Ribosomal protein S2
212222213SRF-type transcription factor (DNA-binding and dimerisation domain)
11810898963GATA zinc finger
20182019212124143Amino acid permease
444444428Prolyl oligopeptidase family
11121118Ribosomal protein L30p/L7e
15131417131315100Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
544444530Aconitase family (aconitate hydratase)
566666641Glycosyl hydrolase family 10
11111117Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
122222213Nucleoside diphosphate kinase
11121118Tetraspanin family
222222214Ribosomal protein S10p/S20e
855477743Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
12111118SecY translocase
31111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
444334325Polyprenyl synthetase
222222214Hexokinase
859977853Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
443444427Rieske [2Fe-2S] domain
112Phytochrome region
112Proton-conducting membrane transporter
979899960Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
434443426FGGY family of carbohydrate kinases, N-terminal domain
888789856Enoyl-CoA hydratase/isomerase
332222216Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
668877749Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
833127139991Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
11112118Phosphatidylinositol-specific phospholipase C, X domain
766688748D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333833326Malic enzyme, N-terminal domain
2222222146-phosphogluconate dehydrogenase, C-terminal domain
1067710101060Multicopper oxidase
959899756WW domain
213222214Ribosomal RNA adenine dimethylase
116120147167126133129938WD domain, G-beta repeat
545454532Heavy-metal-associated domain
333333321Adenylate kinase
222222113Phosphoglucomutase/phosphomannomutase, C-terminal domain
11111117Ribosomal protein S8
112221110Ribosomal protein S11
656666540LIM domain
444544227Regulator of chromosome condensation (RCC1) repeat
222222113Ribosomal protein S13/S18
222222214chorismate binding enzyme
33323332060s Acidic ribosomal protein
112ATP synthase B/B' CF(0)
444444428Prenyltransferase and squalene oxidase repeat
677766645Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
1010101010101070Bromodomain
891011891065Acyl-CoA dehydrogenase, C-terminal domain
15151614141514103Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
322232216Ribonuclease T2 family
555545635HSF-type DNA-binding
222212213SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
26201920201924148Serine carboxypeptidase
878888956Phosphatidylinositol 3- and 4-kinase
222233216Transketolase, thiamine diphosphate binding domain
11WHEP-TRS domain
422233218Inositol monophosphatase family
444444428Glutaredoxin
434444427Isocitrate lyase family
11111117Serine hydroxymethyltransferase
343334323Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
435454530KOW motif
11111117Ribosomal protein L34
1113Negative factor, (F-Protein) or Nef
323333320RF-1 domain
222222214Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
979101512870Protein phosphatase 2C
223333218Nucleotidyl transferase
222122516Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
1111101015151688Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
555544432Arginase family
666676643MCM P-loop domain
11111117Squalene/phytoene synthase
1210121213121384FHA domain
34333737292733230AMP-binding enzyme
1414141414141498G-protein alpha subunit
18161717212128138HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
566666540His Kinase A (phospho-acceptor) domain
333433322Armadillo/beta-catenin-like repeat
29263028312726197Tetratricopeptide repeat
323323319Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
910131312111179BRCA1 C Terminus (BRCT) domain
666666642Glycosyl transferases group 1
444444428Glycosyl transferase family 2
111115SAM domain (Sterile alpha motif)
333323320linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
1111116ribonuclease
11111117Urease, gamma subunit
333333321CoA-ligase
119101069863Phosphopantetheine attachment site
222222214Formyl transferase
1111111110101074Metallopeptidase family M24
14151515141514102Leucine Rich Repeat
52444849444663346alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
535555533PB1 domain
222222214Staphylococcal nuclease homologue
1010101010101070Rab-GTPase-TBC domain
11111117Tudor domain
222221213WH1 domain
433244626Zinc finger, ZZ type
1111217HRDC domain
979898959CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
1111116Clp protease
433353324S1 RNA binding domain
11111117HIUase/Transthyretin family
554544532AhpC/TSA family
444444327tRNA synthetases class I (W and Y)
11111117UvrD/REP helicase N-terminal domain
434444528Rhodanese-like domain
212222213Universal stress protein family
36243333353338232Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
676666643tRNA synthetase class II core domain (G, H, P, S and T)
44Phage integrase family
222222315Tetrapyrrole (Corrin/Porphyrin) Methylases
132111110Glycosyl transferase family, a/b domain
111122311Class II Aldolase and Adducin N-terminal domain
333333321Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
545554634Fes/CIP4, and EFC/F-BAR homology domain
243433423IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
323333320Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
555555535RasGEF domain
656666641RasGEF N-terminal motif
1312131312131389RhoGAP domain
1213131213131288RhoGEF domain
434444427SPRY domain
333333321RNA polymerase Rpb1, domain 2
11112118Guanylate kinase
553333426Gelsolin repeat
989999962UBA/TS-N domain
18151918191619124PHD-finger
212222213GGL domain
644444430HECT-domain (ubiquitin-transferase)
1111116Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
646555536Ribonuclease III domain
222222214Region in Clathrin and VPS
444444327RanBP1 domain
212222213PPIC-type PPIASE domain
434554429Zn-finger in Ran binding protein and others
23212626242622168Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116B-box zinc finger
223322317Poly(ADP-ribose) polymerase catalytic domain
222222214Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
11068112123138113176840F-box domain
11111117Elongation factor 1 gamma, conserved domain
11111117Calpain family cysteine protease
212122111Copper fist DNA binding domain
577767746CRAL/TRIO domain
24121918252647171BTB/POZ domain
333332320Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333334322Voltage gated chloride channel
856867747Caspase domain
858798954GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
20181818221925140ABC transporter transmembrane region
93194Integrase core domain
555554534FAD binding domain
222222315Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
12111118HAMP domain
222222214ribosomal L5P family C-terminus
667666643Insulinase (Peptidase family M16)
555555535Dehydrogenase E1 component
11111117Lumazine binding domain
677766645Elongation factor G C-terminus
555555434HMGL-like
444444327DnaJ central domain
212222415Starch binding domain
222322215Ribosomal protein L1p/L10e family
554455533Cation transporting ATPase, C-terminus
665566640Cation transporter/ATPase, N-terminus
11111117dUTPase
544444530Aconitase C-terminal domain
333333321Amino acid kinase family
111115N-(5'phosphoribosyl)anthranilate (PRA) isomerase
422284426Acyl transferase domain
11111117Urease beta subunit
233333320Dihydrodipicolinate synthetase family
29272726283126194haloacid dehalogenase-like hydrolase
11121129Glycosyl hydrolases family 2
1111111212131181Glycosyl hydrolases family 18
11111128Proliferating cell nuclear antigen, N-terminal domain
1111116Acylphosphatase
112411111Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
222222214Peptidase S24-like
11111117Inorganic pyrophosphatase
686575643Glycosyl hydrolases family 16
222422418Glycosyl hydrolases family 15
179111014121588NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
555565637Glycosyl hydrolase family 20, catalytic domain
555556940HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
24222323171722148GMC oxidoreductase
222222214Asparagine synthase
20192121232122147Fungal cellulose binding domain
666666642Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
232332318Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
558555538XPG N-terminal domain
16121514171515104Metallo-beta-lactamase superfamily
111115F5/8 type C domain
444444428Choline/Carnitine o-acyltransferase
11111117Putative esterase
1111116Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
333344323Dioxygenase
544444530CNH domain
212222213Diacylglycerol kinase catalytic domain
1411131313141391Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
443333323P21-Rho-binding domain
1411141314141494PX domain
433333322Ras association (RalGDS/AF-6) domain
434444427UBX domain
555555535VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
444444428Carbon-nitrogen hydrolase
1111116Prephenate dehydratase
11PKD domain
556655436Syntaxin
555555535Pumilio-family RNA binding repeat
11Apidaecin
647667642Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
333433322impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
333343423Glycosyl hydrolase family 7
212222213RNA pseudouridylate synthase
968988856Histone deacetylase domain
11111128POT family
222222214PWWP domain
15121714161716107SET domain
525555532Isochorismatase family
323333219Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
699766750XPG I-region
111126Acetokinase family
11111117DNA photolyase
11111117Cation-independent mannose-6-phosphate receptor repeat
11114Nitroreductase family
111122210Cytosol aminopeptidase family, catalytic domain
112Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
333333321Acyl CoA binding protein
555555737Cullin family
11111117Elongation factor TS
534334426FAD binding domain
1368986555O-methyltransferase domain
644354632EamA-like transporter family
222222214
85777