PFAM Domains • Cytidiella melzeri FP 102339 v1.0
Annotations/GenomesCytmel1Dicsq1Fompi3Phchr2PosplRSB12_1Trave1Wolco1TotalAnnotation Description
PFAMs
8,9648,0728,1748,2287,7468,6147,82557,623
46445047424747323ATPase family associated with various cellular activities (AAA)
45384749464538308ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
14141417141414101Elongation factor Tu GTP binding domain
1010161111111180Helix-loop-helix DNA-binding domain
7147959758Hsp20/alpha crystallin family
91416897770Hsp70 protein
7148898761KH domain
1111116SH2 domain
16242522212521154SH3 domain
1010101010101070Actin
5172825292630160Ankyrin repeat
777777749ADP-ribosylation factor family
36444059455339316Eukaryotic aspartyl protease
333343322Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
22Cytochrome b/b6/petB
11111117Cytochrome c
677595645Double-stranded RNA binding motif
2191723151816110EF hand
11112284Fe-4S binding domain
111115Fibronectin type III domain
111126Globin
13181422192515126Glutathione S-transferase, C-terminal domain
112111310Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
9711989659Homeodomain
112Laminin EGF domain
224222216lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
567544435Myosin head (motor domain)
801721701551971851921,151Cytochrome P450
1661471541531501861521,108Protein kinase domain
9161925171619121Pyridine nucleotide-disulphide oxidoreductase
28222528262925183Ras family
128911991068Response regulator receiver domain
178591421294RNase H
59606771626664449RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1337Reverse transcriptase (RNA-dependent DNA polymerase)
11111117Copper/zinc superoxide dismutase (SODC)
232323217Iron/manganese superoxide dismutases, alpha-hairpin domain
763425229Subtilase family
27313027303132208Sugar (and other) transporter
98910108963Thioredoxin
856555539Tubulin/FtsZ family, GTPase domain
47923429von Willebrand factor type A domain
23506752956054401Zinc finger, C2H2 type
9596661555765372Zinc finger, C3HC4 type (RING finger)
11311314952842234Zinc knuckle
222222214Protein-tyrosine phosphatase
578212683105113111677short chain dehydrogenase
39645359587362408Zinc-binding dehydrogenase
545654433Thiolase, N-terminal domain
248273834Beta-ketoacyl synthase, N-terminal domain
1233333182Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11121118Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
7798910959Glutamine amidotransferase class-I
101010109101069TCP-1/cpn60 chaperonin family
11ATP synthase A chain
337443327Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
1614161213111193E1-E2 ATPase
15191516151415109Core histone H2A/H2B/H3/H4
1146Copper binding proteins, plastocyanin/azurin family
886866850Alpha amylase, catalytic domain
466656639Phorbol esters/diacylglycerol binding domain (C1 domain)
554645433Bacterial transferase hexapeptide (six repeats)
533423323tRNA synthetases class I (I, L, M and V)
1212121011101077Cyclin, N-terminal domain
17242112162020130Carboxylesterase family
544414426DNA polymerase family B
333343322ATP synthase subunit C
614217227270Peroxidase
156367230Beta-lactamase
443544327C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
23252726242727179Calcineurin-like phosphoesterase
1612141412131293Cellulase (glycosyl hydrolase family 5)
676666643tRNA synthetases class II (D, K and N)
40373838373639265Mitochondrial carrier protein
19181615192016123Aminotransferase class I and II
466667641Phosphoribosyl transferase domain
1312131414141494Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11111117Chaperonin 10 Kd subunit
18121315151413100C2 domain
8221823192021131PH domain
854746438bZIP transcription factor
20191821191716130Aldehyde dehydrogenase family
57776186448466475Fungal Zn(2)-Cys(6) binuclear cluster domain
25232524252429175Cytochrome b5-like Heme/Steroid binding domain
233444626Oxidoreductase molybdopterin binding domain
101211161015983Oxidoreductase NAD-binding domain
22212126242026160SNF2 family N-terminal domain
222223215Ribosomal protein S7p/S5e
25202122222021151Ubiquitin-conjugating enzyme
656555537Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
224322217Hsp90 protein
122223214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
322222215Cysteine-rich secretory protein family
1111127Ribosomal protein S3, C-terminal domain
676976546Cupin
235Chalcone and stilbene synthases, N-terminal domain
3332333202-oxoacid dehydrogenases acyltransferase (catalytic domain)
333543425Catalase
11114Disintegrin
4635119139UDP-glucoronosyl and UDP-glucosyl transferase
558555538Aminotransferase class-III
222222214Ribosomal protein S19
12111118DNA gyrase B
343334323Thiamine pyrophosphate enzyme, central domain
333333321Lyase
21121119Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
122121110Indole-3-glycerol phosphate synthase
132111110Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
13971089864Kinesin motor domain
28283332323134218DnaJ domain
1414141413141497Proteasome subunit
654925435Major intrinsic protein
11111117ATP synthase
142222114Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
212221111Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
16171719191716121Ubiquitin family
555654535Cofilin/tropomyosin-type actin-binding protein
21223221414-3-3 protein
21213110Alkaline phosphatase
11111117Zinc carboxypeptidase
30615556596754382Aldo/keto reductase family
613141413121284Myb-like DNA-binding domain
559556540Forkhead domain
2439Glycosyl hydrolases family 32 N-terminal domain
21111118Ribosomal protein L16p/L10e
212222213Ribosomal protein S14p/S29e
4312333331FKBP-type peptidyl-prolyl cis-trans isomerase
11111218Glutathione peroxidase
12212210
4651466445Flavodoxin
11Tropomyosin
11121118Calreticulin family
13315215Common central domain of tyrosinase
7779610854Aminotransferase class-V
222423217Ribonucleotide reductase, small chain
110526349484651419DEAD/DEAH box helicase
125898388827688631Helicase conserved C-terminal domain
113111210EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
344544428Pyridoxal-dependent decarboxylase conserved domain
433343424Citrate synthase, C-terminal domain
555655536GHMP kinases N terminal domain
566667945Biotin carboxylase, N-terminal domain
11111319Tryptophan synthase alpha chain
8911109111068Pyridoxal-phosphate dependent enzyme
12151517141515103NUDIX domain
533433324pfkB family carbohydrate kinase
5712589955Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
778997956Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
545544431Calponin homology (CH) domain
254545429Glutamine amidotransferases class-II
222222214Ribosomal protein S15
2413628439Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
11111218Ribonucleotide reductase, all-alpha domain
23222213Ribosomal protein S2
222212213SRF-type transcription factor (DNA-binding and dimerisation domain)
101099991066GATA zinc finger
12242320252423151Amino acid permease
746654638Prolyl oligopeptidase family
22111119Ribosomal protein L30p/L7e
1414151012151292Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4454451036Aconitase family (aconitate hydratase)
653636433Glycosyl hydrolase family 10
11111117Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
222222214Nucleoside diphosphate kinase
322121112Tetraspanin family
222222214Ribosomal protein S10p/S20e
574847439Arrestin (or S-antigen), N-terminal domain
11211118Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
383453430Polyprenyl synthetase
222222214Hexokinase
769768750Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
334444325Rieske [2Fe-2S] domain
112Phytochrome region
22Proton-conducting membrane transporter
788989857Biotin-requiring enzyme
11121118Phosphofructokinase
232222215Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333334322FGGY family of carbohydrate kinases, N-terminal domain
8879981261Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
242222216Transcription factor TFIIB repeat
769887853Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
811810591162Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
21111118Phosphatidylinositol-specific phospholipase C, X domain
5710787852D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
332333421Malic enzyme, N-terminal domain
1222222136-phosphogluconate dehydrogenase, C-terminal domain
21375410546Multicopper oxidase
97101177859WW domain
222322215Ribosomal RNA adenine dimethylase
118192138140117129139973WD domain, G-beta repeat
543545430Heavy-metal-associated domain
333333321Adenylate kinase
212221111Phosphoglucomutase/phosphomannomutase, C-terminal domain
212211211Ribosomal protein S8
21211119Ribosomal protein S11
665645537LIM domain
423332320Regulator of chromosome condensation (RCC1) repeat
212221212Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
232222215chorismate binding enzyme
23332331960s Acidic ribosomal protein
444544530Prenyltransferase and squalene oxidase repeat
667676644Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
10811911101069Bromodomain
81099810963Acyl-CoA dehydrogenase, C-terminal domain
14141615141415102Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
223222215Ribonuclease T2 family
754426432HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
12111118Urease alpha-subunit, N-terminal domain
21181022152411121Serine carboxypeptidase
788889856Phosphatidylinositol 3- and 4-kinase
222222214Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
11WHEP-TRS domain
233222216Inositol monophosphatase family
444544429Glutaredoxin
243434323Isocitrate lyase family
11211118Serine hydroxymethyltransferase
334433424Iron-containing alcohol dehydrogenase
222122213Ribosomal protein L10
345355530KOW motif
1111116Ribosomal protein L34
11Ribosomal protein L33
433323321RF-1 domain
324342624Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111139DNA polymerase family A
123111110IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
6769681052Protein phosphatase 2C
333322319Nucleotidyl transferase
265425226Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
10911712161075Fatty acid desaturase
6576861048MutS domain V
11111117Delta-aminolevulinic acid dehydratase
554754535Arginase family
666666642MCM P-loop domain
21111118Squalene/phytoene synthase
13129151013880FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
32342745353334240AMP-binding enzyme
22151413151416109G-protein alpha subunit
12161617262814129HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Haemagglutinin
11Cytochrome c oxidase subunit III
856755642His Kinase A (phospho-acceptor) domain
233343422Armadillo/beta-catenin-like repeat
15263328342633195Tetratricopeptide repeat
323343422Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
88910911964BRCA1 C Terminus (BRCT) domain
576666642Glycosyl transferases group 1
434644429Glycosyl transferase family 2
11215SAM domain (Sterile alpha motif)
323233319linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
1312119ribonuclease
12111118Urease, gamma subunit
333333321CoA-ligase
8981068756Phosphopantetheine attachment site
222222214Formyl transferase
1110101111101073Metallopeptidase family M24
316161515141796Leucine Rich Repeat
7434658326336285alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
658655742PB1 domain
222222214Staphylococcal nuclease homologue
129911910868Rab-GTPase-TBC domain
21111118Tudor domain
221222213WH1 domain
343536327Zinc finger, ZZ type
1111116HRDC domain
61099891061CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
534333425S1 RNA binding domain
11111117HIUase/Transthyretin family
544645432AhpC/TSA family
444443427tRNA synthetases class I (W and Y)
311111311UvrD/REP helicase N-terminal domain
844645435Rhodanese-like domain
222222214Universal stress protein family
20303743303834232Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
666666642tRNA synthetase class II core domain (G, H, P, S and T)
223223216Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
2136Class II Aldolase and Adducin N-terminal domain
433333322Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
545436532Fes/CIP4, and EFC/F-BAR homology domain
244534325IQ calmodulin-binding motif
122222213Phosphoinositide 3-kinase family, accessory domain (PIK domain)
235443425Phospholipase D Active site motif
311121211Regulator of G protein signaling domain
444454530GTPase-activator protein for Ras-like GTPase
876565643RasGEF domain
877676748RasGEF N-terminal motif
1212141312131288RhoGAP domain
1313131413121492RhoGEF domain
423544426SPRY domain
334333322RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
343434324Gelsolin repeat
477979851UBA/TS-N domain
13171617161916114PHD-finger
212212212GGL domain
444444428HECT-domain (ubiquitin-transferase)
12432214Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
479875848Ribonuclease III domain
422222216Region in Clathrin and VPS
423333321RanBP1 domain
234222318PPIC-type PPIASE domain
1531241430Zn-finger in Ran binding protein and others
15222327142222145Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
626973639Poly(ADP-ribose) polymerase catalytic domain
222222214Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2610013314111417685775F-box domain
31111119Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
214331216Copper fist DNA binding domain
7677971053CRAL/TRIO domain
39305227364720251BTB/POZ domain
8612320Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333333422Voltage gated chloride channel
5101791071876Caspase domain
310101159351GDSL-like Lipase/Acylhydrolase
21111118Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
20182424202520151ABC transporter transmembrane region
21159Integrase core domain
454855334FAD binding domain
22413113Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
666766744Insulinase (Peptidase family M16)
444445328Dehydrogenase E1 component
11111117Lumazine binding domain
666766643Elongation factor G C-terminus
445474432HMGL-like
444543428DnaJ central domain
122214113Starch binding domain
322212315Ribosomal protein L1p/L10e family
677455438Cation transporting ATPase, C-terminus
679576646Cation transporter/ATPase, N-terminus
1111712133dUTPase
445445632Aconitase C-terminal domain
333333321Amino acid kinase family
411111110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2412284840Acyl transferase domain
12111118Urease beta subunit
222423419Dihydrodipicolinate synthetase family
13343228342631198haloacid dehalogenase-like hydrolase
122122212Glycosyl hydrolases family 2
12141710911982Glycosyl hydrolases family 18
11111218Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
11111128Acylphosphatase
11211118Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
123322215Peptidase S24-like
11111117Inorganic pyrophosphatase
1266576547Glycosyl hydrolases family 16
222224216Glycosyl hydrolases family 15
10131462015785NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
544436228Glycosyl hydrolase family 20, catalytic domain
456569641HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
23372235272215181GMC oxidoreductase
222222214Asparagine synthase
2117332293Fungal cellulose binding domain
776566643Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
542523627Flavin-binding monooxygenase-like
323333320tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
557655437XPG N-terminal domain
712111611151385Metallo-beta-lactamase superfamily
111115F5/8 type C domain
444544429Choline/Carnitine o-acyltransferase
11111117Putative esterase
11Furin-like cysteine rich region
1113Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
322523219Dioxygenase
743435329CNH domain
222222214Diacylglycerol kinase catalytic domain
1411171113131392Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
334443425P21-Rho-binding domain
14141616131414101PX domain
343343424Ras association (RalGDS/AF-6) domain
444444428UBX domain
555555535VHS domain
1111116Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
443434325Carbon-nitrogen hydrolase
11N-acetyltransferase
11111117Prephenate dehydratase
455544532Syntaxin
456555535Pumilio-family RNA binding repeat
557766743Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
333333321impB/mucB/samB family
1111116
11111117Ribosomal L15
31111119Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
1111116Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
348419Glycosyl hydrolase family 7
214222215RNA pseudouridylate synthase
1286968655Histone deacetylase domain
122112110POT family
221122212PWWP domain
20161715161616116SET domain
554925434Isochorismatase family
221212212Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
968767649XPG I-region
1111116Acetokinase family
11111117DNA photolyase
1111116Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
111142111Cytosol aminopeptidase family, catalytic domain
111115Sulfatase
11111117