PFAM Domains • Russula seminuda PSC4341-TAS1 v1.0
Annotations/GenomesRusbre1Ruscom1Rusdis1Rusoch1Rusrug1Russem1Rusvin1TotalAnnotation Description
PFAMs
8,6937,9658,3029,0458,5338,5288,30859,374
37413944384042281ATPase family associated with various cellular activities (AAA)
36314034333428236ABC transporter
444544631ATP synthase alpha/beta family, nucleotide-binding domain
16141716171518113Elongation factor Tu GTP binding domain
111111111111975Helix-loop-helix DNA-binding domain
465845436Hsp20/alpha crystallin family
887721101374Hsp70 protein
788677750KH domain
11Methyl-accepting chemotaxis protein (MCP) signalling domain
15141314161414100SH3 domain
111113139101279Actin
41172532383737227Ankyrin repeat
7777713755ADP-ribosylation factor family
21182235342547202Eukaryotic aspartyl protease
333333422Cyclic nucleotide-binding domain
11211118Cytochrome c
8581188856Double-stranded RNA binding motif
233442321EF hand
739855542Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
881018881474Homeodomain
222222214lactate/malate dehydrogenase, NAD binding domain
754446535Myosin head (motor domain)
1471121111691661131931,011Cytochrome P450
1981671831831621801701,243Protein kinase domain
9108868857Pyridine nucleotide-disulphide oxidoreductase
40293228432829229Ras family
978786853Response regulator receiver domain
14822102644RNase H
66616671586056438RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
1178697654Subtilase family
25192119272117149Sugar (and other) transporter
101111131212877Thioredoxin
6566661146Tubulin/FtsZ family, GTPase domain
11von Willebrand factor type A domain
23203224232521168Zinc finger, C2H2 type
5776118650Zinc finger, C3HC4 type (RING finger)
779985752Zinc knuckle
222222214Protein-tyrosine phosphatase
52373639453437280short chain dehydrogenase
18151614141913109Zinc-binding dehydrogenase
545665536Thiolase, N-terminal domain
222212213Beta-ketoacyl synthase, N-terminal domain
11111162Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
7989891060Glutamine amidotransferase class-I
1010191412111288TCP-1/cpn60 chaperonin family
333343322Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
18182117171718126E1-E2 ATPase
13151319151314102Core histone H2A/H2B/H3/H4
11147Copper binding proteins, plastocyanin/azurin family
779666647Alpha amylase, catalytic domain
944446536Phorbol esters/diacylglycerol binding domain (C1 domain)
444433426Bacterial transferase hexapeptide (six repeats)
654444431tRNA synthetases class I (I, L, M and V)
16999981575Cyclin, N-terminal domain
111112141692093Carboxylesterase family
444444428DNA polymerase family B
233423320ATP synthase subunit C
322343320Peroxidase
612446427Beta-lactamase
345544429C-5 cytosine-specific DNA methylase
23213020202020154Calcineurin-like phosphoesterase
11912111171071Cellulase (glycosyl hydrolase family 5)
555555636tRNA synthetases class II (D, K and N)
31333333325532249Mitochondrial carrier protein
11recA bacterial DNA recombination protein
121212151212984Aminotransferase class I and II
544433225Phosphoribosyl transferase domain
1713151412131498Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11112118Chaperonin 10 Kd subunit
1310151315121088C2 domain
10139111091072PH domain
911111311111480bZIP transcription factor
16161618121418110Aldehyde dehydrogenase family
44424245394738297Fungal Zn(2)-Cys(6) binuclear cluster domain
21161821202019135Cytochrome b5-like Heme/Steroid binding domain
554655636Oxidoreductase NAD-binding domain
21212022232020147SNF2 family N-terminal domain
223222316Ribosomal protein S7p/S5e
18232027212321153Ubiquitin-conjugating enzyme
555657538Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
522222217Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
11Chitin recognition protein
12211119Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
11111117Cupin
3343333222-oxoacid dehydrogenases acyltransferase (catalytic domain)
225222217Catalase
11111117Disintegrin
322232216UDP-glucoronosyl and UDP-glucosyl transferase
656855540Aminotransferase class-III
212222213Ribosomal protein S19
11111117DNA gyrase B
525232221Thiamine pyrophosphate enzyme, central domain
333333321Lyase
119111115Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111218Indole-3-glycerol phosphate synthase
222223215Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
10109988963Kinesin motor domain
29312829293027203DnaJ domain
14141516141416103Proteasome subunit
535684435Major intrinsic protein
11111117ATP synthase
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
222222214Ribosomal protein L22p/L17e
322222215Ribosomal protein L14p/L23e
16151726171712120Ubiquitin family
455655434Cofilin/tropomyosin-type actin-binding protein
22466422614-3-3 protein
11111117Zinc carboxypeptidase
22201928241926158Aldo/keto reductase family
577777848Myb-like DNA-binding domain
555555535Forkhead domain
222222315Ribosomal protein L16p/L10e
222212213Ribosomal protein S14p/S29e
444344326FKBP-type peptidyl-prolyl cis-trans isomerase
433433323Flavodoxin
11111117Calreticulin family
667111210860Common central domain of tyrosinase
576666642Aminotransferase class-V
222322518Ribonucleotide reductase, small chain
54575856545151381DEAD/DEAH box helicase
75807580737372528Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
1211117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
546463432Pyridoxal-dependent decarboxylase conserved domain
544444328Citrate synthase, C-terminal domain
454544531GHMP kinases N terminal domain
465555535Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
666676643Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
1413141513131496NUDIX domain
455674435pfkB family carbohydrate kinase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
7710767751Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
444544429ATP synthase alpha/beta chain, C terminal domain
754535433Calponin homology (CH) domain
222212213Glutamine amidotransferases class-II
212221313Ribosomal protein S15
11211118Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222233216SRF-type transcription factor (DNA-binding and dimerisation domain)
1112141411131489GATA zinc finger
557655538Amino acid permease
538635636Prolyl oligopeptidase family
222222214Ribosomal protein L30p/L7e
977659649Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
544444429Aconitase family (aconitate hydratase)
11111117Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
222212213Nucleoside diphosphate kinase
332432320Tetraspanin family
223222215Ribosomal protein S10p/S20e
434553529Arrestin (or S-antigen), N-terminal domain
111123110Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11112118SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
454545532Polyprenyl synthetase
222232215Hexokinase
1061297141068Dynamin family
311314316Transcription factor TFIID (or TATA-binding protein, TBP)
222222214Rieske [2Fe-2S] domain
112Phytochrome region
767877749Biotin-requiring enzyme
1111116Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333276226FGGY family of carbohydrate kinases, N-terminal domain
666796646Enoyl-CoA hydratase/isomerase
222232215Ribosomal protein S9/S16
322233217Transcription factor TFIIB repeat
556766540Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
6666571349Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
111222211Phosphatidylinositol-specific phospholipase C, X domain
333323320D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333333220Malic enzyme, N-terminal domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
159131317111290Multicopper oxidase
11812101010970WW domain
222223215Ribosomal RNA adenine dimethylase
119107111112111110113783WD domain, G-beta repeat
856454436Heavy-metal-associated domain
243333321Adenylate kinase
222222113Phosphoglucomutase/phosphomannomutase, C-terminal domain
222222315Ribosomal protein S8
222222214Ribosomal protein S11
868566645LIM domain
434343324Regulator of chromosome condensation (RCC1) repeat
222222113Ribosomal protein S13/S18
222222214chorismate binding enzyme
33334332260s Acidic ribosomal protein
434456430Prenyltransferase and squalene oxidase repeat
676755541Protein kinase C terminal domain
11111117Single-strand binding protein family
11Type II/IV secretion system protein
11111117S-adenosylmethionine synthetase, N-terminal domain
1110101115111078Bromodomain
978869855Acyl-CoA dehydrogenase, C-terminal domain
14181592682388318Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
313111111Ribonuclease T2 family
544444631HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
9871419101178Serine carboxypeptidase
10881088860Phosphatidylinositol 3- and 4-kinase
232221214Transketolase, thiamine diphosphate binding domain
542233221Inositol monophosphatase family
565555536Glutaredoxin
222822220Isocitrate lyase family
11311119Serine hydroxymethyltransferase
323332319Iron-containing alcohol dehydrogenase
122222213Ribosomal protein L10
655554434KOW motif
111216Ribosomal protein L34
11111117Ribosomal protein L33
333333220RF-1 domain
21111118Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
76710781055Protein phosphatase 2C
333422320Nucleotidyl transferase
122411213Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
767574541Fatty acid desaturase
866666644MutS domain V
11111117Delta-aminolevulinic acid dehydratase
343243221Arginase family
1366666851MCM P-loop domain
222222214Squalene/phytoene synthase
911111212101075FHA domain
15191513131515105AMP-binding enzyme
1416172011919106G-protein alpha subunit
14131516122114105HMG (high mobility group) box
543435428His Kinase A (phospho-acceptor) domain
232243218Armadillo/beta-catenin-like repeat
15151419151214104Tetratricopeptide repeat
643424326Ion transport protein
412141114DNA gyrase/topoisomerase IV, subunit A
657454435BRCA1 C Terminus (BRCT) domain
555466637Glycosyl transferases group 1
242223217Glycosyl transferase family 2
112SAM domain (Sterile alpha motif)
333344323linker histone H1 and H5 family
11111218Ribosomal protein L7/L12 C-terminal domain
11111117Urease, gamma subunit
333333321CoA-ligase
343343424Phosphopantetheine attachment site
223213215Formyl transferase
9910999964Metallopeptidase family M24
12111129Leucine Rich Repeat
455856336alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
545575637PB1 domain
212222314Staphylococcal nuclease homologue
1312121310121284Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
433333322Zinc finger, ZZ type
12111129HRDC domain
667656642CBS domain
222232215Ribosomal protein L13
222232215Ribosomal protein L4/L1 family
11111117Clp protease
553444429S1 RNA binding domain
11111117HIUase/Transthyretin family
444544429AhpC/TSA family
444334527tRNA synthetases class I (W and Y)
21511212UvrD/REP helicase N-terminal domain
978888856Rhodanese-like domain
222222416Universal stress protein family
912161411111083Acetyltransferase (GNAT) family
11121118SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
355555432tRNA synthetase class II core domain (G, H, P, S and T)
122222213Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1111116Class II Aldolase and Adducin N-terminal domain
544444429Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
644445431Fes/CIP4, and EFC/F-BAR homology domain
222222214IQ calmodulin-binding motif
422212215Phosphoinositide 3-kinase family, accessory domain (PIK domain)
122312213Phospholipase D Active site motif
432333321Regulator of G protein signaling domain
344445428GTPase-activator protein for Ras-like GTPase
1599101210974RasGEF domain
12771099862RasGEF N-terminal motif
1413141413131596RhoGAP domain
13151316201416107RhoGEF domain
344443426SPRY domain
333343322RNA polymerase Rpb1, domain 2
1111127Guanylate kinase
222332216Gelsolin repeat
665646942UBA/TS-N domain
161515159161399PHD-finger
11111218GGL domain
859567545HECT-domain (ubiquitin-transferase)
11211118Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
334345527Ribonuclease III domain
444534428Region in Clathrin and VPS
322333319RanBP1 domain
222322215PPIC-type PPIASE domain
312322215Zn-finger in Ran binding protein and others
1113101111141181Zinc finger C-x8-C-x5-C-x3-H type (and similar)
213B-box zinc finger
245221319Poly(ADP-ribose) polymerase catalytic domain
212222213Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
36243024272520186F-box domain
1011111116Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
222222214Copper fist DNA binding domain
787867750CRAL/TRIO domain
52374589403274369BTB/POZ domain
11Ricin-type beta-trefoil lectin domain
111115Inhibitor of Apoptosis domain
333343322Voltage gated chloride channel
21141419201517120Caspase domain
1111217GDSL-like Lipase/Acylhydrolase
11221119Poly-adenylate binding protein, unique domain
11111128POLO box duplicated region
1611121317151094ABC transporter transmembrane region
433533324FAD binding domain
11Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
21121119HAMP domain
221211211ribosomal L5P family C-terminus
555556637Insulinase (Peptidase family M16)
544455532Dehydrogenase E1 component
11111117Lumazine binding domain
767777647Elongation factor G C-terminus
744445432HMGL-like
444446430DnaJ central domain
433252423Starch binding domain
333343322Ribosomal protein L1p/L10e family
578845542Cation transporting ATPase, C-terminus
688866648Cation transporter/ATPase, N-terminus
11111117dUTPase
444444428Aconitase C-terminal domain
343333322Amino acid kinase family
11111218N-(5'phosphoribosyl)anthranilate (PRA) isomerase
223212214Acyl transferase domain
11111117Urease beta subunit
222222214Dihydrodipicolinate synthetase family
18171715131315108haloacid dehalogenase-like hydrolase
11111117Glycosyl hydrolases family 2
867768648Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11111117Translation initiation factor IF-3, C-terminal domain
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
323333421Peptidase S24-like
11111117Inorganic pyrophosphatase
13910988562Glycosyl hydrolases family 16
744668843Glycosyl hydrolases family 15
174717791475NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
11111319Glycosyl hydrolase family 20, catalytic domain
566553535HhH-GPD superfamily base excision DNA repair protein
21111118AIR carboxylase
11111316961076GMC oxidoreductase
222222214Asparagine synthase
11Fungal cellulose binding domain
666686644Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
221111210Flavin-binding monooxygenase-like
332335322tRNA synthetases class I (E and Q), catalytic domain
11612112tRNA synthetases class I (R)
655445433XPG N-terminal domain
546444431Metallo-beta-lactamase superfamily
11F5/8 type C domain
354365127Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Glycosyl hydrolase family 9
11113119Ferrochelatase
122322214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333422RNB domain
113522216Dioxygenase
117109138765CNH domain
224222216Diacylglycerol kinase catalytic domain
15121314161714101Dual specificity phosphatase, catalytic domain
11121118MyTH4 domain
844964641P21-Rho-binding domain
1212131213121286PX domain
212322416Ras association (RalGDS/AF-6) domain
444444327UBX domain
656556538VHS domain
21111118Phosphoinositide 3-kinase C2
122222314DAHP synthetase I family
333334423Carbon-nitrogen hydrolase
11Geminivirus Rep catalytic domain
11111117Prephenate dehydratase
444444428Syntaxin
445444530Pumilio-family RNA binding repeat
887677750Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222223316Glycoprotease family
1111116Histidinol dehydrogenase
333433221impB/mucB/samB family
11111117Ribosomal L15
333433322Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
222222214RNA pseudouridylate synthase
787677648Histone deacetylase domain
22111119POT family
222222214PWWP domain
15131713111516100SET domain
11112118Isochorismatase family
213Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
575546537XPG I-region
123Acetokinase family
111115DNA photolyase
11111117Cytosol aminopeptidase family, catalytic domain
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
333332320Acyl CoA binding protein
744579541Cullin family
1121128Elongation factor TS
232222316FAD binding domain
146161281461O-methyltransferase domain
445485434EamA-like transporter family
81288119864ThiF family
21121119Ribosomal family S4e
1111116Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
1111116Ammonium Transporter Family
233323420Sulfate permease family
11111117MATH domain
222222214Dehydratase family
122222213Transaldolase/Fructose-6-phosphate aldolase
11111117Mechanosensitive ion channel
222222315GTP cyclohydrolase II
111111173,4-dihydroxy-2-butanone 4-phosphate synthase
544444429Adaptor complexes medium subunit family
7881297859Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
73121418NB-ARC domain
9421213738Glycosyl hydrolase family 3 N terminal domain
11111117Ribosomal protein L44
11111117Sodium:sulfate symporter transmembrane region
11111117DNA-dependent RNA polymerase
11Picornavirus core protein 2A
1111116Glycosyl transferase family 4
111115HCO3- transporter family
222213214Nucleosome assembly protein (NAP)
444444428Synaptobrevin
11111128GMP synthase C terminal domain
322222215Adenosine/AMP deaminase
333333422Oxidoreductase FAD-binding domain
11111128Thioesterase domain
222222214Histidine biosynthesis protein
223333319Glycosyltransferase family 20
11111117UDP-glucose/GDP-mannose dehydrogenase family, central domain