PFAM Domains • Micromonas commoda NOUM17 (RCC 299)
Annotations/GenomesChlre4MicpuC3v2MicpuN3MicpuN3v2Ost9901_3OstRCC809_2Ostta4TotalAnnotation Description
PFAMs
7,5658,0298,0438,4095,4773,1164,87045,509
52585757462944343ATPase family associated with various cellular activities (AAA)
64525653472341336ABC transporter
455553532ATP synthase alpha/beta family, nucleotide-binding domain
9111214EGF-like domain
17212121211418133Elongation factor Tu GTP binding domain
822112117Helix-loop-helix DNA-binding domain
634431425Hsp20/alpha crystallin family
8111010104760Hsp70 protein
13332933211421164KH domain
1113Kunitz/Bovine pancreatic trypsin inhibitor domain
22221110Ribulose bisphosphate carboxylase large chain, catalytic domain
11SH2 domain
33TNFR/NGFR cysteine-rich region
545464634Actin
1079195111571853532Ankyrin repeat
12134424PAN domain
1610111175565ADP-ribosylation factor family
322242318Eukaryotic aspartyl protease
1829253211511131Cyclic nucleotide-binding domain
11Cystatin domain
1111116Cytochrome b(C-terminal)/b6/petD
422211214Cytochrome c
21222110Double-stranded RNA binding motif
101988293351836463EF hand
6333422234Fe-4S binding domain
422321317Fibronectin type III domain
24410Globin
912111133150Glutathione S-transferase, C-terminal domain
355533327Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11774433Homeodomain
7119Kazal-type serine protease inhibitor domain
11132311Kringle domain
1113Laminin B (Domain IV)
112Laminin EGF domain
555555535lactate/malate dehydrogenase, NAD binding domain
1515Lectin C-type domain
11Ligand-gated ion channel
322211112Myosin head (motor domain)
351212121061097Cytochrome P450
42312213213410250931,056Protein kinase domain
161214141181085Pyridine nucleotide-disulphide oxidoreductase
141317151251288Ras family
1213111184766Response regulator receiver domain
212128RNase H
85837779592650459RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
112Serpin (serine protease inhibitor)
33331316Copper/zinc superoxide dismutase (SODC)
4111119Iron/manganese superoxide dismutases, alpha-hairpin domain
1086622135Subtilase family
167761541368Sugar (and other) transporter
1214Sushi repeat (SCR repeat)
26434544251623222Thioredoxin
914101034555Trypsin
311117Thrombospondin type 1 domain
1088884753Tubulin/FtsZ family, GTPase domain
5122111von Willebrand factor type A domain
8131517101670Zinc finger, C2H2 type
79747077481635399Zinc finger, C3HC4 type (RING finger)
121711171021281Zinc knuckle
232232317Ribulose bisphosphate carboxylase, small chain
311117Protein-tyrosine phosphatase
36383435191018190short chain dehydrogenase
131010101211167Zinc-binding dehydrogenase
21111118Thiolase, N-terminal domain
41066821854Beta-ketoacyl synthase, N-terminal domain
1391010856612Fe-2S iron-sulfur cluster binding domain
158101095966Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
11Cytochrome C oxidase subunit II, periplasmic domain
577764642Glutamine amidotransferase class-I
121211111481179TCP-1/cpn60 chaperonin family
11ATP synthase A chain
533311117Glutamine synthetase, catalytic domain
132242216Triosephosphate isomerase
201316151581198E1-E2 ATPase
12416171612513203Core histone H2A/H2B/H3/H4
122211110Copper binding proteins, plastocyanin/azurin family
815151698879Alpha amylase, catalytic domain
1216111086770Bacterial transferase hexapeptide (six repeats)
555591838tRNA synthetases class I (I, L, M and V)
14778105758Cyclin, N-terminal domain
12115Carboxylesterase family
444432324DNA polymerase family B
423341320ATP synthase subunit C
222118Legume lectin domain
1111116Sigma-70 factor, region 1.2
635531427Peroxidase
2131119Beta-lactamase
5128853546C-5 cytosine-specific DNA methylase
25303130201518169Calcineurin-like phosphoesterase
1113Cellulase (glycosyl hydrolase family 5)
566674640tRNA synthetases class II (D, K and N)
44434747421639278Mitochondrial carrier protein
1111116recA bacterial DNA recombination protein
11141314127980Aminotransferase class I and II
988892852Phosphoribosyl transferase domain
11Sigma-54 interaction domain
2427272823722158Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
22222212Phosphoglycerate kinase
122211110Ribosomal protein S4/S9 N-terminal domain
21111118Ribosomal protein S12/S23
433341321Chaperonin 10 Kd subunit
281616191149103C2 domain
576752234PH domain
699953546bZIP transcription factor
857762641Aldehyde dehydrogenase family
14222122191318129Cytochrome b5-like Heme/Steroid binding domain
233321115Oxidoreductase molybdopterin binding domain
8999115859Oxidoreductase NAD-binding domain
1727323021920156SNF2 family N-terminal domain
21111118Ribosomal protein S7p/S5e
2119192013614112Ubiquitin-conjugating enzyme
42113213Isocitrate/isopropylmalate dehydrogenase
222221213Ribosomal Proteins L2, RNA binding domain
344443426Hsp90 protein
222221213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
22Chitin recognition protein
13114Cysteine-rich secretory protein family
2111117Ribosomal protein S3, C-terminal domain
11Cupin
111115Annexin
31116Eukaryotic-type carbonic anhydrase
6444534302-oxoacid dehydrogenases acyltransferase (catalytic domain)
11Catalase
441312Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
746652434Aminotransferase class-III
11111117Ribosomal protein S19
222222214DNA gyrase B
2111117Thiamine pyrophosphate enzyme, central domain
144442423Lyase
112Alpha-2-macroglobulin family
22Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
2111218Ferritin-like domain
65111169Adenylate and Guanylate cyclase catalytic domain
22222212ATP synthase delta (OSCP) subunit
1111217Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Bacterial DNA-binding protein
11111117Indole-3-glycerol phosphate synthase
788821236Pyruvate kinase, barrel domain
3532373915416178Kinesin motor domain
59808082571951428DnaJ domain
1515161618816104Proteasome subunit
112TNF(Tumour Necrosis Factor) family
3115Major intrinsic protein
222222214ATP synthase
21115Glycosyl hydrolase family 1
2646622463'5'-cyclic nucleotide phosphodiesterase
32218Protease inhibitor/seed storage/LTP family
1111116Profilin
333332219Ribosomal protein L22p/L17e
2111117Ribosomal protein L14p/L23e
2018181964590Ubiquitin family
1111116Cofilin/tropomyosin-type actin-binding protein
22223221514-3-3 protein
11114Alkaline phosphatase
865622130Zinc carboxypeptidase
171617171071094Aldo/keto reductase family
33403839341630230Myb-like DNA-binding domain
33Glycosyl hydrolases family 32 N-terminal domain
112Ribosomal protein L16p/L10e
11114Ribosomal protein S14p/S29e
2333293026821170FKBP-type peptidyl-prolyl cis-trans isomerase
555553331Glutathione peroxidase
22223213
1066654441Flavodoxin
11
11Protamine P1
222211111Calreticulin family
122221212Thymidine kinase
69131343452Aminotransferase class-V
222222214Ribonucleotide reductase, small chain
55656868802672434DEAD/DEAH box helicase
831101161161034297667Helicase conserved C-terminal domain
423333321Fructose-bisphosphate aldolase class-I
1211117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
1222119Ribosomal protein L23
43222215Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
221132213Pyridoxal-dependent decarboxylase conserved domain
133321215Citrate synthase, C-terminal domain
678865545GHMP kinases N terminal domain
434444427Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
91114141081076Pyridoxal-phosphate dependent enzyme
112'Paired box' domain
2714181818813116NUDIX domain
711131383560pfkB family carbohydrate kinase
233332319Ribosomal protein L3
333332320Ribosomal protein L11, RNA binding domain
131518181051190Histidine phosphatase superfamily (branch 1)
468832334Rubredoxin
11111117Thymidylate synthase
112Lipoxygenase
444443326ATP synthase alpha/beta chain, C terminal domain
232222215Calponin homology (CH) domain
277754537Glutamine amidotransferases class-II
111115Phosphoenolpyruvate carboxylase
333321217Ribosomal protein S15
14433419'Cold-shock' DNA-binding domain
355553531Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
11111117Ribosomal protein S2
21111118SRF-type transcription factor (DNA-binding and dimerisation domain)
7118994452GATA zinc finger
213211111Amino acid permease
555511123Prolyl oligopeptidase family
22111119Ribosomal protein L30p/L7e
222118Histidine phosphatase superfamily (branch 2)
11Respiratory-chain NADH dehydrogenase, 30 Kd subunit
233332218Aconitase family (aconitate hydratase)
233343321Ribosomal protein S5, N-terminal domain
444431323Nucleoside diphosphate kinase
11Tetraspanin family
32222213Ribosomal protein S10p/S20e
1225Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
233331419Carbohydrate phosphorylase
334332321SecY translocase
11Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222221213Ribosomal protein L6
454443428Polyprenyl synthetase
11Hexokinase
655532228Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
1691112105871Rieske [2Fe-2S] domain
11Phytochrome region
1098885755Biotin-requiring enzyme
23332215Phosphofructokinase
33333318Ribosomal protein S17
354433224FGGY family of carbohydrate kinases, N-terminal domain
112FERM central domain
11114Sodium:dicarboxylate symporter family
655555637Enoyl-CoA hydratase/isomerase
222221213Ribosomal protein S9/S16
233331217Transcription factor TFIIB repeat
68777641Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
365532226Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1111116Phosphatidylinositol-specific phospholipase C, X domain
444433123D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
644453531Malic enzyme, N-terminal domain
222222214PEP-utilising enzyme, mobile domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
22Multicopper oxidase
22Granulin
1726222312614120WW domain
23222213Ribosomal RNA adenine dimethylase
17016715716611657104937WD domain, G-beta repeat
1113ATP synthase, Delta/Epsilon chain, long alpha-helix domain
776751639Heavy-metal-associated domain
879954547Adenylate kinase
211141212Phosphoglucomutase/phosphomannomutase, C-terminal domain
111115Ribosomal protein S8
1111116Ribosomal protein S11
34423319LIM domain
91117181171083Regulator of chromosome condensation (RCC1) repeat
322221214Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
233331318chorismate binding enzyme
34333121960s Acidic ribosomal protein
1111116ATP synthase B/B' CF(0)
11CUB domain
333332320Prenyltransferase and squalene oxidase repeat
2322110Protein kinase C terminal domain
1111116Single-strand binding protein family
11112118S-adenosylmethionine synthetase, N-terminal domain
1011991261168Bromodomain
644452429Acyl-CoA dehydrogenase, C-terminal domain
161213131151181Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
11114Ribonuclease T2 family
246611121HSF-type DNA-binding
444452427SRP54-type protein, GTPase domain
11114Urease alpha-subunit, N-terminal domain
722222219Serine carboxypeptidase
11111117Ribosomal protein L20
998895755Phosphatidylinositol 3- and 4-kinase
11111117Transketolase, thiamine diphosphate binding domain
1333111WHEP-TRS domain
689971646Inositol monophosphatase family
712141523255Glutaredoxin
112Isocitrate lyase family
333333321Serine hydroxymethyltransferase
3211119Iron-containing alcohol dehydrogenase
33232215Ribosomal protein L10
745582839KOW motif
22222212Ribosomal protein L34
22222111Ribosomal protein L33
35443322RF-1 domain
622243221Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
234333321DNA polymerase family A
11112118IMP dehydrogenase / GMP reductase domain
13331112Glucose-6-phosphate dehydrogenase, NAD binding domain
111115ROK family
2315131514713100Protein phosphatase 2C
655533532Nucleotidyl transferase
411118Carbonic anhydrase
433343323Phosphoribulokinase / Uridine kinase family
101514141291387Fatty acid desaturase
510101084956MutS domain V
11111117Delta-aminolevulinic acid dehydratase
1225Arginase family
898894955MCM P-loop domain
233332319Squalene/phytoene synthase
111591193765FHA domain
111516161161085AMP-binding enzyme
36242828211516168Chlorophyll A-B binding protein
912121193561HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
774611228His Kinase A (phospho-acceptor) domain
1611101122355Armadillo/beta-catenin-like repeat
57625967532348369Tetratricopeptide repeat
3222272913513141Ion transport protein
222222315DNA gyrase/topoisomerase IV, subunit A
22Binding-protein-dependent transport system inner membrane component
2525Scavenger receptor cysteine-rich domain
414101255757BRCA1 C Terminus (BRCT) domain
141619191361198Glycosyl transferases group 1
579963443Glycosyl transferase family 2
654711226SAM domain (Sterile alpha motif)
32229linker histone H1 and H5 family
222221213Ribosomal protein L7/L12 C-terminal domain
11114Nitrogen regulatory protein P-II
11114Urease, gamma subunit
222221213CoA-ligase
389963341Phosphopantetheine attachment site
422221316Formyl transferase
799985754Metallopeptidase family M24
9054959825824394Leucine Rich Repeat
1827272715713134alpha/beta hydrolase fold
334442323RNA polymerase Rpb2, domain 6
64424424PB1 domain
222231113Staphylococcal nuclease homologue
946764541Rab-GTPase-TBC domain
11112118Tudor domain
49101073548Zinc finger, ZZ type
31116HRDC domain
1322202116412108CBS domain
33333318Ribosomal protein L13
333331319Ribosomal protein L4/L1 family
888884953Clp protease
510121299865S1 RNA binding domain
1113HIUase/Transthyretin family
735552330AhpC/TSA family
444452427tRNA synthetases class I (W and Y)
2111117UvrD/REP helicase N-terminal domain
1287852648Rhodanese-like domain
38762329Universal stress protein family
32343738221126200Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
21111118AIR synthase related protein, N-terminal domain
899996959tRNA synthetase class II core domain (G, H, P, S and T)
8121212102864SpoU rRNA Methylase family
3115Phage integrase family
355543429Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
10991093555PDZ domain
1111116Class II Aldolase and Adducin N-terminal domain
2215
244421219Diacylglycerol kinase accessory domain
11111117Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
32443446956176IQ calmodulin-binding motif
21111118Phosphoinositide 3-kinase family, accessory domain (PIK domain)
11125Phospholipase D Active site motif
12115RhoGAP domain
52333218SPRY domain
333331319RNA polymerase Rpb1, domain 2
433311116Guanylate kinase
347733330Gelsolin repeat
1522161914712105UBA/TS-N domain
28292828211015159PHD-finger
25661222Filamin/ABP280 repeat
810101081451HECT-domain (ubiquitin-transferase)
151242419Helix-hairpin-helix motif
11111117BRCA2 repeat
122211110MSP (Major sperm protein) domain
31116Ribonuclease III domain
1111116Region in Clathrin and VPS
122221111RanBP1 domain
233332218PPIC-type PPIASE domain
314121512451Zn-finger in Ran binding protein and others
2235303422619168Zinc finger C-x8-C-x5-C-x3-H type (and similar)
144433423B-box zinc finger
221117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
6342334010410202F-box domain
455531225Calpain family cysteine protease
15691085861CRAL/TRIO domain
3133321144BTB/POZ domain
11Ricin-type beta-trefoil lectin domain
556641330Voltage gated chloride channel
21115Caspase domain
214412216GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
1610131275669ABC transporter transmembrane region
11Integrase core domain
433352323FAD binding domain
1113Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116ribosomal L5P family C-terminus
777772542Insulinase (Peptidase family M16)
444441425Dehydrogenase E1 component
11111117Lumazine binding domain
7999106959Elongation factor G C-terminus
333321217HMGL-like
322221214DnaJ central domain
42332115Sulfotransferase domain
109101011445Starch binding domain
344432424Ribosomal protein L1p/L10e family
945553334Cation transporting ATPase, C-terminus
1145554337Cation transporter/ATPase, N-terminus
11OmpA family
11111117dUTPase
22221110Aconitase C-terminal domain
777774746Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
122221212Acyl transferase domain
11114Urease beta subunit
1122118Dihydrodipicolinate synthetase family
43333940321731235haloacid dehalogenase-like hydrolase
1112117Glycosyl hydrolases family 2
711111113Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
212222213Translation initiation factor IF-3, C-terminal domain
11Acylphosphatase
11111117Adenylosuccinate synthetase
11112118Asparaginase, N-terminal
434432323Peptidase S24-like
3111118Inorganic pyrophosphatase
11114Glycosyl hydrolases family 16
415NADH:flavin oxidoreductase / NADH oxidase family
21111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
475642331HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
1113GMC oxidoreductase
244442222Asparagine synthase
111115Fungal cellulose binding domain
11Septin
222222214Homoserine dehydrogenase
123Flavin-binding monooxygenase-like
11111117Glutamyl-tRNAGlu reductase, dimerisation domain
334431321tRNA synthetases class I (E and Q), catalytic domain
122222112tRNA synthetases class I (R)
43335220XPG N-terminal domain
7111413104867Metallo-beta-lactamase superfamily
2212119F5/8 type C domain
2211219Putative esterase
33Glycosyl hydrolase family 9
1111116Ferrochelatase
33333217Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11Electron transfer flavoprotein FAD-binding domain
244442424RNB domain
11Dioxygenase
11Glycosyltransferase family 29 (sialyltransferase)
16563223Diacylglycerol kinase catalytic domain
910101032246Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
3227
345565735PX domain
476652434UBX domain
111115VHS domain
111115Phosphoinositide 3-kinase C2
11DAHP synthetase I family
548821432Carbon-nitrogen hydrolase
11Photosystem I reaction centre subunit VIII
11111117Prephenate dehydratase
434432323Syntaxin
466651533Pentapeptide repeats (8 copies)
422221215Pumilio-family RNA binding repeat
667752538Histone-like transcription factor (CBF/NF-Y) and archaeal histone
222221213Pterin binding enzyme
112231212ER lumen protein retaining receptor
3222211Glycoprotease family
11111117Histidinol dehydrogenase
435541325impB/mucB/samB family
111115Ribonuclease P
11111117
11111117Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
222221213Ribosomal prokaryotic L21 protein
121221110Ribosomal L28 family
22222212Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
233333320Ribulose-phosphate 3 epimerase family
3115Cysteine rich repeat
1514131394876AP2 domain
82016181741699RNA pseudouridylate synthase
13989105761Histone deacetylase domain
111115POT family
443431322PWWP domain
23403740211113185SET domain
52551220Isochorismatase family
5218Permease family
233332218Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
1113ATP P2X receptor
24436423XPG I-region
22Acetokinase family
588863543DNA photolyase
1113NlpC/P60 family
112Nitroreductase family
22222212Cytosol aminopeptidase family, catalytic domain
1616Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
222211212Ribosomal protein S16
463412222Acyl CoA binding protein
344432323Cullin family
222221213Elongation factor TS
3691055442FAD binding domain
22O-methyltransferase domain
714141486