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PFAM Domains • Ostreococcus tauri RCC4221 v3.0
Annotations/GenomesChlre4MicpuC3v2MicpuN3v2Ost9901_3OstRCC809_2Ostta4Ostta4221_3TotalAnnotation Description
PFAMs
7,5658,0298,4095,4773,1164,8707,79645,262
52585746294451337ATPase family associated with various cellular activities (AAA)
64525347234145325ABC transporter
455535431ATP synthase alpha/beta family, nucleotide-binding domain
911213EGF-like domain
17212121141821133Elongation factor Tu GTP binding domain
821121116Helix-loop-helix DNA-binding domain
634314425Hsp20/alpha crystallin family
8111010471060Hsp70 protein
13333321142123158KH domain
112Kunitz/Bovine pancreatic trypsin inhibitor domain
22211210Ribulose bisphosphate carboxylase large chain, catalytic domain
11SH2 domain
33TNFR/NGFR cysteine-rich region
544646736Actin
1079111157185310447Ankyrin repeat
12144122PAN domain
161011755761ADP-ribosylation factor family
322423319Eukaryotic aspartyl protease
1829321151115121Cyclic nucleotide-binding domain
11Cystatin domain
1111116Cytochrome b(C-terminal)/b6/petD
422112113Cytochrome c
2122119Double-stranded RNA binding motif
10198933518362383EF hand
6334221214Fe-4S binding domain
423213116Fibronectin type III domain
246Globin
91211331645Glutathione S-transferase, C-terminal domain
355333325Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11744531Homeodomain
7119Kazal-type serine protease inhibitor domain
11323212Kringle domain
112Laminin B (Domain IV)
112Laminin EGF domain
555555535lactate/malate dehydrogenase, NAD binding domain
1515Lectin C-type domain
112Ligand-gated ion channel
322111111Myosin head (motor domain)
11LNR domain
351212106101095Cytochrome P450
4231221341025093951,019Protein kinase domain
16121411810879Pyridine nucleotide-disulphide oxidoreductase
141315125121384Ras family
121311847863Response regulator receiver domain
221218RNase H
85837959265052434RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
112Serpin (serine protease inhibitor)
33313316Copper/zinc superoxide dismutase (SODC)
4111119Iron/manganese superoxide dismutases, alpha-hairpin domain
1086221231Subtilase family
1676154131172Sugar (and other) transporter
213Sushi repeat (SCR repeat)
26434425162336213Thioredoxin
91410345247Trypsin
31116Thrombospondin type 1 domain
1088847752Tubulin/FtsZ family, GTPase domain
51219von Willebrand factor type A domain
813171016156Zinc finger, C2H2 type
7974774816354333Zinc finger, C3HC4 type (RING finger)
12171710212878Zinc knuckle
232323217Ribulose bisphosphate carboxylase, small chain
31116Protein-tyrosine phosphatase
36383519101823179short chain dehydrogenase
13101012111966Zinc-binding dehydrogenase
21111118Thiolase, N-terminal domain
410682181462Beta-ketoacyl synthase, N-terminal domain
139108567582Fe-2S iron-sulfur cluster binding domain
15810959965Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
11Cytochrome C oxidase subunit II, periplasmic domain
577646641Glutamine amidotransferase class-I
121211148111179TCP-1/cpn60 chaperonin family
11ATP synthase A chain
533111115Glutamine synthetase, catalytic domain
132422216Triosephosphate isomerase
201315158111496E1-E2 ATPase
12416161251313199Core histone H2A/H2B/H3/H4
12211119Copper binding proteins, plastocyanin/azurin family
81516988872Alpha amylase, catalytic domain
121610867665Bacterial transferase hexapeptide (six repeats)
555918639tRNA synthetases class I (I, L, M and V)
14781057859Cyclin, N-terminal domain
12115Carboxylesterase family
444323323DNA polymerase family B
423413320ATP synthase subunit C
221128Legume lectin domain
1111116Sigma-70 factor, region 1.2
635314426Peroxidase
23111210Beta-lactamase
5128535644C-5 cytosine-specific DNA methylase
25303020151819157Calcineurin-like phosphoesterase
1146Cellulase (glycosyl hydrolase family 5)
566746640tRNA synthetases class II (D, K and N)
44434742163939270Mitochondrial carrier protein
1111116recA bacterial DNA recombination protein
11141412791279Aminotransferase class I and II
988928650Phosphoribosyl transferase domain
112Sigma-54 interaction domain
2427282372226157Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
22222212Phosphoglycerate kinase
122111210Ribosomal protein S4/S9 N-terminal domain
21111118Ribosomal protein S12/S23
433413321Chaperonin 10 Kd subunit
2816191149895C2 domain
577522331PH domain
699535845bZIP transcription factor
857626741Aldehyde dehydrogenase family
14222219131820128Cytochrome b5-like Heme/Steroid binding domain
233211214Oxidoreductase molybdopterin binding domain
8991158959Oxidoreductase NAD-binding domain
1727302192023147SNF2 family N-terminal domain
21111118Ribosomal protein S7p/S5e
2119201361414107Ubiquitin-conjugating enzyme
42132214Isocitrate/isopropylmalate dehydrogenase
222212213Ribosomal Proteins L2, RNA binding domain
344434426Hsp90 protein
222212213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
22Chitin recognition protein
13114Cysteine-rich secretory protein family
2111117Ribosomal protein S3, C-terminal domain
11Cupin
111115Annexin
3115Eukaryotic-type carbonic anhydrase
6445344302-oxoacid dehydrogenases acyltransferase (catalytic domain)
11Catalase
413311Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
746524432Aminotransferase class-III
11111117Ribosomal protein S19
222222214DNA gyrase B
2111117Thiamine pyrophosphate enzyme, central domain
144424423Lyase
11Alpha-2-macroglobulin family
22Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
2112118Ferritin-like domain
65111472Adenylate and Guanylate cyclase catalytic domain
22222212ATP synthase delta (OSCP) subunit
1112117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Bacterial DNA-binding protein
11111117Indole-3-glycerol phosphate synthase
788212230Pyruvate kinase, barrel domain
3532391541615156Kinesin motor domain
59808257195159407DnaJ domain
1515161881616104Proteasome subunit
11TNF(Tumour Necrosis Factor) family
3115Major intrinsic protein
222222214ATP synthase
211116Glycosyl hydrolase family 1
2646222423'5'-cyclic nucleotide phosphodiesterase
3216Protease inhibitor/seed storage/LTP family
1111116Profilin
333322319Ribosomal protein L22p/L17e
2111117Ribosomal protein L14p/L23e
201819645981Ubiquitin family
1111127Cofilin/tropomyosin-type actin-binding protein
22232221514-3-3 protein
1113Alkaline phosphatase
866221227Zinc carboxypeptidase
171617107101188Aldo/keto reductase family
33403934163023215Myb-like DNA-binding domain
33Glycosyl hydrolases family 32 N-terminal domain
1113Ribosomal protein L16p/L10e
11114Ribosomal protein S14p/S29e
2333302682123164FKBP-type peptidyl-prolyl cis-trans isomerase
555533127Glutathione peroxidase
2223211
1066544641Flavodoxin
11
11Protamine P1
222111110Calreticulin family
122212212Thymidine kinase
6913434645Aminotransferase class-V
222222214Ribonucleotide reductase, small chain
55656880267272438DEAD/DEAH box helicase
83110116103429796647Helicase conserved C-terminal domain
423333321Fructose-bisphosphate aldolase class-I
1211117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
1221129Ribosomal protein L23
43222215Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
221322214Pyridoxal-dependent decarboxylase conserved domain
11Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
11Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
133212214Citrate synthase, C-terminal domain
678655542GHMP kinases N terminal domain
434444427Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
91114108101072Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
2714181881314112NUDIX domain
71113835855pfkB family carbohydrate kinase
233323319Ribosomal protein L3
333323320Ribosomal protein L11, RNA binding domain
131518105111688Histidine phosphatase superfamily (branch 1)
468323329Rubredoxin
11111117Thymidylate synthase
112Lipoxygenase
444433325ATP synthase alpha/beta chain, C terminal domain
232222114Calponin homology (CH) domain
277545333Glutamine amidotransferases class-II
111115Phosphoenolpyruvate carboxylase
333212317Ribosomal protein S15
14334520'Cold-shock' DNA-binding domain
355535531Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
11111117Ribosomal protein S2
21111118SRF-type transcription factor (DNA-binding and dimerisation domain)
7119944650GATA zinc finger
2121118Amino acid permease
555111220Prolyl oligopeptidase family
221111210Ribosomal protein L30p/L7e
221128Histidine phosphatase superfamily (branch 2)
11Respiratory-chain NADH dehydrogenase, 30 Kd subunit
233322217Aconitase family (aconitate hydratase)
233433321Ribosomal protein S5, N-terminal domain
444313322Nucleoside diphosphate kinase
112Tetraspanin family
11Galactoside-binding lectin
32222213Ribosomal protein S10p/S20e
123Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
233314319Carbohydrate phosphorylase
333323320SecY translocase
11Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222212213Ribosomal protein L6
454434428Polyprenyl synthetase
11Hexokinase
655322326Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
169121058969Rieske [2Fe-2S] domain
11Phytochrome region
1098857754Biotin-requiring enzyme
23322214Phosphofructokinase
33333318Ribosomal protein S17
354332323FGGY family of carbohydrate kinases, N-terminal domain
1113FERM central domain
1113Sodium:dicarboxylate symporter family
655556638Enoyl-CoA hydratase/isomerase
222212213Ribosomal protein S9/S16
233312317Transcription factor TFIIB repeat
68776640Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
365322526Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1111127Phosphatidylinositol-specific phospholipase C, X domain
444331423D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
644535532Malic enzyme, N-terminal domain
222222214PEP-utilising enzyme, mobile domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
22Multicopper oxidase
22Granulin
1726231261417115WW domain
23222213Ribosomal RNA adenine dimethylase
17016716611657104105885WD domain, G-beta repeat
112ATP synthase, Delta/Epsilon chain, long alpha-helix domain
777516639Heavy-metal-associated domain
879545543Adenylate kinase
211412213Phosphoglucomutase/phosphomannomutase, C-terminal domain
111115Ribosomal protein S8
1111116Ribosomal protein S11
34233217LIM domain
91118117101278Regulator of chromosome condensation (RCC1) repeat
322212214Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
233313318chorismate binding enzyme
34331231960s Acidic ribosomal protein
1111116ATP synthase B/B' CF(0)
11CUB domain
333323320Prenyltransferase and squalene oxidase repeat
2321210Protein kinase C terminal domain
1111116Single-strand binding protein family
11121118S-adenosylmethionine synthetase, N-terminal domain
10119126111271Bromodomain
644524328Acyl-CoA dehydrogenase, C-terminal domain
161213115111179Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
111115Ribonuclease T2 family
246111116HSF-type DNA-binding
444524427SRP54-type protein, GTPase domain
11114Urease alpha-subunit, N-terminal domain
722222219Serine carboxypeptidase
11111117Ribosomal protein L20
998957956Phosphatidylinositol 3- and 4-kinase
11111117Transketolase, thiamine diphosphate binding domain
133119WHEP-TRS domain
689716845Inositol monophosphatase family
71215232546Glutaredoxin
112Isocitrate lyase family
333333321Serine hydroxymethyltransferase
3211119Iron-containing alcohol dehydrogenase
33322316Ribosomal protein L10
745828640KOW motif
22222212Ribosomal protein L34
22221211Ribosomal protein L33
35433422RF-1 domain
622432221Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
233333320DNA polymerase family A
11121118IMP dehydrogenase / GMP reductase domain
13311110Glucose-6-phosphate dehydrogenase, NAD binding domain
111115ROK family
2315151471314101Protein phosphatase 2C
655335532Nucleotidyl transferase
4111119Carbonic anhydrase
433433323Phosphoribulokinase / Uridine kinase family
101514129131386Fatty acid desaturase
51010849955MutS domain V
11111117Delta-aminolevulinic acid dehydratase
123Arginase family
898949956MCM P-loop domain
233323420Squalene/phytoene synthase
1115119371268FHA domain
111516116101584AMP-binding enzyme
36242821151624164Chlorophyll A-B binding protein
91211935857HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
776112226His Kinase A (phospho-acceptor) domain
161111223247Armadillo/beta-catenin-like repeat
57626753234816326Tetratricopeptide repeat
3222291351318132Ion transport protein
222223215DNA gyrase/topoisomerase IV, subunit A
22Binding-protein-dependent transport system inner membrane component
2525Scavenger receptor cysteine-rich domain
41412557754BRCA1 C Terminus (BRCT) domain
141619136111594Glycosyl transferases group 1
579634438Glycosyl transferase family 2
657112224SAM domain (Sterile alpha motif)
32218linker histone H1 and H5 family
222212213Ribosomal protein L7/L12 C-terminal domain
1113Nitrogen regulatory protein P-II
11114Urease, gamma subunit
222212213CoA-ligase
3896331143Phosphopantetheine attachment site
422213216Formyl transferase
799857954Metallopeptidase family M24
905498258247306Leucine Rich Repeat
182727157131108alpha/beta hydrolase fold
334423322RNA polymerase Rpb2, domain 6
64244424PB1 domain
222311213Staphylococcal nuclease homologue
947645944Rab-GTPase-TBC domain
11121118Tudor domain
4910735644Zinc finger, ZZ type
31127HRDC domain
1322211641214102CBS domain
33333318Ribosomal protein L13
333313319Ribosomal protein L4/L1 family
888849853Clp protease
510129981164S1 RNA binding domain
112HIUase/Transthyretin family
735523328AhpC/TSA family
444524427tRNA synthetases class I (W and Y)
2111128UvrD/REP helicase N-terminal domain
12885261859Rhodanese-like domain
38623527Universal stress protein family
32343822112629192Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
21111129AIR synthase related protein, N-terminal domain
899969757tRNA synthetase class II core domain (G, H, P, S and T)
812121028961SpoU rRNA Methylase family
31127Phage integrase family
355434428Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
10910935349PDZ domain
1111116Class II Aldolase and Adducin N-terminal domain
2215
244212217Diacylglycerol kinase accessory domain
11111128Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
3244469563145IQ calmodulin-binding motif
21111118Phosphoinositide 3-kinase family, accessory domain (PIK domain)
1124Phospholipase D Active site motif
1214RhoGAP domain
52332217SPRY domain
333313319RNA polymerase Rpb1, domain 2
433111114Guanylate kinase
347333326Gelsolin repeat
152219147121099UBA/TS-N domain
28292821101512143PHD-finger
25612319Filamin/ABP280 repeat
81010814647HECT-domain (ubiquitin-transferase)
152424119Helix-hairpin-helix motif
1111116BRCA2 repeat
12211119MSP (Major sperm protein) domain
31127Ribonuclease III domain
1111149Region in Clathrin and VPS
122211312RanBP1 domain
233322318PPIC-type PPIASE domain
31415124443Zn-finger in Ran binding protein and others
2235342261913151Zinc finger C-x8-C-x5-C-x3-H type (and similar)
144334322B-box zinc finger
221117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
634240104104173F-box domain
455312222Calpain family cysteine protease
156108581163CRAL/TRIO domain
3133211243BTB/POZ domain
11Ricin-type beta-trefoil lectin domain
556413428Voltage gated chloride channel
21115Caspase domain
214122214GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
161012756763ABC transporter transmembrane region
123Integrase core domain
433523424FAD binding domain
1113Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116ribosomal L5P family C-terminus
777725742Insulinase (Peptidase family M16)
444414425Dehydrogenase E1 component
11111117Lumazine binding domain
7991069959Elongation factor G C-terminus
333212216HMGL-like
322212214DnaJ central domain
42321416Sulfotransferase domain
10910114742Starch binding domain
344324525Ribosomal protein L1p/L10e family
945533534Cation transporting ATPase, C-terminus
1145543739Cation transporter/ATPase, N-terminus
11OmpA family
11111117dUTPase
2221119Aconitase C-terminal domain
777747847Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
122212212Acyl transferase domain
11114Urease beta subunit
1121117Dihydrodipicolinate synthetase family
43334032173112208haloacid dehalogenase-like hydrolase
1121117Glycosyl hydrolases family 2
711111113Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
212222213Translation initiation factor IF-3, C-terminal domain
11Acylphosphatase
11111117Adenylosuccinate synthetase
11121118Asparaginase, N-terminal
434323221Peptidase S24-like
3111118Inorganic pyrophosphatase
11114Glycosyl hydrolases family 16
415NADH:flavin oxidoreductase / NADH oxidase family
21111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
476423531HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
112GMC oxidoreductase
244422422Asparagine synthase
111115Fungal cellulose binding domain
11Septin
222222214Homoserine dehydrogenase
1225Flavin-binding monooxygenase-like
11111117Glutamyl-tRNAGlu reductase, dimerisation domain
334313320tRNA synthetases class I (E and Q), catalytic domain
122221212tRNA synthetases class I (R)
43352522XPG N-terminal domain
711131048760Metallo-beta-lactamase superfamily
2221119F5/8 type C domain
2212119Putative esterase
33Glycosyl hydrolase family 9
1111116Ferrochelatase
33332216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11Electron transfer flavoprotein FAD-binding domain
244424424RNB domain
11Dioxygenase
11Glycosyltransferase family 29 (sialyltransferase)
16632321Diacylglycerol kinase catalytic domain
91010322844Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
3227
345657737PX domain
476524432UBX domain
111115VHS domain
111115Phosphoinositide 3-kinase C2
11DAHP synthetase I family
548214428Carbon-nitrogen hydrolase
11Photosystem I reaction centre subunit VIII
11111117Prephenate dehydratase
434323322Syntaxin
466515431Pentapeptide repeats (8 copies)
422212215Pumilio-family RNA binding repeat
667525637Histone-like transcription factor (CBF/NF-Y) and archaeal histone
222212213Pterin binding enzyme
112312212ER lumen protein retaining receptor
3222211Glycoprotease family
11111128Histidinol dehydrogenase
435413424impB/mucB/samB family
111115Ribonuclease P
1111116
11111117Ribosomal L15
1111149Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
222212213Ribosomal prokaryotic L21 protein
122211211Ribosomal L28 family
22222212Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
233333320Ribulose-phosphate 3 epimerase family
3115Cysteine rich repeat
151413948871AP2 domain
82018174161699RNA pseudouridylate synthase
13991057861Histone deacetylase domain
33Glycosyltransferase family 10 (fucosyltransferase) C-term
111115POT family
444313524PWWP domain
23404021111326174SET domain
52512419Isochorismatase family
516Permease family
233322318Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
11125ATP P2X receptor
24364423XPG I-region
22Acetokinase family
588635641DNA photolyase
112NlpC/P60 family
112Nitroreductase family
22222212Cytosol aminopeptidase family, catalytic domain
1616Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
222112212Ribosomal protein S16