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PFAM Domains • Calocera cornea v1.0
Annotations/GenomesAgabi_varbisH97_2Aurde1Botbo1Calco1Copci1Dacsp1Lacbi2Phchr1PosplRSB12_1Schco2SerlaS7_9_2Treme1Walse1TotalAnnotation Description
PFAMs
6,9509,0057,6247,6786,8958,6565,9277,7468,4927,5265,5654,82486,888
384239434139384243423631474ATPase family associated with various cellular activities (AAA)
364540464149504646383424495ABC transporter
44444444444448ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
161915151616151415141315183Elongation factor Tu GTP binding domain
99101010201111121187128Helix-loop-helix DNA-binding domain
45474106596868Hsp20/alpha crystallin family
717138915797877114Hsp70 protein
999888899878100KH domain
111111111110SH2 domain
302421312240222126242220303SH3 domain
11TNFR/NGFR cysteine-rich region
11171312915610111099132Actin
1814921932095222945511514572Ankyrin repeat
22PAN domain
58787967778786ADP-ribosylation factor family
1531261328245345292992304Eukaryotic aspartyl protease
34232334333235Cyclic nucleotide-binding domain
123Cytochrome b(C-terminal)/b6/petD
1225Cytochrome b/b6/petB
11111111121113Cytochrome c
61356311391281178Double-stranded RNA binding motif
192016191518241520161514211EF hand
11122211211154Fe-4S binding domain
1111111111111Fibronectin type III domain
1113Globin
2723181415131419142225186Glutathione S-transferase, C-terminal domain
21131511111119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
7125107107811104293Homeodomain
1121117Laminin EGF domain
23222222222225lactate/malate dehydrogenase, NAD binding domain
55554754577665Myosin head (motor domain)
11615812913411886113197114152851,330Cytochrome P450
13637916613612021712015016114396781,902Protein kinase domain
13142117141416171116117171Pyridine nucleotide-disulphide oxidoreductase
252831322753282626232421344Ras family
6131081179912997110Response regulator receiver domain
78321841932957RNase H
606863645771596270655960758RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1211712125Reverse transcriptase (RNA-dependent DNA polymerase)
111111111110Copper/zinc superoxide dismutase (SODC)
13222332321226Iron/manganese superoxide dismutases, alpha-hairpin domain
7154123542323565Subtilase family
272273207621473041362513431Sugar (and other) transporter
121212910101010131089125Thioredoxin
56555655554561Tubulin/FtsZ family, GTPase domain
3613642331133von Willebrand factor type A domain
378141603363529598382827653Zinc finger, C2H2 type
436147484266265566463724561Zinc finger, C3HC4 type (RING finger)
8317132110347195241051508631Zinc knuckle
23222222232226Protein-tyrosine phosphatase
5471130491154975105110753433900short chain dehydrogenase
274053294631575847411715461Zinc-binding dehydrogenase
65545465443253Thiolase, N-terminal domain
382225273111147Beta-ketoacyl synthase, N-terminal domain
342337333344422Fe-2S iron-sulfur cluster binding domain
33Papain family cysteine protease
11112121111114Enolase, C-terminal TIM barrel domain
224Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
9988713798888102Glutamine amidotransferase class-I
101110101013991010109121TCP-1/cpn60 chaperonin family
112ATP synthase A chain
46343744332245Glutamine synthetase, catalytic domain
11111111111112Triosephosphate isomerase
71213111020111391199135E1-E2 ATPase
161212161224161522181119193Core histone H2A/H2B/H3/H4
211329Copper binding proteins, plastocyanin/azurin family
649810986126987Alpha amylase, catalytic domain
55565655653157Phorbol esters/diacylglycerol binding domain (C1 domain)
24757444438759Bacterial transferase hexapeptide (six repeats)
34333362333339tRNA synthetases class I (I, L, M and V)
10151112111414111417910148Cyclin, N-terminal domain
19922192215916233052191Carboxylesterase family
54444441444446DNA polymerase family B
33434434333340ATP synthase subunit C
511413172212140Peroxidase
3121521223634264Beta-lactamase
4634345454143C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
223131313133192424261816306Calcineurin-like phosphoesterase
811101111981271465112Cellulase (glycosyl hydrolase family 5)
55555566665564tRNA synthetases class II (D, K and N)
343736363641343736373330427Mitochondrial carrier protein
131215161612131916151611174Aminotransferase class I and II
55767856666774Phosphoribosyl transferase domain
131414141813141414131210163Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111111111112Phosphoglycerate kinase
22222322222225Ribosomal protein S4/S9 N-terminal domain
22222222222224Ribosomal protein S12/S23
22111111111114Chaperonin 10 Kd subunit
14451117918161519131210199C2 domain
202120191824181920171720233PH domain
55465784675668bZIP transcription factor
2421131211151919161698183Aldehyde dehydrogenase family
5015057424873354488445334718Fungal Zn(2)-Cys(6) binuclear cluster domain
202620241923232524261716263Cytochrome b5-like Heme/Steroid binding domain
12213441422Oxidoreductase molybdopterin binding domain
611810118131011857108Oxidoreductase NAD-binding domain
192129262122122422221914251SNF2 family N-terminal domain
22222322222225Ribosomal protein S7p/S5e
182318232023202221202016244Ubiquitin-conjugating enzyme
66757655555567Isocitrate/isopropylmalate dehydrogenase
22122222222223Ribosomal Proteins L2, RNA binding domain
22822232322131Hsp90 protein
22222222222224Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111111111Dihydrofolate reductase
11Chitin recognition protein
4722191252338Cysteine-rich secretory protein family
11111121111113Ribosomal protein S3, C-terminal domain
212111972228Cupin
13217Annexin
88Eukaryotic-type carbonic anhydrase
134Chalcone and stilbene synthases, N-terminal domain
333333233333352-oxoacid dehydrogenases acyltransferase (catalytic domain)
33243154241133Catalase
111111111110Disintegrin
2012118143UDP-glucoronosyl and UDP-glucosyl transferase
56555655556866Aminotransferase class-III
22221422222225Ribosomal protein S19
11111111111112DNA gyrase B
32242333432233Thiamine pyrophosphate enzyme, central domain
33333433343338Lyase
22222321212223Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111111111112Adenylate and Guanylate cyclase catalytic domain
11111111111112ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
11121212211116Indole-3-glycerol phosphate synthase
24222112319Aromatic amino acid lyase
11111111111112Pyruvate kinase, barrel domain
911889101081010128113Kinesin motor domain
312724322736223227282526337DnaJ domain
141414141414141314151414168Proteasome subunit
419725782331364Major intrinsic protein
11111111111112ATP synthase
1412122331121Glycosyl hydrolase family 1
111111111111123'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
1121111111112Profilin
22212122121119Ribosomal protein L22p/L17e
22222222222224Ribosomal protein L14p/L23e
131713171121121913161010172Ubiquitin family
56756545755464Cofilin/tropomyosin-type actin-binding protein
1112112322111814-3-3 protein
322232213222Alkaline phosphatase
111112119Zinc carboxypeptidase
213962225724535960432317480Aldo/keto reductase family
13141013121413131111118143Myb-like DNA-binding domain
5525255584450Forkhead domain
11226Glycosyl hydrolases family 32 N-terminal domain
11111111111112Ribosomal protein L16p/L10e
12222212222222Ribosomal protein S14p/S29e
55836633533353FKBP-type peptidyl-prolyl cis-trans isomerase
1111111112112Glutathione peroxidase
22222221211221
786695136754480Flavodoxin
11111111111112Calreticulin family
6521933113447Common central domain of tyrosinase
75876636984574Aminotransferase class-V
21121142312121Ribonucleotide reductase, small chain
475846513980444867523734603DEAD/DEAH box helicase
77103859268115598298916556991Helicase conserved C-terminal domain
11114Fructose-bisphosphate aldolase class-I
1211111111112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
21122222222121Ribosomal protein L23
11111111111112Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111111112214Ribosomal protein L5
47655434755358Pyridoxal-dependent decarboxylase conserved domain
33153334331133Citrate synthase, C-terminal domain
45544645554556GHMP kinases N terminal domain
75666666565468Biotin carboxylase, N-terminal domain
11111111111112Tryptophan synthase alpha chain
710117971098967100Pyridoxal-phosphate dependent enzyme
12121317111411141417109154NUDIX domain
35442523644446pfkB family carbohydrate kinase
627366383751Glycosyl hydrolases family 28
22222222322225Ribosomal protein L3
22221222222223Ribosomal protein L11, RNA binding domain
910879769979898Histidine phosphatase superfamily (branch 1)
11111111111112Thymidylate synthase
11Lipoxygenase
44444444444448ATP synthase alpha/beta chain, C terminal domain
44645544554454Calponin homology (CH) domain
56445544564355Glutamine amidotransferases class-II
12222212122221Ribosomal protein S15
66'Cold-shock' DNA-binding domain
34556332115350Thaumatin family
11111111111112Fructose-1-6-bisphosphatase, N-terminal domain
11111111111112Ribonucleotide reductase, all-alpha domain
22422222222226Ribosomal protein S2
22212321422225SRF-type transcription factor (DNA-binding and dimerisation domain)
1191411141279121097125GATA zinc finger
1531201319231625212559222Amino acid permease
112Bacterial regulatory proteins, crp family
5610588257102371Prolyl oligopeptidase family
12111111112114Ribosomal protein L30p/L7e
8128510881291154100Histidine phosphatase superfamily (branch 2)
11111111111112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
54545844444455Aconitase family (aconitate hydratase)
211263635139Glycosyl hydrolase family 10
3513231121123Glycosyl hydrolases family 17
12222222221222Ribosomal protein S5, N-terminal domain
22222222211222Nucleoside diphosphate kinase
2133212115Tetraspanin family
224Galactoside-binding lectin
2122222211219Ribosomal protein S10p/S20e
1113384532132Arrestin (or S-antigen), N-terminal domain
11121111111113Phosphoglucose isomerase
1111111111111Carbohydrate phosphorylase
11111111111112SecY translocase
1111511211116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222222224Ribosomal protein L6
34543835663353Polyprenyl synthetase
23222222222225Hexokinase
78844856993374Dynamin family
11111211111113Transcription factor TFIID (or TATA-binding protein, TBP)
33344534344141Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11Phytochrome region
325Proton-conducting membrane transporter
107898888986594Biotin-requiring enzyme
11111111111112Phosphofructokinase
22221222212222Ribosomal protein S17
11111211111113Hydroxymethylglutaryl-coenzyme A reductase
32333233332232FGGY family of carbohydrate kinases, N-terminal domain
79776889984486Enoyl-CoA hydratase/isomerase
32422212222226Ribosomal protein S9/S16
22232322221225Transcription factor TFIIB repeat
46756758674570Cytidine and deoxycytidylate deaminase zinc-binding region
2111111111112Molybdopterin oxidoreductase
1071278216151913273193Chromo (CHRromatin Organisation MOdifier) domain
31232411421226Phosphatidylinositol-specific phospholipase C, Y domain
32232411321226Phosphatidylinositol-specific phospholipase C, X domain
6711610468769484D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
32121633332231Malic enzyme, N-terminal domain
112111222121176-phosphogluconate dehydrogenase, C-terminal domain
13551751354664285Multicopper oxidase
9141212108679885108WW domain
22121212221220Ribosomal RNA adenine dimethylase
11416013112411122111611713013797941,552WD domain, G-beta repeat
23523344433339Heavy-metal-associated domain
33333333333336Adenylate kinase
22322222122224Phosphoglucomutase/phosphomannomutase, C-terminal domain
11121121111215Ribosomal protein S8
12121211121217Ribosomal protein S11
69556754574265LIM domain
44Matrixin
34333333322133Regulator of chromosome condensation (RCC1) repeat
22322222222225Ribosomal protein S13/S18
1214NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
32222222222225chorismate binding enzyme
3333343233333660s Acidic ribosomal protein
45444644444451Prenyltransferase and squalene oxidase repeat
57474647774668Protein kinase C terminal domain
111111111110Single-strand binding protein family
11111111111112S-adenosylmethionine synthetase, N-terminal domain
1011141111101011111098126Bromodomain
811697898997394Acyl-CoA dehydrogenase, C-terminal domain
161514151416141417151812180Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
234232212122Ribonuclease T2 family
66535442435451HSF-type DNA-binding
22222222222224SRP54-type protein, GTPase domain
11111111211113Urease alpha-subunit, N-terminal domain
1471451272115101232122Serine carboxypeptidase
99988878888696Phosphatidylinositol 3- and 4-kinase
21121222322222Transketolase, thiamine diphosphate binding domain
2261112Glycosyl hydrolases family 11
13111111111WHEP-TRS domain
32222222622128Inositol monophosphatase family
55444534544350Glutaredoxin
63232223331131Isocitrate lyase family
24111111111116Serine hydroxymethyltransferase
32724233421235Iron-containing alcohol dehydrogenase
22212232222224Ribosomal protein L10
25344865545455KOW motif
12111111110Ribosomal protein L34
11Ribosomal protein L33
24232222333331RF-1 domain
151423414227Sodium:solute symporter family
1111111111111Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
12111111111113IMP dehydrogenase / GMP reductase domain
11111111211113Glucose-6-phosphate dehydrogenase, NAD binding domain
9778895613105592Protein phosphatase 2C
23313312132226Nucleotidyl transferase
3647742242142Carbonic anhydrase
1111111112112Phosphoribulokinase / Uridine kinase family
109685861213125498Fatty acid desaturase
66766668676575MutS domain V
11111111111112Delta-aminolevulinic acid dehydratase
22424235431234Arginase family
66666666666672MCM P-loop domain
11212211112116Squalene/phytoene synthase
88586118109107696FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
30413330292930353149810355AMP-binding enzyme
137616549915151433155G-protein alpha subunit
121392610161526351567190HMG (high mobility group) box
1113NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1113Cytochrome c oxidase subunit III
38747465947367His Kinase A (phospho-acceptor) domain
45223224432336Armadillo/beta-catenin-like repeat
264533293273233427351620393Tetratricopeptide repeat
43534214323135Ion transport protein
11121111111113DNA gyrase/topoisomerase IV, subunit A
8101110101269109107112BRCA1 C Terminus (BRCT) domain
65767746767472Glycosyl transferases group 1
35343364452143Glycosyl transferase family 2
613213319SAM domain (Sterile alpha motif)
33343423341134linker histone H1 and H5 family
11111111111112Ribosomal protein L7/L12 C-terminal domain
141410Pectate lyase
113112312ribonuclease
11111111211113Urease, gamma subunit
35334333333339CoA-ligase
41456456616242395Phosphopantetheine attachment site
22222212223325Formyl transferase
10899109911111096111Metallopeptidase family M24
171413151216141516141911176Leucine Rich Repeat
414046343320233249401218388alpha/beta hydrolase fold
33333333333336RNA polymerase Rpb2, domain 6
55555735