PFAM Domains • Caulochytrium protostelioides ATCC 52028 v1.0
Annotations/GenomesBatde5Catan1Caupr1Caupr_SCcombGanpr1PirE2_1TotalAnnotation Description
14277 transmembrane receptor (rhodopsin family)
4582310777 transmembrane sweet-taste receptor of 3 GCPR
405041195640246ATPase family associated with various cellular activities (AAA)
6091281264144399ABC transporter
44422420ATP synthase alpha/beta family, nucleotide-binding domain
31116EGF-like domain
151914916982Elongation factor Tu GTP binding domain
912626742Helix-loop-helix DNA-binding domain
2313743261Hsp20/alpha crystallin family
686492457Hsp70 protein
998612751KH domain
112SH2 domain
454738917285396SH3 domain
24422751987091,005Ankyrin repeat
21227PAN domain
8156381353ADP-ribosylation factor family
431536159Eukaryotic aspartyl protease
14266315872Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11114Cytochrome c
3224112Double-stranded RNA binding motif
31341783127148EF hand
2112284Fe-4S binding domain
26212114Fibronectin type III domain
334217332Glutathione S-transferase, C-terminal domain
1213310Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Laminin EGF domain
23223214lactate/malate dehydrogenase, NAD binding domain
426Lectin C-type domain
7129381352Myosin head (motor domain)
9253364104Cytochrome P450
14816812963234152894Protein kinase domain
9128522359Pyridine nucleotide-disulphide oxidoreductase
292920132527143Ras family
1710115346Response regulator receiver domain
243348RNase H
696948178076359RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
71219Reverse transcriptase (RNA-dependent DNA polymerase)
21315Serpin (serine protease inhibitor)
111137Copper/zinc superoxide dismutase (SODC)
411219Iron/manganese superoxide dismutases, alpha-hairpin domain
57143680169Subtilase family
51132122558Sugar (and other) transporter
112Trefoil (P-type) domain
11Thrombospondin type 1 domain
87657639Tubulin/FtsZ family, GTPase domain
222141232von Willebrand factor type A domain
44von Willebrand factor type D domain
4733421710447290Zinc finger, C2H2 type
395630910748289Zinc finger, C3HC4 type (RING finger)
1046742220109Zinc knuckle
22214415Protein-tyrosine phosphatase
223212411612198short chain dehydrogenase
8137340677Zinc-binding dehydrogenase
65438127Thiolase, N-terminal domain
22131523Beta-ketoacyl synthase, N-terminal domain
44362192Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
111115Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
78639841Glutamine amidotransferase class-I
10119691156TCP-1/cpn60 chaperonin family
11ATP synthase A chain
21228217Glutamine synthetase, catalytic domain
111115Triosephosphate isomerase
17271392612104E1-E2 ATPase
7105415647Core histone H2A/H2B/H3/H4
33Bacterial regulatory helix-turn-helix protein, lysR family
11Copper binding proteins, plastocyanin/azurin family
14532722Alpha amylase, catalytic domain
53628832Phorbol esters/diacylglycerol binding domain (C1 domain)
85736837Bacterial transferase hexapeptide (six repeats)
54322420tRNA synthetases class I (I, L, M and V)
16128621871Cyclin, N-terminal domain
211184062Carboxylesterase family
35425625DNA polymerase family B
35323319ATP synthase subunit C
11Legume lectin domain
5712217C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
24261682540139Calcineurin-like phosphoesterase
1183646Cellulase (glycosyl hydrolase family 5)
57336226tRNA synthetases class II (D, K and N)
324032114911175Mitochondrial carrier protein
913106162680Aminotransferase class I and II
81062111047Phosphoribosyl transferase domain
1417113141574Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111127Phosphoglycerate kinase
23212111Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
415Bacterial regulatory helix-turn-helix proteins, AraC family
11114Chaperonin 10 Kd subunit
103216122231123C2 domain
16241461727104PH domain
517616751bZIP transcription factor
1186624156Aldehyde dehydrogenase family
158126813116Fungal Zn(2)-Cys(6) binuclear cluster domain
2227176408120Cytochrome b5-like Heme/Steroid binding domain
145Oxidoreductase molybdopterin binding domain
5119311140Oxidoreductase NAD-binding domain
1516147261896SNF2 family N-terminal domain
22212110Ribosomal protein S7p/S5e
232220132914121Ubiquitin-conjugating enzyme
46536327Isocitrate/isopropylmalate dehydrogenase
22222111Ribosomal Proteins L2, RNA binding domain
22213313Hsp90 protein
122139Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111115Dihydrofolate reductase
15611223255Chitin recognition protein
11155242360Cysteine-rich secretory protein family
111216Ribosomal protein S3, C-terminal domain
164112Eukaryotic-type carbonic anhydrase
11Bacterial regulatory proteins, luxR family
33323142-oxoacid dehydrogenases acyltransferase (catalytic domain)
1124UDP-glucoronosyl and UDP-glucosyl transferase
23318118Aminotransferase class-III
22212110Ribosomal protein S19
1411119DNA gyrase B
11349Thiamine pyrophosphate enzyme, central domain
221121422Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
235Sodium:neurotransmitter symporter family
112Ferritin-like domain
61326229Adenylate and Guanylate cyclase catalytic domain
111115ATP synthase delta (OSCP) subunit
111115Orotidine 5'-phosphate decarboxylase / HUMPS family
111126Indole-3-glycerol phosphate synthase
11Aromatic amino acid lyase
32223214Pyruvate kinase, barrel domain
17251892224115Kinesin motor domain
36302883326161DnaJ domain
1416146161177Proteasome subunit
32314114Major intrinsic protein
1111116ATP synthase
111618Glycosyl hydrolase family 1
894257353'5'-cyclic nucleotide phosphodiesterase
2111218Ribosomal protein L22p/L17e
22222111Ribosomal protein L14p/L23e
1324106201588Ubiquitin family
56526327Cofilin/tropomyosin-type actin-binding protein
111121714-3-3 protein
317424Alkaline phosphatase
4127326Zinc carboxypeptidase
5821371972Aldo/keto reductase family
16974131261Myb-like DNA-binding domain
2514416Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
11114Ribosomal protein L16p/L10e
12222110Ribosomal protein S14p/S29e
64416526FKBP-type peptidyl-prolyl cis-trans isomerase
11114513Glutathione peroxidase
31111310Calreticulin family
10183233Common central domain of tyrosinase
11Thymidine kinase
41249332Aminotransferase class-V
221117Ribonucleotide reductase, small chain
485142244535245DEAD/DEAH box helicase
667764317955372Helicase conserved C-terminal domain
121116Fructose-bisphosphate aldolase class-I
111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222219Ribosomal protein L23
1111217Pyridoxal-dependent decarboxylase, C-terminal sheet domain
121127Ribosomal protein L5
23229321Pyridoxal-dependent decarboxylase conserved domain
44112113Citrate synthase, C-terminal domain
65525427GHMP kinases N terminal domain
57429330Biotin carboxylase, N-terminal domain
111126Tryptophan synthase alpha chain
6954131148Pyridoxal-phosphate dependent enzyme
81282281270NUDIX domain
27124218pfkB family carbohydrate kinase
13114Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
23222112Ribosomal protein L3
222219Ribosomal protein L11, RNA binding domain
494111534Histidine phosphatase superfamily (branch 1)
11Chloramphenicol acetyltransferase
1111116Thymidylate synthase
44412419ATP synthase alpha/beta chain, C terminal domain
6694101045Calponin homology (CH) domain
34546325Glutamine amidotransferases class-II
11Phosphoenolpyruvate carboxylase
22212211Ribosomal protein S15
211127'Cold-shock' DNA-binding domain
11Thaumatin family
111115Fructose-1-6-bisphosphatase, N-terminal domain
12126Ribonucleotide reductase, all-alpha domain
2222210Ribosomal protein S2
16211213SRF-type transcription factor (DNA-binding and dimerisation domain)
71672171261GATA zinc finger
8216238176Amino acid permease
717416338Prolyl oligopeptidase family
1111127Ribosomal protein L30p/L7e
14116518Histidine phosphatase superfamily (branch 2)
11114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
25334421Aconitase family (aconitate hydratase)
12829Glycosyl hydrolase family 10
22222111Ribosomal protein S5, N-terminal domain
46345224Nucleoside diphosphate kinase
3222211Tetraspanin family
121116Ribosomal protein S10p/S20e
33118Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
11114Carbohydrate phosphorylase
1111116SecY translocase
121116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222111Ribosomal protein L6
3413213Polyprenyl synthetase
43335422Dynamin family
111115Biopterin-dependent aromatic amino acid hydroxylase
1111127Transcription factor TFIID (or TATA-binding protein, TBP)
22311018Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
22Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
44Proton-conducting membrane transporter
79539134Biotin-requiring enzyme
23212111Ribosomal protein S17
2114Hydroxymethylglutaryl-coenzyme A reductase
4214213FGGY family of carbohydrate kinases, N-terminal domain
111227FERM central domain
1214Sodium:dicarboxylate symporter family
213MerR family regulatory protein
69623861Enoyl-CoA hydratase/isomerase
2221119Ribosomal protein S9/S16
2321311Transcription factor TFIIB repeat
675210232Cytidine and deoxycytidylate deaminase zinc-binding region
22116Molybdopterin oxidoreductase
51631101752Chromo (CHRromatin Organisation MOdifier) domain
111115Phosphatidylinositol-specific phospholipase C, Y domain
1111138Phosphatidylinositol-specific phospholipase C, X domain
22110318D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
224Malic enzyme, N-terminal domain
123PEP-utilising enzyme, mobile domain
11Bacterial regulatory proteins, gntR family
111256-phosphogluconate dehydrogenase, C-terminal domain
322613Multicopper oxidase
665112737WW domain
2311119Ribosomal RNA adenine dimethylase
17516413551147150822WD domain, G-beta repeat
112Calponin family repeat
4421314Heavy-metal-associated domain
11Dockerin type I domain
85526531Adenylate kinase
11Pathogenesis-related protein Bet v I family
22213212Phosphoglucomutase/phosphomannomutase, C-terminal domain
22222111Ribosomal protein S8
23212111Ribosomal protein S11
12813461255LIM domain
33213113Regulator of chromosome condensation (RCC1) repeat
22212110Ribosomal protein S13/S18
1113Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
23212111chorismate binding enzyme
3643452560s Acidic ribosomal protein
1113CUB domain
44314319Prenyltransferase and squalene oxidase repeat
78829539Protein kinase C terminal domain
111115Single-strand binding protein family
1111127S-adenosylmethionine synthetase, N-terminal domain
33Bacterial regulatory proteins, tetR family
11101072563Acyl-CoA dehydrogenase, C-terminal domain
1820145211492Ubiquitin carboxyl-terminal hydrolase
12115Ribosomal protein L36
1113Ribonuclease T2 family
16613522HSF-type DNA-binding
22212110SRP54-type protein, GTPase domain
123Urease alpha-subunit, N-terminal domain
34333117Serine carboxypeptidase
111092101052Phosphatidylinositol 3- and 4-kinase
22DeoR C terminal sensor domain
21112411Transketolase, thiamine diphosphate binding domain
5656Glycosyl hydrolases family 11
11114WHEP-TRS domain
22212211Inositol monophosphatase family
12216Isocitrate lyase family
22212211Serine hydroxymethyltransferase
11911Iron-containing alcohol dehydrogenase
22213111Ribosomal protein L10
76334528KOW motif
11114Ribosomal protein L34
1113Ribosomal protein L33
12213110RF-1 domain
11114Sodium:solute symporter family
2111117Imidazoleglycerol-phosphate dehydratase
111126DNA polymerase family A
111137IMP dehydrogenase / GMP reductase domain
121127Glucose-6-phosphate dehydrogenase, NAD binding domain
78529839Protein phosphatase 2C
46443223Nucleotidyl transferase
22115213Carbonic anhydrase
325Phosphoribulokinase / Uridine kinase family
612311436Fatty acid desaturase
57747333MutS domain V
111115Delta-aminolevulinic acid dehydratase
131319Arginase family
87638638MCM P-loop domain
13116Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
21113Bacterial extracellular solute-binding proteins, family 3
9107101147FHA domain
22NADH-ubiquinone/plastoquinone oxidoreductase chain 6
161913654112220AMP-binding enzyme
9133341042G-protein alpha subunit
7893201158HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
17512126His Kinase A (phospho-acceptor) domain
98747944Armadillo/beta-catenin-like repeat
42262583940180Tetratricopeptide repeat
2162121143Ion transport protein
1411119DNA gyrase/topoisomerase IV, subunit A
33Binding-protein-dependent transport system inner membrane component
11Periplasmic binding proteins and sugar binding domain of LacI family
6881111347BRCA1 C Terminus (BRCT) domain
55739736Glycosyl transferases group 1
67414931Glycosyl transferase family 2
221229SAM domain (Sterile alpha motif)
11215linker histone H1 and H5 family
111115Ribosomal protein L7/L12 C-terminal domain
51419Pectate lyase
123Urease, gamma subunit
32227483Phosphopantetheine attachment site
22323214Formyl transferase
79539639Metallopeptidase family M24
5463288111187451Leucine Rich Repeat
1021924729118alpha/beta hydrolase fold
34343623RNA polymerase Rpb2, domain 6
5410322PB1 domain
1422110Staphylococcal nuclease homologue
131310281157Rab-GTPase-TBC domain
111115Tudor domain
121116WH1 domain
35314126Zinc finger, ZZ type
111216HRDC domain
10149217860CBS domain
2322110Ribosomal protein L13
122218Ribosomal protein L4/L1 family
111227Clp protease
22215214S1 RNA binding domain
112HIUase/Transthyretin family
4533520AhpC/TSA family
35423320tRNA synthetases class I (W and Y)
213UvrD/REP helicase N-terminal domain
76319329Rhodanese-like domain
7138129Universal stress protein family
18231563430126Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
2211219C-terminal regulatory domain of Threonine dehydratase
2223211AIR synthase related protein, N-terminal domain
710737539tRNA synthetase class II core domain (G, H, P, S and T)
23112110SpoU rRNA Methylase family
1121218Tetrapyrrole (Corrin/Porphyrin) Methylases
111115Glycosyl transferase family, a/b domain
11Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
21115PDZ domain
1247Class II Aldolase and Adducin N-terminal domain
11114Diacylglycerol kinase accessory domain
3333517Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
23515420Fes/CIP4, and EFC/F-BAR homology domain
2114141191685IQ calmodulin-binding motif
222219Phosphoinositide 3-kinase family, accessory domain (PIK domain)
1222411Phospholipase D Active site motif
5311212Regulator of G protein signaling domain
46754935GTPase-activator protein for Ras-like GTPase
7811181045RasGEF domain
37625730RasGEF N-terminal motif
1416145111676RhoGAP domain
101612492273RhoGEF domain
51524632SPRY domain
45314522RNA polymerase Rpb1, domain 2
23112211Guanylate kinase
65527934Gelsolin repeat
11137410954UBA/TS-N domain
11Filamin/ABP280 repeat
2114GGL domain
675262147HECT-domain (ubiquitin-transferase)
31113110Helix-hairpin-helix motif
11BRCA2 repeat
14211211MSP (Major sperm protein) domain
12244123Ribonuclease III domain
1221219Region in Clathrin and VPS
33323317RanBP1 domain
23212212PPIC-type PPIASE domain
386219Zn-finger in Ran binding protein and others
1516115231989Zinc finger C-x8-C-x5-C-x3-H type (and similar)
2223211B-box zinc finger
12227Poly(ADP-ribose) polymerase catalytic domain
1146Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
32478112835251F-box domain
111115Elongation factor 1 gamma, conserved domain
12115Calpain family cysteine protease
1113Copper fist DNA binding domain
764211535CRAL/TRIO domain
21818442BTB/POZ domain
12112144Ricin-type beta-trefoil lectin domain
111115Inhibitor of Apoptosis domain
34214317Voltage gated chloride channel
39161231Caspase domain
244372545GDSL-like Lipase/Acylhydrolase
1111127Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
23501472442160ABC transporter transmembrane region
12618Integrase core domain
2437218FAD binding domain
2128489Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1124HAMP domain
122229ribosomal L5P family C-terminus
55517528Insulinase (Peptidase family M16)
4443621Dehydrogenase E1 component
1111217Lumazine binding domain
77747335Elongation factor G C-terminus
34324420DnaJ central domain
213Starch binding domain
33213113Ribosomal protein L1p/L10e family
9136511549Cation transporting ATPase, C-terminus
9178613558Cation transporter/ATPase, N-terminus
25324420Aconitase C-terminal domain
2323616Amino acid kinase family
111115N-(5'phosphoribosyl)anthranilate (PRA) isomerase
12111612Acyl transferase domain
123Urease beta subunit
11Dihydrodipicolinate synthetase family
253818104219152haloacid dehalogenase-like hydrolase
112Glycosyl hydrolases family 2
17113527Glycosyl hydrolases family 18
1211128Proliferating cell nuclear antigen, N-terminal domain
1113Translation initiation factor IF-3, C-terminal domain
1112117Adenylosuccinate synthetase
111115Asparaginase, N-terminal
11Beta defensin
35313318Peptidase S24-like
1221129Inorganic pyrophosphatase
735311635Glycosyl hydrolases family 16
132219Glycosyl hydrolases family 15
2316517NADH:flavin oxidoreductase / NADH oxidase family
222224143-hydroxyacyl-CoA dehydrogenase, C-terminal domain
121217Glycosyl hydrolase family 20, catalytic domain
34214216HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
11158GMC oxidoreductase
1321310Asparagine synthase
137588Fungal cellulose binding domain
111317EF-1 guanine nucleotide exchange domain
22Gas vesicle protein
111115Homoserine dehydrogenase
11Flavin-binding monooxygenase-like
25223216tRNA synthetases class I (E and Q), catalytic domain
1212118tRNA synthetases class I (R)
37423221XPG N-terminal domain
1088151051Metallo-beta-lactamase superfamily
134F5/8 type C domain
3344519Choline/Carnitine o-acyltransferase
221112128Putative esterase
11213Glycosyl hydrolase family 9
23212111Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111216Arginosuccinate synthase
111115Electron transfer flavoprotein FAD-binding domain
11DnaB-like helicase N terminal domain
34313519RNB domain
23113515CNH domain
3323213Diacylglycerol kinase catalytic domain
4125216746Dual specificity phosphatase, catalytic domain
1222310MyTH4 domain
45413421P21-Rho-binding domain
1499141056PX domain
25612521Ras association (RalGDS/AF-6) domain
55415121UBX domain
33314216VHS domain
121116Phosphoinositide 3-kinase C2
131218DAHP synthetase I family
43423420Carbon-nitrogen hydrolase
121116Prephenate dehydratase
44PKD domain
11Pentapeptide repeats (8 copies)
6444523Pumilio-family RNA binding repeat
5737527Histone-like transcription factor (CBF/NF-Y) and archaeal histone
121217Pterin binding enzyme
1111228ER lumen protein retaining receptor
1211117Glycoprotease family
111115Histidinol dehydrogenase
14314215impB/mucB/samB family
145Phosphoenolpyruvate carboxykinase C-terminal P-loop domain
121127Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
1113Ribosomal L28 family
1111116Ribosomal L29 protein
111115Ribosomal L39 protein
1111217Ribosomal S17
111115Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
33Glycosyl hydrolase family 7
112AP2 domain
3423113RNA pseudouridylate synthase
46448531Histone deacetylase domain
1124Glycosyltransferase family 10 (fucosyltransferase) C-term
211127POT family
12115PWWP domain
82472151470SET domain
11226Isochorismatase family
426Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
34423218XPG I-region
11Acetokinase family
11AcrB/AcrD/AcrF family
11PRD domain
224DNA photolyase
11NlpC/P60 family
11Cation-independent mannose-6-phosphate receptor repeat
224Nitroreductase family
2313312Cytosol aminopeptidase family, catalytic domain
11111276,7-dimethyl-8-ribityllumazine synthase
11114Ribosomal protein S16
12211310Acyl CoA binding protein
45425626Cullin family
11114Elongation factor TS
24226521FAD binding domain
112O-methyltransferase domain
25415926EamA-like transporter family
910838745ThiF family
1111116Ribosomal family S4e
323219231Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
11Penicillin binding protein transpeptidase domain
11Hepatitis core antigen
112dTDP-4-dehydrorhamnose 3,5-epimerase
134412Ammonium Transporter Family
25217219Sulfate permease family
211111117MATH domain
1211117Uncharacterized protein family UPF0004
113319Dehydratase family
12221311Transaldolase/Fructose-6-phosphate aldolase
13114212Mechanosensitive ion channel
211116GTP cyclohydrolase II
1111153,4-dihydroxy-2-butanone 4-phosphate synthase
45414220Adaptor complexes medium subunit family
1211117Dipeptidyl peptidase IV (DPP IV) N-terminal region
11NB-ARC domain
132428Glycosyl hydrolase family 3 N terminal domain
111115Ribosomal protein L44
1113Sodium:sulfate symporter transmembrane region
111216DNA-dependent RNA polymerase
123FAD binding domain in molybdopterin dehydrogenase
111115Glycosyl transferase family 4
121228Nucleosome assembly protein (NAP)
1112117GMP synthase C terminal domain
22Phage lysozyme
21114211Adenosine/AMP d