PFAM Domains • Dichomitus squalens CBS464.89 v1.0
Annotations/GenomesAntsi1Cerun2Dicsq1Dicsqu18370_1Dicsqu463_1Dicsqu464_1Fibra1Helsul1Polar1Polbr1Pycco1Pycco1662_1Triab1_1TotalAnnotation Description
PFAMs
7,3678,0468,07210,0799,99010,0627,0147,9719,1439,1627,9347,9068,605111,351
40414443424241474849424247568ATPase family associated with various cellular activities (AAA)
41463841394040404847393851548ABC transporter
444444444444452ATP synthase alpha/beta family, nucleotide-binding domain
111115EGF-like domain
14141415151514141514151516190Elongation factor Tu GTP binding domain
1110101110117111111111110135Helix-loop-helix DNA-binding domain
78141310136911101098128Hsp20/alpha crystallin family
7121411121267119777122Hsp70 protein
78141211128888879120KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
111111118SH2 domain
26252415151524262424252229294SH3 domain
1010101010109111010101013133Actin
28281745526232424262623259Ankyrin repeat
7877777777771398ADP-ribosylation factor family
36334448474839314956414037549Eukaryotic aspartyl protease
333333333333339Cyclic nucleotide-binding domain
111111111111113Cytochrome c
867888611987814108Double-stranded RNA binding motif
16191916181919191922186EF hand
1112111112124Fe-4S binding domain
111121119Fibronectin type III domain
111111118Globin
11161814171618202221202018231Glutathione S-transferase, C-terminal domain
111111111111113Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1113Hemopexin
111271011119101615997137Homeodomain
1113Laminin EGF domain
322222232222228lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
646547565655771Myosin head (motor domain)
1371851721831851911721312021941241271812,184Cytochrome P450
1412091471861721731371751881951621662512,302Protein kinase domain
15141610101019151717161715191Pyridine nucleotide-disulphide oxidoreductase
23252226262624252424252424318Ras family
71088888999999111Response regulator receiver domain
78810121534482028232188RNase H
65696060626163667170676860842RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
12223Reverse transcriptase (RNA-dependent DNA polymerase)
111111111111113Copper/zinc superoxide dismutase (SODC)
223454235622242Iron/manganese superoxide dismutases, alpha-hairpin domain
25626252723445426139Subtilase family
37333142424035363432303134457Sugar (and other) transporter
10108999891014889121Thioredoxin
11Trypsin
475555557755469Tubulin/FtsZ family, GTPase domain
2104233223233von Willebrand factor type A domain
55465024252440496266555861615Zinc finger, C2H2 type
62675979735586770596358621Zinc finger, C3HC4 type (RING finger)
1416318101012151617211225207Zinc knuckle
222333222222229Protein-tyrosine phosphatase
10394828587851079912812783881131,281short chain dehydrogenase
54396460596246556873525253737Zinc-binding dehydrogenase
454555444444456Thiolase, N-terminal domain
5444341164522660Beta-ketoacyl synthase, N-terminal domain
3321113333333322Fe-2S iron-sulfur cluster binding domain
111111111111113Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
9878898788887103Glutamine amidotransferase class-I
1010101010101010111010109130TCP-1/cpn60 chaperonin family
11ATP synthase A chain
343333443333342Glutamine synthetase, catalytic domain
111111111111113Triosephosphate isomerase
18161417171713131515111111188E1-E2 ATPase
14181918211815151820161618226Core histone H2A/H2B/H3/H4
1111116Copper binding proteins, plastocyanin/azurin family
698777798866997Alpha amylase, catalytic domain
566666566666575Phorbol esters/diacylglycerol binding domain (C1 domain)
455444343455353Bacterial transferase hexapeptide (six repeats)
333444333433343tRNA synthetases class I (I, L, M and V)
1112121413138201012101110156Cyclin, N-terminal domain
16172424252522184042171624310Carboxylesterase family
444444444444351DNA polymerase family B
343333333333340ATP synthase subunit C
22014141313212120121217161Peroxidase
4255544810744567Beta-lactamase
444444445544454C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
29242519191924272828232426315Calcineurin-like phosphoesterase
11101219181910131112131518181Cellulase (glycosyl hydrolase family 5)
577666677766581tRNA synthetases class II (D, K and N)
36393736383637373741373840489Mitochondrial carrier protein
13141819191914162120201914226Aminotransferase class I and II
676333777777676Phosphoribosyl transferase domain
14141214141413131415141411176Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111111113Phosphoglycerate kinase
212222222222225Ribosomal protein S4/S9 N-terminal domain
222222222222226Ribosomal protein S12/S23
111222111111116Chaperonin 10 Kd subunit
13161213131314161913131315183C2 domain
20222210101017182325222221242PH domain
47510910366644680bZIP transcription factor
15171924212420152318191916250Aldehyde dehydrogenase family
55657769686830779294697590929Fungal Zn(2)-Cys(6) binuclear cluster domain
25222323242425232425232222305Cytochrome b5-like Heme/Steroid binding domain
423444334444346Oxidoreductase molybdopterin binding domain
91012111111118121213137140Oxidoreductase NAD-binding domain
25212124232522242020232324295SNF2 family N-terminal domain
222222222222226Ribosomal protein S7p/S5e
22212022222220202121222120274Ubiquitin-conjugating enzyme
555555565555667Isocitrate/isopropylmalate dehydrogenase
222222222222226Ribosomal Proteins L2, RNA binding domain
222222222222226Hsp90 protein
222222222222125Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111111111112Dihydrofolate reductase
1113Chitin recognition protein
242222235522235Cysteine-rich secretory protein family
11111111111112Ribosomal protein S3, C-terminal domain
487666547766577Cupin
3333333333333392-oxoacid dehydrogenases acyltransferase (catalytic domain)
333434445833451Catalase
1111111111111Disintegrin
2667771881925298UDP-glucoronosyl and UDP-glucosyl transferase
475565565555568Aminotransferase class-III
222222222222226Ribosomal protein S19
112222111111117DNA gyrase B
344444245544451Thiamine pyrophosphate enzyme, central domain
333333343333340Lyase
21111121111215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111111111113Adenylate and Guanylate cyclase catalytic domain
111111112111114ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
112222122212121Indole-3-glycerol phosphate synthase
213131111111219Aromatic amino acid lyase
111111111111113Pyruvate kinase, barrel domain
999989810899811116Kinesin motor domain
29342832323027313233303128397DnaJ domain
14151414141413141414141416184Proteasome subunit
245666365544359Major intrinsic protein
111111111111113ATP synthase
154333242222336Glycosyl hydrolase family 1
1111111111111133'5'-cyclic nucleotide phosphodiesterase
111111111111113Profilin
221222121122222Ribosomal protein L22p/L17e
222222222222226Ribosomal protein L14p/L23e
13161718181716151917171615214Ubiquitin family
455555455555664Cofilin/tropomyosin-type actin-binding protein
32122321232222714-3-3 protein
132122222421Alkaline phosphatase
111111111111113Zinc carboxypeptidase
47516165636344586058565859743Aldo/keto reductase family
13101366612151414121215148Myb-like DNA-binding domain
555555455555766Forkhead domain
122221111114Glycosyl hydrolases family 32 N-terminal domain
111222111111116Ribosomal protein L16p/L10e
221222222222225Ribosomal protein S14p/S29e
353333343333342FKBP-type peptidyl-prolyl cis-trans isomerase
111111111111113Glutathione peroxidase
221221111114
5765557710865581Flavodoxin
11Protamine P1
112Tropomyosin
111111111111113Calreticulin family
133333123322231Common central domain of tyrosinase
767887669977693Aminotransferase class-V
2322222211824244Ribonucleotide reductase, small chain
50545256555643455152485056668DEAD/DEAH box helicase
878789868181768184878685891,099Helicase conserved C-terminal domain
213Fructose-bisphosphate aldolase class-I
111111111111113EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222222226Ribosomal protein L23
111111111111113Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111111111113Ribosomal protein L5
434444543354653Pyridoxal-dependent decarboxylase conserved domain
433444433333344Citrate synthase, C-terminal domain
455555455565564GHMP kinases N terminal domain
676777667877889Biotin carboxylase, N-terminal domain
111111111111113Tryptophan synthase alpha chain
889999999109108116Pyridoxal-phosphate dependent enzyme
1214'Paired box' domain
14161516151615181515151514199NUDIX domain
343444343333445pfkB family carbohydrate kinase
6977778911117712108Glycosyl hydrolases family 28
222222222222226Ribosomal protein L3
222222222222226Ribosomal protein L11, RNA binding domain
81078886799887103Histidine phosphatase superfamily (branch 1)
111111113211116Thymidylate synthase
112Lipoxygenase
444444444444452ATP synthase alpha/beta chain, C terminal domain
444443554444453Calponin homology (CH) domain
555333455555558Glutamine amidotransferases class-II
222222222222226Ribosomal protein S15
2344442105566560Thaumatin family
111111211111114Fructose-1-6-bisphosphatase, N-terminal domain
1111111110513229Ribonucleotide reductase, all-alpha domain
223222122222226Ribosomal protein S2
222222132222226SRF-type transcription factor (DNA-binding and dimerisation domain)
108101111117101110101011130GATA zinc finger
22232499918232625201923250Amino acid permease
494555665544668Prolyl oligopeptidase family
122222112211120Ribosomal protein L30p/L7e
1013141191113141313141410159Histidine phosphatase superfamily (branch 2)
11111111111112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444445544555Aconitase family (aconitate hydratase)
2555553466661068Glycosyl hydrolase family 10
11111111111112Glycosyl hydrolases family 17
222222222222226Ribosomal protein S5, N-terminal domain
222222122222225Nucleoside diphosphate kinase
21244421111124Tetraspanin family
222222222222226Ribosomal protein S10p/S20e
417666337753361Arrestin (or S-antigen), N-terminal domain
111111111111113Phosphoglucose isomerase
111111111111113Carbohydrate phosphorylase
111111111111113SecY translocase
111111111111113Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222222226Ribosomal protein L6
438888644444570Polyprenyl synthetase
222222222222226Hexokinase
776999568897797Dynamin family
111111111211114Transcription factor TFIID (or TATA-binding protein, TBP)
343232354434545Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11114Phytochrome region
12137Proton-conducting membrane transporter
88899988999913116Biotin-requiring enzyme
111111111111113Phosphofructokinase
223332222222229Ribosomal protein S17
111111111111113Hydroxymethylglutaryl-coenzyme A reductase
333333444444446FGGY family of carbohydrate kinases, N-terminal domain
888888771088910107Enoyl-CoA hydratase/isomerase
222222222222226Ribosomal protein S9/S16
144333213322233Transcription factor TFIIB repeat
856788589988897Cytidine and deoxycytidylate deaminase zinc-binding region
111111111111113Molybdopterin oxidoreductase
881198814111711121010137Chromo (CHRromatin Organisation MOdifier) domain
111111121111417Phosphatidylinositol-specific phospholipase C, Y domain
121122122112422Phosphatidylinositol-specific phospholipase C, X domain
967777967766690D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
323333423333237Malic enzyme, N-terminal domain
2222222232222276-phosphogluconate dehydrogenase, C-terminal domain
714131313134611117718137Multicopper oxidase
9107910999109999118WW domain
222222223432230Ribosomal RNA adenine dimethylase
1311241921491491581291251641631471451511,927WD domain, G-beta repeat
454555434454355Heavy-metal-associated domain
333333333333339Adenylate kinase
121333212222226Phosphoglucomutase/phosphomannomutase, C-terminal domain
111222111111116Ribosomal protein S8
121222121122120Ribosomal protein S11
666666566665676LIM domain
22Matrixin
342656134444551Regulator of chromosome condensation (RCC1) repeat
221222122222224Ribosomal protein S13/S18
223222222222227chorismate binding enzyme
23333323223333560s Acidic ribosomal protein
112ATP synthase B/B' CF(0)
444444445444453Prenyltransferase and squalene oxidase repeat
666555676677678Protein kinase C terminal domain
11111111111112Single-strand binding protein family
11111111111112S-adenosylmethionine synthetase, N-terminal domain
1011810101010101110101110131Bromodomain
881010910108101010119123Acyl-CoA dehydrogenase, C-terminal domain
14151415171515141414161615194Ubiquitin carboxyl-terminal hydrolase
11111111111112Ribosomal protein L36
232222232222430Ribonuclease T2 family
455555355556462HSF-type DNA-binding
222222222222226SRP54-type protein, GTPase domain
112222111111117Urease alpha-subunit, N-terminal domain
11141818192016152121191919230Serine carboxypeptidase
8888888899888106Phosphatidylinositol 3- and 4-kinase
222222222222125Transketolase, thiamine diphosphate binding domain
11114WHEP-TRS domain
223333222222230Inositol monophosphatase family
444444444444452Glutaredoxin
434222444444344Isocitrate lyase family
11111111211113Serine hydroxymethyltransferase
353333653333346Iron-containing alcohol dehydrogenase
122222122222224Ribosomal protein L10
554545554455561KOW motif
11111111111112Ribosomal protein L34
112Negative factor, (F-Protein) or Nef
1113Ribosomal protein L33
233333222233435RF-1 domain
422222452222435Sodium:solute symporter family
111111111111113Imidazoleglycerol-phosphate dehydratase
111111111111113DNA polymerase family A
112111111111114IMP dehydrogenase / GMP reductase domain
111111111111113Glucose-6-phosphate dehydrogenase, NAD binding domain
667888661110999103Protein phosphatase 2C
343333233333339Nucleotidyl transferase
436777325422456Carbonic anhydrase
111111111111113Phosphoribulokinase / Uridine kinase family
10169910101112101110109137Fatty acid desaturase
665666666666677MutS domain V
111111111111113Delta-aminolevulinic acid dehydratase
645555565555465Arginase family
666777666666681MCM P-loop domain
211222421111121Squalene/phytoene synthase
1113Bacterial extracellular solute-binding proteins, family 3
71412131414891315121210153FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
30323436373634343736373644463AMP-binding enzyme
13141515151513141817141413190G-protein alpha subunit
14141617171713162019171727224HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
22Cytochrome c oxidase subunit III
665555556666874His Kinase A (phospho-acceptor) domain
433333343333341Armadillo/beta-catenin-like repeat
27312613121323292828303036326Tetratricopeptide repeat
332333233333438Ion transport protein
111111